Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001307

Physical Location & Seq

Genomic Coordinates Reverse (-)

87057841 .. 87058828

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35528

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTTCTTGTCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGCTATATCAACTGAATGTTAAAGAGGCGTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTATTGTTTTCTTCCGGGGCTATTCACCTAATCACTTTAGCGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAATTCAATACGAGGCATACAAAGGAAAATATCCGGCAAAGATGAAAATACTGGACTCAGTAATTAGGGAAATGAAGACTCCAATCTTTTATCTGAATGTTACAAAAATGACTGATTTTCGGCGGGATGCTCATCCATCCATTTACAGAAAGCAGAATTTGACAGAGGAGGAGAGACAGCTGTCTTTGCGATCCCAGGATTGTAGTCATTGGTGCCTCCCTGGTGTTCGTGATACATGGAACGAGCTTCTATATGCTCATCTCCTTAGATATATCCAGCATCGGAGGAGACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

182

Amino Acids

21.48

Weight (kDa)

9.93

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	25 - 170	1.9e-51	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49340
fragaria_vesca	FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44460 FvH4_3g44460 FvH4_3g44460
malus_domestica	MD03G1012500.v1.1 MD03G1012600.v1.1 MD03G1013000.v1.1 MD03G1013100.v1.1 MD03G1013400.v1.1 MD03G1013500.v1.1 MD11G1015200.v1.1
prunus_persica	Prupe.6G013100_v2.0.a1 Prupe.6G013300_v2.0.a1
pyrus_communis	pycom02g13780 pycom03g01130
rosa_chinensis	RchiOBHm_Chr5g0081011 RchiOBHm_Chr5g0081071 RchiOBHm_Chr5g0081121 RchiOBHm_Chr5g0081131
rosa_laevigata	RLG00000036911 RLG00000036913
rosa_multiflora	Rmu_sc0006274.1_g000005 Rmu_ssc0000432.1_g000079 Rmu_ssc0000432.1_g000080 Rmu_ssc0000432.1_g000113 Rmu_ssc0000432.1_g000119
rosa_roxburghii	Rroxscaffold_1G00002310 Rroxscaffold_1G00002320 Rroxscaffold_1G00002470
rosa_rugosa	Rorug05G0473500 Rorug05G0473600
rosa_samantha	Rh5AG525800 Rh5AG526000 Rh5AG526100 Rh5BG549700 Rh5BG549900 Rh5BG550300 Rh5BG550400 Rh5CG572600 Rh5CG573200 Rh5CG573300 Rh5DG560000 Rh5DG560100
rosa_wichuraiana	Rw0G002560 Rw0G002570 Rw0G012050 Rw5G048870 Rw5G048880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	465
AciI	CCGC	2 cut(s)	207, 376
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	15, 260
AjnI	CCWGG	2 cut(s)	447, 472
AluBI	AGCT	3 cut(s)	116, 433, 499
AluI	AGCT	3 cut(s)	116, 433, 499
Alw26I	GTCTC	2 cut(s)	421, 535
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	1 cut(s)	129
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	465
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
BbsI	GAAGAC	2 cut(s)	3, 335
BccI	CCATC	3 cut(s)	129, 210, 397
BciT130I	CCWGG	2 cut(s)	449, 474
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	421, 535
Bme1390I	CCNGG	3 cut(s)	182, 449, 474
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	3 cut(s)	182, 449, 474
BmsI	GCATC	3 cut(s)	133, 370, 541
BoxI	GACNNNNGTC	1 cut(s)	433
BpiI	GAAGAC	2 cut(s)	3, 335
BpmI	CTGGAG	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	3 cut(s)	181, 447, 472
Bse1I	ACTGG	3 cut(s)	31, 229, 309
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	449, 474
BseDI	CCNNGG	3 cut(s)	181, 447, 472
BseGI	GGATG	4 cut(s)	148, 385, 385, 389
BseJI	GATNNNNATC	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	3 cut(s)	31, 229, 309
BseRI	GAGGAG	2 cut(s)	434, 437
