RchiOBHm_Chr5g0081131

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001307
Physical Location & Seq
Reverse (-)
87163221 .. 87165369
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35539

Sequence Viewer

Length: 1761 bp
ATGTTTTCAATCTTCTTCTCCAAGAGAAATTCCATGGTTTGTACTTATGCATTCACAATTGTCTTCATTACATGTACCATCCTCTTGGTTTTCAACCCTTCTCGCCCTTCGGTTCCTTTTGGCTTCAAAAATCTTCTTTATACCTCTCCTCAGACCCCAAACCCTCATTGGAAACATGATTCTTTACCACAGTTTGATGAGATTGGAAGTTTGAAAGAGAATGTGGGGATTGATCAGAAGGGATTTCAGATTGGTCTTAATCAATCTTCTGGGGGAAATGGAGGAACCAAGAAAAATGTAGAGACTGAAAGGGATGATCATGTTGGTGCTCCTCAATCATCATACACTACCAAGAAAAATGTAGAGACTGAAAGGGATGATCATATTGGTGCTCCTCAACCATCAAACACTACCATGGAAAATGTAGAGATTAAAAGGGATGATCATATTGGTACTTCTCAATCATCAAACACTACCATTCTTTCCATGTTCAAAGACTCCAATAACACAGGAACCGAAGTTTCTGAGAAAGTTGAGAGTTCTGAGAGAAGAAATGAGACCAAGAATGCTGTAAGCTCTCATTCTTCTTCTAATGGAGAAAATGGTTTGAAGGAGAAAGGGAGTGATAGTAAAAAGGCACCATCTAACAAGAAACAAACTAGGTTGAAGTTGAAGAATGAATGTGACCTATTTGATGGAAGGTGGGTGAGAGATAATTCTTACCCACTTTATGCTCCAGGAACTTGTCCTTATATAGATAAGCCTTTCGATTGTTTCCACAACGGTAGGCCTGATAATGGTTACGAGAAGTACAGATGGCAACCGAAACATTGCAATGTCCCGAGGTTGGATGGTAAGAAGATGTTGAGATTGTTGGCAGGAAAGCGTCTAGTTTTTGTTGGCGATTCTCTCAATAGGAATATGTGGGAGTCTTTACTTTGTGTTCTTAGAAATTCAGTGGAAGATAAGAACAAAGTTTATGAAGTCTCGGGCAGGCAAGAGTTCCGTACAGAGGACTCTTTCTCTTTCATATTCCAGGATTATAATTGTTCAGTAGAGTTCTTTCAATCACAATTTATAGTTCAAGAATGCGAGGGGAAAGACAAAAATGGATCCAAAAAGGAAACCCTTCGCCTTGATTTAATGGAGAGTTCCGCGGATAAATACAAAGATGCAGATATTCTCATCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAACGGGTTGGGTTACTATCAAGAAGGCAGCCATGTCTATGATGAATTGAATGGAGAAGAGGCATATCGGAGGGCTTTAGCAACATGGGCAAGATGGGTGGATACCAAAGTAGATCCTAAGAAAACTGCTGTTTTCTTCCGCGGCTATTCACCTTCTCACTTTAGGGGTGGAGCATGGAACTCTGGAGGGCAATGCCACGGCGAGACAAAGCCAACTACAGAAACTGAATACGGAGGAGAATATTATCCATCACAAGTGAAGATCTTGGATTCAGTGATGGAGAAGATGATGACTCCAATCTTCTATCTGAACATCACAGCAATGACTGATTTCCGGAAGGATGCTCATCCATCGGTTTACAGAATGCCCAACTTAACTGCAGAGGAAAGAAAAGCGACTTCAATCCAAGATTGCAGCCACTGGTGCCTACCTGGTGTGCCTGAAACATGGAACGAGCTTGTATATGCTCAACTCCTTAGACGCAACATAAAGCAACAGAAGAAGAAGCAACATCAACAGAAGCGTCAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

586

Amino Acids

67.14

Weight (kDa)

