FvH4_3g44450

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001307
Physical Location & Seq
Reverse (-)
37072639 .. 37076048
3410 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44450.t5

Sequence Viewer

Length: 1575 bp
ATGGCAGATTCCTTACCCCAAACTACAAAGCACCACTCACCCAACAAAGCAGAGCCCAAGGCCTCTCTTTCGTCAATCTTCTTCACCTCAAGAAAAGCTTCTACCTTTGCTTATGGAATCGCCTTTACCTTCATTGCCTTCACTTCTTTCTGGGTTTTCAACCCATCTGGCTACTCTTTCCCTTTTAGCTTCAACACCATCTTCTACTCTTCTCCTTCCAGCTCTTATCAGGAAGTTACTAACACCCCAAAAATTGAATCTTTACCTCATTTGGGCAGCAATGGAAGTTTGAACAGTGAAATGGGTGCTTCTCAGTTTTCTGGGAAGATGGGAAATCAGAGCAGTTCTCAAATGAGTATTGATCAATCTTCGAAACCCATGATTTCTTTTCCCCAAGAATCCAATCAGACTAGAAATGAGTCCTCTGTTTCTGAGGGTTCTAGTGAGGAAAATGGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGGTTGTTGGCTGGGTTTAAGTTGATGAATGGTTGTGATCTGTTTGATGGAAGATGGGTGAGAGATGATTCATACCCACTTTATGCTGCTGGGTCTTGTCCATTCATTGATGAGTCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGGTATGAGAAGTATAGATGGCAACCCAAAGATTGCAACCTCCCAAGGATGAATGGAAGGAACATGTTGGGATTATTGAGAGGAAAGCGTCTAGTTTTTGTTGGTGATTCTCTTAACAGGAATATGTGGGAGTCTTTGGTTTGTCTTCTTAGGAATTCAGTGGATGATAAGAGCAGAGTTTTTGAAGCTTCTGGCAGGAGTGAATTTCGTACAGCGGGCGCCTGCTCTTTTATATTCAAGGATTACAATTGTTCAGTGGAGTTCGTTCAATCGCCATTTCTAGTTCAAGAATCAGAGGTGCTAACTACAAATGGGTCAAAGAAGGAAACACTACACCTGGATATGATACACAGATCATTAGATAATTACAAAAGTTCAGATGTTCTTGTCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTATTATCAAGAGGGTGACCATGTCTATGATCAATTGAATGTCAAAGAGGCGTATGGAAAAGCTATAGCAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACCATTGTTTTCTTCCGGGGCTATTCGCCTAATCACTTTAGTGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAATTCAATATGAGGCATACAAAGGAAAATATCCGGCAAAGATGAGAATACTGGACTCAGTAATCAGGGAAATGAAGACCCCAATCTTTTATCTGAATATTACAAAAATGACGGACTTTCGAAGGGATGCTCATCCATCCGTCTACAGAAAGCAGAATTTGACAGAGGAGGATAGACAGTTGTCTTTGAGATCCCAGGATTGCAGTCATTGGTGCCTCCCTGGTGTTCCTGATACATGGAACGAGCTTCTATATGCTCATCTCCTTAGATATACCCACCATAGTATTCTTTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

525

Amino Acids

59.67

Weight (kDa)