BshFI	GGCC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	181, 287
BsmAI	GTCTC	2 cut(s)	421, 535
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	535
Bsp143I	GATC	1 cut(s)	443
BspACI	CCGC	2 cut(s)	207, 376
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	467
BspPI	GGATC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	465
BspTNI	GGTCTC	1 cut(s)	535
BsrI	ACTGG	3 cut(s)	31, 229, 309
BssECI	CCNNGG	3 cut(s)	181, 447, 472
BssMI	GATC	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	449, 474
BstDEI	CTNAG	2 cut(s)	310, 518
BstF5I	GGATG	4 cut(s)	148, 385, 385, 389
BstKTI	GATC	1 cut(s)	446
BstMAI	GTCTC	2 cut(s)	421, 535
BstMBI	GATC	1 cut(s)	443
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	2 cut(s)	449, 474
BstPAI	GACNNNNGTC	1 cut(s)	433
BstSCI	CCNGG	3 cut(s)	180, 447, 472
BstV2I	GAAGAC	2 cut(s)	3, 335
BstXI	CCANNNNNNTGG	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	4 cut(s)	148, 385, 385, 389
BtsIMutI	CAGTG	1 cut(s)	24
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	4 cut(s)	37, 126, 239, 489
CviJI	RGCY	7 cut(s)	116, 131, 139, 186, 253, 433, 499
CviKI_1	RGCY	7 cut(s)	116, 131, 139, 186, 253, 433, 499
DdeI	CTNAG	2 cut(s)	310, 518
DpnI	GATC	1 cut(s)	445
DpnII	GATC	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	535
EcoRII	CCWGG	2 cut(s)	447, 472
FaeI	CATG	4 cut(s)	40, 129, 242, 492
FatI	CATG	4 cut(s)	36, 125, 238, 488
FauI	CCCGC	1 cut(s)	369
FokI	GGATG	4 cut(s)	155, 372, 376, 392
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	2 cut(s)	181, 287
Hin1II	CATG	4 cut(s)	40, 129, 242, 492
HinfI	GANTC	3 cut(s)	33, 308, 331
HpaII	CCGG	2 cut(s)	181, 287
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	246, 348, 537
Hpy188III	TCNNGA	5 cut(s)	37, 50, 70, 158, 482
Hpy8I	GTNNAC	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	2 cut(s)	310, 518
Hsp92II	CATG	4 cut(s)	40, 129, 242, 492
Kzo9I	GATC	1 cut(s)	443
LweI	GCATC	3 cut(s)	133, 370, 541
MaeIII	GTNAC	3 cut(s)	22, 61, 352
MalI	GATC	1 cut(s)	445
MboI	GATC	1 cut(s)	443
MboII	GAAGA	4 cut(s)	3, 169, 225, 340
MluCI	AATT	3 cut(s)	255, 315, 409
MlyI	GAGTC	3 cut(s)	27, 302, 325
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	9 cut(s)	46, 66, 94, 221, 259, 412, 415, 479, 531
MseI	TTAA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	2 cut(s)	181, 287
MspR9I	CCNGG	3 cut(s)	182, 449, 474
MvaI	CCWGG	2 cut(s)	449, 474
MwoI	GCNNNNNNNGC	1 cut(s)	439
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	443
NlaIII	CATG	4 cut(s)	40, 129, 242, 492
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	36
PleI	GAGTC	3 cut(s)	27, 302, 325
PpsI	GAGTC	3 cut(s)	27, 302, 325
PshAI	GACNNNNGTC	1 cut(s)	433
Psp6I	CCWGG	2 cut(s)	447, 472
PspGI	CCWGG	2 cut(s)	447, 472
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	443
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	3 cut(s)	27, 302, 325
ScrFI	CCNGG	3 cut(s)	182, 449, 474
SetI	ASST	6 cut(s)	24, 118, 196, 232, 435, 501
SfaNI	GCATC	3 cut(s)	133, 370, 541
Sse9I	AATT	3 cut(s)	255, 315, 409
SsiI	CCGC	2 cut(s)	207, 376
StyD4I	CCNGG	3 cut(s)	180, 447, 472
TasI	AATT	3 cut(s)	255, 315, 409
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	311, 341
TspRI	CASTG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.