Rmu_ssc0000432.1_g000113

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0001307
Physical Location & Seq
Forward (+)
388718 .. 391335
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000432.1_g000113.1.cds

Sequence Viewer

Length: 1476 bp
ctggcatattcctcaccccaagctaccaagcaccactcacccgctaaagcagagcccaaggcctctctttcttccatcttcttcacttcaagaaaagcctcctcctttgcttatggaatcgcctttgctctcattgccttcacttccttctgggttttcaacccatctggctactctttcccttttagcttcaacaccatcttctactcttctccttccaactcttctcaggaagttactaaaaccccaaagattgaatctttaccacatttgggcagcaatggaagtttgaacagtgaaatgggtgcttctcagttttccgggaagatgggagatcagagcagaactcaaatgggtaccgatcaatcttcaaaacccatgatttcttttccccaagaacccaatcagaccagaaatgagtcttctttttctgaaggttctagtggggaaaatggtttgccaagctatgtggcattgaagtccataagcaatgaggggttgtctgggtttgagttgattaatggttgtgatttgtttgatggaagatgggtgagagatgattcatacccactttatgctgctgggtcttgtccttacattgatgaatctttcaattgttttctcaatagtaggcctgataatggttatgaaaagtatagatggcaacccaaaaactgcaatctcccaaggatgaatggaaggaacatgttggaattattgagaggaaagcgtctagtttttgttggtgattctctcaacaggaatatgtgggagtctttggattacaattgttcagtggagtttgttcaatcaccatttctagttcaagaatcggaggtgctgaccacaaatgggtcaaagaaggaaacactgcgcctggatatgattcagaaatccttggataagtacaaaagtgcagatgttctcgtcttcaacacaggtcactggtggactcatgagaaaacttccagagggcagggttactatcaagagggtgactatatctatagtcaattgaatgtcaaagaggcgtatggtaaagctataacaacatgggccagatggctggatgctaatataaatcctgaaaaaactgttgttttcttccggggctattcgcccaatcactttagtggtggaagatggaatactggaggtcaacgtcatggtcggacagagccaattcaatatgagggatacaaaggaaaatatcctgcaaagatgagaatgctggactcagtaatcagggaaatgaagattccaatcttttatctgaatgttacaaaaatgacagattttcggagggatgctcacccatccatttacagaaagcagaatttgacagaggaggagagacagttgtctttgagatcccaggattgcagtcattggtgccttcctggtgttcctgatacatggaacgagcttctatatgctcatctccttacatatacccagcagcggaggagaccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

491

Amino Acids

56.05

Weight (kDa)