8.39

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 227 - 279 4e-23 PMR5 N terminal Domain
PC-Esterase PF13839 280 - 565 2.2e-99 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1044
AccB1I GGYRCC 2 cut(s) 637, 1650
AccII CGCG 2 cut(s) 1157, 1368
AccIII TCCGGA 1 cut(s) 1560
AciI CCGC 4 cut(s) 1155, 1157, 1366, 1368
AclWI GGATC 3 cut(s) 1107, 1120, 1334
AcsI RAATTY 2 cut(s) 28, 952
AfaI GTAC 5 cut(s) 43, 76, 454, 812, 1009
AfiI CCNNNNNNNGG 3 cut(s) 797, 847, 1012
AflIII ACRYGT 1 cut(s) 71
AjnI CCWGG 3 cut(s) 736, 1035, 1657
AluBI AGCT 2 cut(s) 576, 1684
AluI AGCT 2 cut(s) 576, 1684
Alw21I GWGCWC 2 cut(s) 331, 394
Alw26I GTCTC 5 cut(s) 296, 359, 551, 991, 1424
AlwI GGATC 3 cut(s) 1107, 1120, 1334
AlwNI CAGNNNCTG 2 cut(s) 1451, 1647
Ama87I CYCGRG 2 cut(s) 841, 988
Aor13HI TCCGGA 1 cut(s) 1560
AoxI GGCC 1 cut(s) 788
ApeKI GCWGC 2 cut(s) 1254, 1641
ApoI RAATTY 2 cut(s) 28, 952
Asp700I GAANNNNTTC 1 cut(s) 1128
AsuHPI GGTGA 2 cut(s) 718, 1368
AvaI CYCGRG 2 cut(s) 841, 988
BaeI ACNNNNGTAYC 2 cut(s) 1320, 1353
BamHI GGATCC 1 cut(s) 1112
BanI GGYRCC 2 cut(s) 637, 1650
BbsI GAAGAC 1 cut(s) 55
Bbv12I GWGCWC 2 cut(s) 331, 394
BbvI GCAGC 2 cut(s) 1266, 1653
BceAI ACGGC 1 cut(s) 1441
BciT130I CCWGG 3 cut(s) 738, 1037, 1659
BciVI GTATCC 1 cut(s) 1321
BclI TGATCA 4 cut(s) 232, 316, 379, 442
BcoDI GTCTC 5 cut(s) 296, 359, 551, 991, 1424
BfaI CTAG 2 cut(s) 660, 890
BfmI CTRYAG 2 cut(s) 1443, 1605
BfuI GTATCC 1 cut(s) 1321
BglII AGATCT 1 cut(s) 1488
BisI GCNGC 3 cut(s) 1255, 1369, 1642
BlsI GCNGC 3 cut(s) 1256, 1370, 1643
Bme1390I CCNGG 3 cut(s) 738, 1037, 1659
BmeT110I CYCGRG 2 cut(s) 841, 988
BmiI GGNNCC 6 cut(s) 114, 286, 514, 639, 1114, 1652
BmrFI CCNGG 3 cut(s) 738, 1037, 1659
BmsI GCATC 2 cut(s) 1162, 1558
BpiI GAAGAC 1 cut(s) 55
BpmI CTGGAG 2 cut(s) 720, 1431
BsaBI GATNNNNATC 1 cut(s) 1572
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 6 cut(s) 33, 414, 842, 1155, 1366, 1423
BsaWI WCCGGW 1 cut(s) 1560
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 3 cut(s) 797, 847, 1012
Bse1I ACTGG 2 cut(s) 1208, 1652
Bse3DI GCAATG 4 cut(s) 829, 841, 1424, 1554
Bse8I GATNNNNATC 1 cut(s) 1572
BseAI TCCGGA 1 cut(s) 1560
BseBI CCWGG 3 cut(s) 738, 1037, 1659
BseDI CCNNGG 6 cut(s) 33, 414, 842, 1155, 1366, 1423
BseGI GGATG 7 cut(s) 78, 319, 382, 445, 856, 1573, 1573
BseJI GATNNNNATC 1 cut(s) 1572
BseLI CCNNNNNNNGG 3 cut(s) 797, 847, 1012
BseMI GCAATG 4 cut(s) 829, 841, 1424, 1554
BseMII CTCAG 3 cut(s) 164, 516, 534
BseNI ACTGG 2 cut(s) 1208, 1652
BseRI GAGGAG 4 cut(s) 138, 321, 384, 1476
BseXI GCAGC 2 cut(s) 1266, 1653