7.95

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 173 - 225 2e-23 PMR5 N terminal Domain
PC-Esterase PF13839 226 - 354 4.7e-40 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 854, 1488
AccI GTMKAC 1 cut(s) 1419
AciI CCGC 1 cut(s) 851
AclWI GGATC 1 cut(s) 1461
AcsI RAATTY 3 cut(s) 790, 839, 1432
AcyI GRCGYC 1 cut(s) 855
AfaI GTAC 1 cut(s) 847
AfiI CCNNNNNNNGG 2 cut(s) 272, 635
AflIII ACRYGT 1 cut(s) 699
AjnI CCWGG 3 cut(s) 972, 1470, 1495
AleI CACNNNNGTG 1 cut(s) 1227
AluBI AGCT 6 cut(s) 98, 189, 222, 824, 1139, 1522
AluI AGCT 6 cut(s) 98, 189, 222, 824, 1139, 1522
AlwI GGATC 1 cut(s) 1461
AoxI GGCC 3 cut(s) 60, 626, 1152
ApeKI GCWGC 2 cut(s) 276, 572
ApoI RAATTY 3 cut(s) 790, 839, 1432
Asp700I GAANNNNTTC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 857
AspS9I GGNCC 1 cut(s) 1152
AsuC2I CCSGG 1 cut(s) 1205
AsuHPI GGTGA 5 cut(s) 30, 76, 556, 752, 1103
AsuII TTCGAA 2 cut(s) 371, 1396
BanI GGYRCC 2 cut(s) 854, 1488
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 1228, 1260
BbsI GAAGAC 3 cut(s) 773, 1018, 1358
BbvI GCAGC 2 cut(s) 288, 559
BccI CCATC 9 cut(s) 172, 206, 322, 527, 534, 648, 1152, 1233, 1420
BciT130I CCWGG 3 cut(s) 974, 1472, 1497
BclI TGATCA 2 cut(s) 361, 1105
BcnI CCSGG 1 cut(s) 1205
BfaI CTAG 4 cut(s) 411, 441, 728, 917
BfmI CTRYAG 2 cut(s) 1140, 1420
BfoI RGCGCY 1 cut(s) 858
BisI GCNGC 2 cut(s) 277, 573
BlsI GCNGC 2 cut(s) 278, 574
Bme1390I CCNGG 4 cut(s) 974, 1205, 1472, 1497
BmgT120I GGNCC 1 cut(s) 1152
BmiI GGNNCC 2 cut(s) 856, 1490
BmrFI CCNGG 4 cut(s) 974, 1205, 1472, 1497
BmsI GCATC 2 cut(s) 1156, 1393
BoxI GACNNNNGTC 1 cut(s) 1456
BpiI GAAGAC 3 cut(s) 773, 1018, 1358
BplI GAGNNNNNCTC 2 cut(s) 331, 363
BpmI CTGGAG 1 cut(s) 1269
Bpu14I TTCGAA 2 cut(s) 371, 1396
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 1205
BsaBI GATNNNNATC 1 cut(s) 1407
BsaHI GRCGYC 1 cut(s) 855
BsaJI CCNNGG 5 cut(s) 57, 680, 1204, 1470, 1495
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 635
Bse1I ACTGG 3 cut(s) 1046, 1252, 1332
Bse3DI GCAATG 3 cut(s) 132, 286, 487
Bse8I GATNNNNATC 1 cut(s) 1407
BseBI CCWGG 3 cut(s) 974, 1472, 1497
BseDI CCNNGG 5 cut(s) 57, 680, 1204, 1470, 1495
BseGI GGATG 6 cut(s) 690, 805, 1171, 1408, 1408, 1412
BseJI GATNNNNATC 1 cut(s) 1407
BseLI CCNNNNNNNGG 2 cut(s) 272, 635
BseMI GCAATG 3 cut(s) 132, 286, 487
BseMII CTCAG 3 cut(s) 326, 423, 1347
BseNI ACTGG 3 cut(s) 1046, 1252, 1332
BseRI GAGGAG 1 cut(s) 1457
BseXI GCAGC 2 cut(s) 288, 559
BseYI CCCAGC 2 cut(s) 497, 575
BshFI GGCC 3 cut(s) 62, 628, 1154
BshNI GGYRCC 2 cut(s) 854, 1488
BsiSI CCGG 2 cut(s) 1204, 1310
BslI CCNNNNNNNGG 2 cut(s) 272, 635
BsnI GGCC 3 cut(s) 62, 628, 1154
Bsp119I TTCGAA 2 cut(s) 371, 1396
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 5 cut(s) 361, 523, 989, 1105, 1466