8.82

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 2 cut(s) 356, 1392
AciI CCGC 2 cut(s) 42, 1462
AclWI GGATC 1 cut(s) 1365
AcsI RAATTY 1 cut(s) 1336
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 2 cut(s) 358, 908
AfiI CCNNNNNNNGG 4 cut(s) 272, 641, 852, 1461
AflIII ACRYGT 1 cut(s) 705
AjnI CCWGG 3 cut(s) 876, 1374, 1399
AleI CACNNNNGTG 1 cut(s) 1131
AluBI AGCT 5 cut(s) 23, 189, 465, 1043, 1426
AluI AGCT 5 cut(s) 23, 189, 465, 1043, 1426
Alw26I GTCTC 2 cut(s) 1348, 1462
AlwI GGATC 1 cut(s) 1365
AoxI GGCC 3 cut(s) 60, 632, 1056
ApeKI GCWGC 3 cut(s) 276, 578, 1459
ApoI RAATTY 1 cut(s) 1336
AseI ATTAAT 1 cut(s) 519
Asp718I GGTACC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 876
AspS9I GGNCC 1 cut(s) 1056
AsuC2I CCSGG 2 cut(s) 322, 1109
AsuHPI GGTGA 7 cut(s) 6, 30, 562, 758, 804, 1007, 1304
BanI GGYRCC 2 cut(s) 356, 1392
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 1132, 1164
BbsI GAAGAC 2 cut(s) 414, 922
BbvI GCAGC 3 cut(s) 288, 565, 1471
BciT130I CCWGG 3 cut(s) 878, 1376, 1401
BciVI GTATCC 1 cut(s) 1190
BcnI CCSGG 2 cut(s) 322, 1109
BcoDI GTCTC 2 cut(s) 1348, 1462
BfaI CTAG 3 cut(s) 441, 734, 821
BfmI CTRYAG 1 cut(s) 1006
BfuI GTATCC 1 cut(s) 1190
BisI GCNGC 3 cut(s) 277, 579, 1460
BlsI GCNGC 3 cut(s) 278, 580, 1461
Bme1390I CCNGG 5 cut(s) 322, 878, 1109, 1376, 1401
BmgT120I GGNCC 1 cut(s) 1056
BmiI GGNNCC 2 cut(s) 358, 1394
BmrFI CCNGG 5 cut(s) 322, 878, 1109, 1376, 1401
BmsI GCATC 2 cut(s) 1060, 1297
BoxI GACNNNNGTC 1 cut(s) 1360
BpiI GAAGAC 2 cut(s) 414, 922
BplI GAGNNNNNCTC 4 cut(s) 331, 363, 1294, 1326
BpmI CTGGAG 1 cut(s) 1173
BpuMI CCSGG 2 cut(s) 322, 1109
BsaBI GATNNNNATC 1 cut(s) 1262
BsaI GGTCTC 1 cut(s) 1462
BsaJI CCNNGG 5 cut(s) 57, 686, 897, 1108, 1374
BsaXI ACNNNNNCTCC 2 cut(s) 1343, 1373
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 641, 852, 1461
Bse1I ACTGG 2 cut(s) 950, 1156
Bse3DI GCAATG 3 cut(s) 132, 286, 496
Bse8I GATNNNNATC 1 cut(s) 1262
BseBI CCWGG 3 cut(s) 878, 1376, 1401
BseDI CCNNGG 5 cut(s) 57, 686, 897, 1108, 1374
BseGI GGATG 4 cut(s) 696, 1075, 1312, 1316
BseJI GATNNNNATC 1 cut(s) 1262
BseLI CCNNNNNNNGG 4 cut(s) 272, 641, 852, 1461
BseMI GCAATG 3 cut(s) 132, 286, 496
BseMII CTCAG 3 cut(s) 242, 326, 1251
BseNI ACTGG 2 cut(s) 950, 1156
BseRI GAGGAG 3 cut(s) 91, 1361, 1364
BseXI GCAGC 3 cut(s) 288, 565, 1471
BseYI CCCAGC 2 cut(s) 581, 1455
BsgI GTGCAG 1 cut(s) 936
BshFI GGCC 3 cut(s) 62, 634, 1058
BshNI GGYRCC 2 cut(s) 356, 1392
BsiSI CCGG 2 cut(s) 321, 1108
BslI CCNNNNNNNGG 4 cut(s) 272, 641, 852, 1461
BsmAI GTCTC 2 cut(s) 1348, 1462
BsmI GAATGC 1 cut(s) 1233
BsnI GGCC 3 cut(s) 62, 634, 1058
Bso31I GGTCTC 1 cut(s) 1462
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 334, 361, 1370
BspACI CCGC 2 cut(s) 42, 1462
BspANI GGCC 3 cut(s) 62, 634, 1058
BspCNI CTCAG 3 cut(s) 241, 325, 1250
BspHI TCATGA 1 cut(s) 955
BspLI GGNNCC 2 cut(s) 358, 1394
BspPI GGATC 1 cut(s) 1365
BspT107I GGYRCC 2 cut(s) 356, 1392
BspTNI GGTCTC 1 cut(s) 1462
BsrDI GCAATG 3 cut(s) 132, 286, 496
BsrI ACTGG 2 cut(s) 950, 1156