Bsh1236I CGCG 2 cut(s) 1157, 1368
BshFI GGCC 1 cut(s) 790
BshNI GGYRCC 2 cut(s) 637, 1650
BsiHKAI GWGCWC 2 cut(s) 331, 394
BsiHKCI CYCGRG 2 cut(s) 841, 988
BsiSI CCGG 1 cut(s) 1561
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 3 cut(s) 797, 847, 1012
BsmAI GTCTC 5 cut(s) 296, 359, 551, 991, 1424
BsmFI GGGAC 1 cut(s) 824
BsmI GAATGC 4 cut(s) 50, 571, 1094, 1596
BsnI GGCC 1 cut(s) 790
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 2 cut(s) 841, 988
Bsp1286I GDGCHC 2 cut(s) 331, 394
Bsp13I TCCGGA 1 cut(s) 1560
Bsp143I GATC 7 cut(s) 232, 316, 379, 442, 1112, 1339, 1488
Bsp19I CCATGG 2 cut(s) 33, 414
BspACI CCGC 4 cut(s) 1155, 1157, 1366, 1368
BspANI GGCC 1 cut(s) 790
BspCNI CTCAG 3 cut(s) 163, 517, 535
BspEI TCCGGA 1 cut(s) 1560
BspFNI CGCG 2 cut(s) 1157, 1368
BspHI TCATGA 1 cut(s) 1213
BspLI GGNNCC 6 cut(s) 114, 286, 514, 639, 1114, 1652
BspMAI CTGCAG 1 cut(s) 1609
BspPI GGATC 3 cut(s) 1107, 1120, 1334
BspT107I GGYRCC 2 cut(s) 637, 1650
BspTNI GGTCTC 1 cut(s) 551
BsrDI GCAATG 4 cut(s) 829, 841, 1424, 1554
BsrI ACTGG 2 cut(s) 1208, 1652
BssECI CCNNGG 6 cut(s) 33, 414, 842, 1155, 1366, 1423
BssMI GATC 7 cut(s) 232, 316, 379, 442, 1112, 1339, 1488
BssT1I CCWWGG 2 cut(s) 33, 414
Bst2UI CCWGG 3 cut(s) 738, 1037, 1659
Bst4CI ACNGT 2 cut(s) 192, 785
Bst6I CTCTTC 1 cut(s) 1278
BstC8I GCNNGC 1 cut(s) 995
BstDEI CTNAG 6 cut(s) 150, 525, 543, 947, 1344, 1703
BstDSI CCRYGG 5 cut(s) 33, 414, 1155, 1366, 1423
BstF5I GGATG 7 cut(s) 78, 319, 382, 445, 856, 1573, 1573
BstFNI CGCG 2 cut(s) 1157, 1368
BstKTI GATC 7 cut(s) 235, 319, 382, 445, 1115, 1342, 1491
BstMAI GTCTC 5 cut(s) 296, 359, 551, 991, 1424
BstMBI GATC 7 cut(s) 232, 316, 379, 442, 1112, 1339, 1488
BstMWI GCNNNNNNNGC 2 cut(s) 1313, 1650
BstNI CCWGG 3 cut(s) 738, 1037, 1659
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 3 cut(s) 736, 1035, 1657
BstSFI CTRYAG 2 cut(s) 1443, 1605
BstUI CGCG 2 cut(s) 1157, 1368
BstV1I GCAGC 2 cut(s) 1266, 1653
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 3 cut(s) 1112, 1339, 1488
BstXI CCANNNNNNTGG 2 cut(s) 85, 1234
BstYI RGATCY 3 cut(s) 1112, 1339, 1488
BsuI GTATCC 1 cut(s) 1321
BsuRI GGCC 1 cut(s) 790
BtgI CCRYGG 5 cut(s) 33, 414, 1155, 1366, 1423
BtsCI GGATG 7 cut(s) 78, 319, 382, 445, 856, 1573, 1573
BtsIMutI CAGTG 4 cut(s) 963, 1201, 1506, 1645
Cac8I GCNNGC 1 cut(s) 995
CaiI CAGNNNCTG 2 cut(s) 1451, 1647
CciI TCATGA 1 cut(s) 1213
Cfr42I CCGCGG 2 cut(s) 1158, 1369
CseI GACGC 3 cut(s) 875, 1716, 1739
CsiI ACCWGGT 1 cut(s) 1657
Csp6I GTAC 5 cut(s) 42, 75, 453, 811, 1008
CspCI CAANNNNNGTGG 2 cut(s) 1305, 1340