BspACI CCGC 1 cut(s) 851
BspANI GGCC 3 cut(s) 62, 628, 1154
BspCNI CTCAG 3 cut(s) 325, 424, 1346
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 2 cut(s) 856, 1490
BspPI GGATC 1 cut(s) 1461
BspT104I TTCGAA 2 cut(s) 371, 1396
BspT107I GGYRCC 2 cut(s) 854, 1488
BsrDI GCAATG 3 cut(s) 132, 286, 487
BsrI ACTGG 3 cut(s) 1046, 1252, 1332
BssECI CCNNGG 5 cut(s) 57, 680, 1204, 1470, 1495
BssMI GATC 5 cut(s) 361, 523, 989, 1105, 1466
BssNI GRCGYC 1 cut(s) 855
BssT1I CCWWGG 2 cut(s) 57, 680
Bst2UI CCWGG 3 cut(s) 974, 1472, 1497
Bst4CI ACNGT 2 cut(s) 296, 1455
Bst6I CTCTTC 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 855
BstBI TTCGAA 2 cut(s) 371, 1396
BstC8I GCNNGC 2 cut(s) 853, 859
BstDEI CTNAG 5 cut(s) 312, 432, 785, 1333, 1541
BstEII GGTNACC 1 cut(s) 1091
BstF5I GGATG 6 cut(s) 690, 805, 1171, 1408, 1408, 1412
BstH2I RGCGCY 1 cut(s) 858
BstHHI GCGC 1 cut(s) 857
BstKTI GATC 5 cut(s) 364, 526, 992, 1108, 1469
BstMBI GATC 5 cut(s) 361, 523, 989, 1105, 1466
BstMWI GCNNNNNNNGC 1 cut(s) 1151
BstNI CCWGG 3 cut(s) 974, 1472, 1497
BstNSI RCATGY 1 cut(s) 703
BstPAI GACNNNNGTC 1 cut(s) 1456
BstPI GGTNACC 1 cut(s) 1091
BstSCI CCNGG 4 cut(s) 972, 1203, 1470, 1495
BstSFI CTRYAG 2 cut(s) 1140, 1420
BstV1I GCAGC 2 cut(s) 288, 559
BstV2I GAAGAC 3 cut(s) 773, 1018, 1358
BstX2I RGATCY 1 cut(s) 1466
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 1 cut(s) 1466
BsuRI GGCC 3 cut(s) 62, 628, 1154
BtsCI GGATG 6 cut(s) 690, 805, 1171, 1408, 1408, 1412
BtsIMutI CAGTG 4 cut(s) 301, 801, 897, 1039
Cac8I GCNNGC 2 cut(s) 853, 859
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 1 cut(s) 857
Cfr13I GGNCC 1 cut(s) 1152
CseI GACGC 1 cut(s) 713
Csp6I GTAC 1 cut(s) 846
CviAII CATG 7 cut(s) 379, 700, 1052, 1097, 1149, 1262, 1512
CviQI GTAC 1 cut(s) 846
DdeI CTNAG 5 cut(s) 312, 432, 785, 1333, 1541
DinI GGCGCC 1 cut(s) 856
DpnI GATC 5 cut(s) 363, 525, 991, 1107, 1468
DpnII GATC 5 cut(s) 361, 523, 989, 1105, 1466
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 57, 680
Eco147I AGGCCT 2 cut(s) 62, 628
Eco24I GRGCYC 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 1091
EcoO65I GGTNACC 1 cut(s) 1091
EcoRI GAATTC 1 cut(s) 790
EcoRII CCWGG 3 cut(s) 972, 1470, 1495
EcoT14I CCWWGG 2 cut(s) 57, 680
EcoT38I GRGCYC 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 856
EheI GGCGCC 1 cut(s) 856
ErhI CCWWGG 2 cut(s) 57, 680
FaeI CATG 7 cut(s) 382, 703, 1055, 1100, 1152, 1265, 1515
FalI AAGNNNNNCTT 2 cut(s) 82, 114
FatI CATG 7 cut(s) 378, 699, 1051, 1096, 1148, 1261, 1511
FauI CCCGC 1 cut(s) 844
FbaI TGATCA 2 cut(s) 361, 1105
FblI GTMKAC 1 cut(s) 1419
Fnu4HI GCNGC 2 cut(s) 277, 573
FokI GGATG 6 cut(s) 697, 812, 1178, 1395, 1399, 1415
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 277, 573