BssECI CCNNGG 5 cut(s) 57, 686, 897, 1108, 1374
BssMI GATC 3 cut(s) 334, 361, 1370
BssT1I CCWWGG 3 cut(s) 57, 686, 897
Bst2UI CCWGG 3 cut(s) 878, 1376, 1401
Bst4CI ACNGT 3 cut(s) 296, 1096, 1359
Bst6I CTCTTC 2 cut(s) 214, 229
BstDEI CTNAG 3 cut(s) 228, 312, 1237
BstF5I GGATG 4 cut(s) 696, 1075, 1312, 1316
BstHHI GCGC 1 cut(s) 876
BstKTI GATC 3 cut(s) 337, 364, 1373
BstMAI GTCTC 2 cut(s) 1348, 1462
BstMBI GATC 3 cut(s) 334, 361, 1370
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 3 cut(s) 878, 1376, 1401
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 1360
BstSCI CCNGG 5 cut(s) 320, 876, 1107, 1374, 1399
BstSFI CTRYAG 1 cut(s) 1006
BstV1I GCAGC 3 cut(s) 288, 565, 1471
BstV2I GAAGAC 2 cut(s) 414, 922
BstX2I RGATCY 1 cut(s) 1370
BstXI CCANNNNNNTGG 1 cut(s) 1066
BstYI RGATCY 1 cut(s) 1370
BsuI GTATCC 1 cut(s) 1190
BsuRI GGCC 3 cut(s) 62, 634, 1058
BtsCI GGATG 4 cut(s) 696, 1075, 1312, 1316
BtsI GCAGTG 1 cut(s) 869
BtsIMutI CAGTG 4 cut(s) 301, 801, 869, 943
CciI TCATGA 1 cut(s) 955
CfoI GCGC 1 cut(s) 876
Cfr13I GGNCC 1 cut(s) 1056
CseI GACGC 1 cut(s) 719
Csp6I GTAC 2 cut(s) 357, 907
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 6 cut(s) 379, 706, 956, 1053, 1166, 1416
CviQI GTAC 2 cut(s) 357, 907
DdeI CTNAG 3 cut(s) 228, 312, 1237
DpnI GATC 3 cut(s) 336, 363, 1372
DpnII GATC 3 cut(s) 334, 361, 1370
Eam1104I CTCTTC 2 cut(s) 214, 229
EarI CTCTTC 2 cut(s) 214, 229
Eco130I CCWWGG 3 cut(s) 57, 686, 897
Eco147I AGGCCT 2 cut(s) 62, 634
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 1462
Eco57I CTGAAG 1 cut(s) 453
EcoRII CCWGG 3 cut(s) 876, 1374, 1399
EcoT14I CCWWGG 3 cut(s) 57, 686, 897
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 3 cut(s) 57, 686, 897
FaeI CATG 6 cut(s) 382, 709, 959, 1056, 1169, 1419
FatI CATG 6 cut(s) 378, 705, 955, 1052, 1165, 1415
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 277, 579, 1460
FokI GGATG 4 cut(s) 703, 1082, 1303, 1319
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 277, 579, 1460
FspBI CTAG 3 cut(s) 441, 734, 821
GlaI GCGC 1 cut(s) 875
GluI GCNGC 3 cut(s) 277, 579, 1460
GsaI CCCAGC 2 cut(s) 585, 1459
GsuI CTGGAG 1 cut(s) 1173
HaeIII GGCC 3 cut(s) 62, 634, 1058
HapII CCGG 2 cut(s) 321, 1108
HgaI GACGC 1 cut(s) 719
HhaI GCGC 1 cut(s) 876
Hin1II CATG 6 cut(s) 382, 709, 959, 1056, 1169, 1419
Hin6I GCGC 1 cut(s) 874
HinP1I GCGC 1 cut(s) 874
HincII GTYRAC 1 cut(s) 1160
HindII GTYRAC 1 cut(s) 1160
HpaII CCGG 2 cut(s) 321, 1108
HphI GGTGA 7 cut(s) 6, 30, 562, 758, 804, 1007, 1304
Hpy166II GTNNAC 2 cut(s) 951, 1160
Hpy188I TCNGA 8 cut(s) 339, 408, 433, 835, 891, 1173, 1275, 1302
Hpy188III TCNNGA 8 cut(s) 90, 230, 827, 956, 969, 989, 1085, 1409
Hpy8I GTNNAC 2 cut(s) 951, 1160
HpyAV CCTTC 7 cut(s) 148, 157, 225, 428, 693, 856, 1406
HpyCH4III ACNGT 3 cut(s) 296, 1096, 1359
HpyCH4IV ACGT 1 cut(s) 1162
HpyCH4V TGCA 4 cut(s) 678, 917, 1217, 1383
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 3 cut(s) 228, 312, 1237
HpySE526I ACGT 1 cut(s) 1162
Hsp92II CATG 6 cut(s) 382, 709, 959, 1056, 1169, 1419
HspAI GCGC 1 cut(s) 874