CviQI GTAC 5 cut(s) 42, 75, 453, 811, 1008
DdeI CTNAG 6 cut(s) 150, 525, 543, 947, 1344, 1703
DpnI GATC 7 cut(s) 234, 318, 381, 444, 1114, 1341, 1490
DpnII GATC 7 cut(s) 232, 316, 379, 442, 1112, 1339, 1488
Eam1104I CTCTTC 1 cut(s) 1278
EarI CTCTTC 1 cut(s) 1278
Eco130I CCWWGG 2 cut(s) 33, 414
Eco147I AGGCCT 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 551
Eco88I CYCGRG 2 cut(s) 841, 988
EcoRII CCWGG 3 cut(s) 736, 1035, 1657
EcoT14I CCWWGG 2 cut(s) 33, 414
EcoT22I ATGCAT 1 cut(s) 52
ErhI CCWWGG 2 cut(s) 33, 414
FaqI GGGAC 1 cut(s) 824
FbaI TGATCA 4 cut(s) 232, 316, 379, 442
Fnu4HI GCNGC 3 cut(s) 1255, 1369, 1642
FokI GGATG 7 cut(s) 65, 326, 389, 452, 863, 1560, 1580
Fsp4HI GCNGC 3 cut(s) 1255, 1369, 1642
FspBI CTAG 2 cut(s) 660, 890
GluI GCNGC 3 cut(s) 1255, 1369, 1642
GsuI CTGGAG 2 cut(s) 720, 1431
HaeIII GGCC 1 cut(s) 790
HapII CCGG 1 cut(s) 1561
HgaI GACGC 3 cut(s) 875, 1716, 1739
HincII GTYRAC 1 cut(s) 1754
HindII GTYRAC 1 cut(s) 1754
HinfI GANTC 8 cut(s) 179, 497, 905, 929, 1016, 1210, 1496, 1519
HpaII CCGG 1 cut(s) 1561
HphI GGTGA 2 cut(s) 718, 1368
Hpy166II GTNNAC 3 cut(s) 1209, 1585, 1754
Hpy188I TCNGA 7 cut(s) 153, 237, 249, 526, 544, 1296, 1536
Hpy188III TCNNGA 6 cut(s) 841, 1085, 1214, 1247, 1410, 1561
Hpy8I GTNNAC 3 cut(s) 1209, 1585, 1754
HpyAV CCTTC 9 cut(s) 108, 117, 232, 604, 693, 1139, 1244, 1389, 1558
HpyCH4III ACNGT 2 cut(s) 192, 785
HpyCH4V TGCA 5 cut(s) 50, 834, 1175, 1607, 1641
HpyF10VI GCNNNNNNNGC 2 cut(s) 1313, 1650
HpyF3I CTNAG 6 cut(s) 150, 525, 543, 947, 1344, 1703
Kpn2I TCCGGA 1 cut(s) 1560
Ksp22I TGATCA 4 cut(s) 232, 316, 379, 442
KspI CCGCGG 2 cut(s) 1158, 1369
Kzo9I GATC 7 cut(s) 232, 316, 379, 442, 1112, 1339, 1488
LmnI GCTCC 4 cut(s) 334, 397, 739, 1397
Lsp1109I GCAGC 2 cut(s) 1266, 1653
LweI GCATC 2 cut(s) 1162, 1558
MabI ACCWGGT 1 cut(s) 1657
MaeI CTAG 2 cut(s) 660, 890
MaeIII GTNAC 4 cut(s) 683, 800, 1199, 1238
MalI GATC 7 cut(s) 234, 318, 381, 444, 1114, 1341, 1490
MboI GATC 7 cut(s) 232, 316, 379, 442, 1112, 1339, 1488
MfeI CAATTG 1 cut(s) 57
MflI RGATCY 3 cut(s) 1112, 1339, 1488
MhlI GDGCHC 2 cut(s) 331, 394
MluCI AATT 7 cut(s) 28, 57, 715, 952, 1045, 1073, 1271
MlyI GAGTC 5 cut(s) 491, 938, 1010, 1204, 1513
MmeI TCCRAC 2 cut(s) 828, 1251
Mph1103I ATGCAT 1 cut(s) 52
MroI TCCGGA 1 cut(s) 1560
MroXI GAANNNNTTC 1 cut(s) 1128
MseI TTAA 4 cut(s) 258, 432, 1142, 1601
MslI CAYNNNNRTG 6 cut(s) 324, 387, 413, 834, 1263, 1547
MspA1I CMGCKG 2 cut(s) 1157, 1368
MspI CCGG 1 cut(s) 1561
MspR9I CCNGG 3 cut(s) 738, 1037, 1659
MunI CAATTG 1 cut(s) 57
Mva1269I GAATGC 4 cut(s) 50, 571, 1094, 1596