KpnI GGTACC 1 cut(s) 360
Kzo9I GATC 3 cut(s) 334, 361, 1370
Lsp1109I GCAGC 3 cut(s) 288, 565, 1471
LweI GCATC 2 cut(s) 1060, 1297
MaeI CTAG 3 cut(s) 441, 734, 821
MaeII ACGT 1 cut(s) 1162
MaeIII GTNAC 5 cut(s) 235, 941, 980, 995, 1279
MalI GATC 3 cut(s) 336, 363, 1372
MboI GATC 3 cut(s) 334, 361, 1370
MfeI CAATTG 3 cut(s) 613, 787, 1013
MflI RGATCY 1 cut(s) 1370
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 6 cut(s) 613, 713, 787, 1013, 1182, 1336
MlyI GAGTC 4 cut(s) 428, 782, 946, 1229
MmeI TCCRAC 3 cut(s) 243, 690, 1151
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 1131
MspA1I CMGCKG 1 cut(s) 1462
MspI CCGG 2 cut(s) 321, 1108
MspR9I CCNGG 5 cut(s) 322, 878, 1109, 1376, 1401
MunI CAATTG 3 cut(s) 613, 787, 1013
Mva1269I GAATGC 1 cut(s) 1233
MvaI CCWGG 3 cut(s) 878, 1376, 1401
MwoI GCNNNNNNNGC 1 cut(s) 134
NciI CCSGG 2 cut(s) 322, 1109
NdeII GATC 3 cut(s) 334, 361, 1370
NlaIII CATG 6 cut(s) 382, 709, 959, 1056, 1169, 1419
NlaIV GGNNCC 2 cut(s) 358, 1394
NmuCI GTSAC 2 cut(s) 941, 995
NspI RCATGY 1 cut(s) 709
OliI CACNNNNGTG 1 cut(s) 1131
PagI TCATGA 1 cut(s) 955
PceI AGGCCT 2 cut(s) 62, 634
PciI ACATGT 1 cut(s) 705
PctI GAATGC 1 cut(s) 1233
PfeI GAWTC 8 cut(s) 117, 257, 560, 605, 749, 830, 886, 1258
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 3 cut(s) 278, 580, 1461
PleI GAGTC 4 cut(s) 427, 781, 946, 1229
PpsI GAGTC 4 cut(s) 427, 781, 946, 1229
PscI ACATGT 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 1360
PshBI ATTAAT 1 cut(s) 519
Psp6I CCWGG 3 cut(s) 876, 1374, 1399
PspFI CCCAGC 2 cut(s) 581, 1455
PspGI CCWGG 3 cut(s) 876, 1374, 1399
PspN4I GGNNCC 2 cut(s) 358, 1394
PspPI GGNCC 1 cut(s) 1056
PsuI RGATCY 1 cut(s) 1370
RsaI GTAC 2 cut(s) 358, 908
RsaNI GTAC 2 cut(s) 357, 907
RseI CAYNNNNRTG 1 cut(s) 1131
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 3 cut(s) 277, 579, 1460
Sau3AI GATC 3 cut(s) 334, 361, 1370
Sau96I GGNCC 1 cut(s) 1056
SchI GAGTC 4 cut(s) 428, 782, 946, 1229
ScrFI CCNGG 5 cut(s) 322, 878, 1109, 1376, 1401
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 2 cut(s) 1060, 1297
SfcI CTRYAG 1 cut(s) 1006
SmiMI CAYNNNNRTG 1 cut(s) 1131
Sse9I AATT 6 cut(s) 613, 713, 787, 1013, 1182, 1336
SseBI AGGCCT 2 cut(s) 62, 634
SsiI CCGC 2 cut(s) 42, 1462
SspMI CTAG 3 cut(s) 441, 734, 821
StuI AGGCCT 2 cut(s) 62, 634
StyD4I CCNGG 5 cut(s) 320, 876, 1107, 1374, 1399
StyI CCWWGG 3 cut(s) 57, 686, 897
TaaI ACNGT 3 cut(s) 296, 1096, 1359
TaiI ACGT 1 cut(s) 1165
TasI AATT 6 cut(s) 613, 713, 787, 1013, 1182, 1336
TatI WGTACW 1 cut(s) 906
TfiI GAWTC 8 cut(s) 117, 257, 560, 605, 749, 830, 886, 1258
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 4 cut(s) 301, 801, 876, 950
TseFI GTSAC 2 cut(s) 941, 995
TseI GCWGC 3 cut(s) 276, 578, 1459
Tsp45I GTSAC 2 cut(s) 941, 995
TspDTI ATGAA 5 cut(s) 552, 618, 663, 707, 1268
TspRI CASTG 4 cut(s) 301, 801, 876, 950
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 1 cut(s) 1336
XceI RCATGY 1 cut(s) 709
XspI CTAG 3 cut(s) 441, 734, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.