MvaI CCWGG 3 cut(s) 738, 1037, 1659
MvnI CGCG 2 cut(s) 1157, 1368
MwoI GCNNNNNNNGC 2 cut(s) 1313, 1650
NcoI CCATGG 2 cut(s) 33, 414
NdeII GATC 7 cut(s) 232, 316, 379, 442, 1112, 1339, 1488
NlaIV GGNNCC 6 cut(s) 114, 286, 514, 639, 1114, 1652
NmuCI GTSAC 2 cut(s) 683, 1199
NsiI ATGCAT 1 cut(s) 52
NspI RCATGY 1 cut(s) 75
PagI TCATGA 1 cut(s) 1213
PceI AGGCCT 1 cut(s) 790
PciI ACATGT 1 cut(s) 71
PctI GAATGC 4 cut(s) 50, 571, 1094, 1596
PdmI GAANNNNTTC 1 cut(s) 1128
PfeI GAWTC 3 cut(s) 179, 905, 1496
PfoI TCCNGGA 2 cut(s) 736, 1035
PkrI GCNGC 3 cut(s) 1256, 1370, 1643
PleI GAGTC 5 cut(s) 491, 937, 1010, 1204, 1513
PpsI GAGTC 5 cut(s) 491, 937, 1010, 1204, 1513
PscI ACATGT 1 cut(s) 71
PsiI TTATAA 1 cut(s) 1044
Psp6I CCWGG 3 cut(s) 736, 1035, 1657
PspGI CCWGG 3 cut(s) 736, 1035, 1657
PspN4I GGNNCC 6 cut(s) 114, 286, 514, 639, 1114, 1652
PstI CTGCAG 1 cut(s) 1609
PstNI CAGNNNCTG 2 cut(s) 1451, 1647
PsuI RGATCY 3 cut(s) 1112, 1339, 1488
RsaI GTAC 5 cut(s) 43, 76, 454, 812, 1009
RsaNI GTAC 5 cut(s) 42, 75, 453, 811, 1008
RseI CAYNNNNRTG 6 cut(s) 324, 387, 413, 834, 1263, 1547
SacII CCGCGG 2 cut(s) 1158, 1369
SaqAI TTAA 4 cut(s) 258, 432, 1142, 1601
SatI GCNGC 3 cut(s) 1255, 1369, 1642
Sau3AI GATC 7 cut(s) 232, 316, 379, 442, 1112, 1339, 1488
SchI GAGTC 5 cut(s) 491, 938, 1010, 1204, 1513
ScrFI CCNGG 3 cut(s) 738, 1037, 1659
SduI GDGCHC 2 cut(s) 331, 394
SexAI ACCWGGT 1 cut(s) 1657
SfaNI GCATC 2 cut(s) 1162, 1558
SfcI CTRYAG 2 cut(s) 1443, 1605
Sfr303I CCGCGG 2 cut(s) 1158, 1369
SgrBI CCGCGG 2 cut(s) 1158, 1369
SmiMI CAYNNNNRTG 6 cut(s) 324, 387, 413, 834, 1263, 1547
Sse9I AATT 7 cut(s) 28, 57, 715, 952, 1045, 1073, 1271
SseBI AGGCCT 1 cut(s) 790
SsiI CCGC 4 cut(s) 1155, 1157, 1366, 1368
SspI AATATT 1 cut(s) 1469
SspMI CTAG 2 cut(s) 660, 890
StuI AGGCCT 1 cut(s) 790
StyD4I CCNGG 3 cut(s) 736, 1035, 1657
StyI CCWWGG 2 cut(s) 33, 414
TaaI ACNGT 2 cut(s) 192, 785
TaqI TCGA 1 cut(s) 768
TasI AATT 7 cut(s) 28, 57, 715, 952, 1045, 1073, 1271
TatI WGTACW 2 cut(s) 41, 810
TauI GCSGC 1 cut(s) 1371
TfiI GAWTC 3 cut(s) 179, 905, 1496
Tru1I TTAA 4 cut(s) 258, 432, 1142, 1601
Tru9I TTAA 4 cut(s) 258, 432, 1142, 1601
TscAI CASTG 4 cut(s) 963, 1208, 1506, 1652
TseFI GTSAC 2 cut(s) 683, 1199
TseI GCWGC 2 cut(s) 1254, 1641
Tsp45I GTSAC 2 cut(s) 683, 1199
TspDTI ATGAA 5 cut(s) 55, 693, 996, 1018, 1284
TspGWI ACGGA 2 cut(s) 995, 1473
TspRI CASTG 4 cut(s) 963, 1208, 1506, 1652
XapI RAATTY 2 cut(s) 28, 952
XceI RCATGY 1 cut(s) 75
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 1128
XspI CTAG 2 cut(s) 660, 890
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.