FspBI CTAG 4 cut(s) 411, 441, 728, 917
GlaI GCGC 1 cut(s) 856
GluI GCNGC 2 cut(s) 277, 573
GsaI CCCAGC 2 cut(s) 501, 579
GsuI CTGGAG 1 cut(s) 1269
HaeII RGCGCY 1 cut(s) 858
HaeIII GGCC 3 cut(s) 62, 628, 1154
HapII CCGG 2 cut(s) 1204, 1310
HgaI GACGC 1 cut(s) 713
HhaI GCGC 1 cut(s) 857
Hin1I GRCGYC 1 cut(s) 855
Hin1II CATG 7 cut(s) 382, 703, 1055, 1100, 1152, 1265, 1515
Hin6I GCGC 1 cut(s) 855
HinP1I GCGC 1 cut(s) 855
HindIII AAGCTT 2 cut(s) 96, 822
HpaII CCGG 2 cut(s) 1204, 1310
HphI GGTGA 5 cut(s) 30, 76, 556, 752, 1103
Hpy166II GTNNAC 2 cut(s) 1047, 1420
Hpy188I TCNGA 7 cut(s) 339, 408, 433, 931, 1015, 1269, 1371
Hpy188III TCNNGA 8 cut(s) 90, 230, 923, 1052, 1065, 1085, 1181, 1505
Hpy8I GTNNAC 2 cut(s) 1047, 1420
HpyAV CCTTC 6 cut(s) 139, 148, 225, 687, 952, 1392
HpyCH4III ACNGT 2 cut(s) 296, 1455
HpyCH4V TGCA 2 cut(s) 672, 1479
HpyF10VI GCNNNNNNNGC 1 cut(s) 1151
HpyF3I CTNAG 5 cut(s) 312, 432, 785, 1333, 1541
Hsp92I GRCGYC 1 cut(s) 855
Hsp92II CATG 7 cut(s) 382, 703, 1055, 1100, 1152, 1265, 1515
HspAI GCGC 1 cut(s) 855
KasI GGCGCC 1 cut(s) 854
Ksp22I TGATCA 2 cut(s) 361, 1105
Kzo9I GATC 5 cut(s) 361, 523, 989, 1105, 1466
Lsp1109I GCAGC 2 cut(s) 288, 559
LweI GCATC 2 cut(s) 1156, 1393
MaeI CTAG 4 cut(s) 411, 441, 728, 917
MaeIII GTNAC 3 cut(s) 235, 1037, 1091
MalI GATC 5 cut(s) 363, 525, 991, 1107, 1468
MboI GATC 5 cut(s) 361, 523, 989, 1105, 1466
MfeI CAATTG 3 cut(s) 607, 883, 1109
MflI RGATCY 1 cut(s) 1466
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 9 cut(s) 252, 607, 790, 839, 883, 1000, 1109, 1278, 1432
Mly113I GGCGCC 1 cut(s) 855
MlyI GAGTC 5 cut(s) 428, 608, 776, 1042, 1325
MmeI TCCRAC 1 cut(s) 1247
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 2 cut(s) 504, 750
MslI CAYNNNNRTG 2 cut(s) 1101, 1227
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 2 cut(s) 1204, 1310
MspR9I CCNGG 4 cut(s) 974, 1205, 1472, 1497
MunI CAATTG 3 cut(s) 607, 883, 1109
MvaI CCWGG 3 cut(s) 974, 1472, 1497
MwoI GCNNNNNNNGC 1 cut(s) 1151
NarI GGCGCC 1 cut(s) 855
NciI CCSGG 1 cut(s) 1205
NdeII GATC 5 cut(s) 361, 523, 989, 1105, 1466
NlaIII CATG 7 cut(s) 382, 703, 1055, 1100, 1152, 1265, 1515
NlaIV GGNNCC 2 cut(s) 856, 1490
NmuCI GTSAC 2 cut(s) 1037, 1091
NspI RCATGY 1 cut(s) 703
NspV TTCGAA 2 cut(s) 371, 1396
OliI CACNNNNGTG 1 cut(s) 1227
PagI TCATGA 1 cut(s) 1051
PceI AGGCCT 2 cut(s) 62, 628
PciI ACATGT 1 cut(s) 699
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 7 cut(s) 8, 117, 257, 398, 554, 743, 926
PflFI GACNNNGTC 1 cut(s) 1097
PkrI GCNGC 2 cut(s) 278, 574
PleI GAGTC 5 cut(s) 427, 607, 775, 1042, 1325
PluTI GGCGCC 1 cut(s) 858
PpsI GAGTC 5 cut(s) 427, 607, 775, 1042, 1325
PscI ACATGT 1 cut(s) 699
PshAI GACNNNNGTC 1 cut(s) 1456
Psp6I CCWGG 3 cut(s) 972, 1470, 1495
PspEI GGTNACC 1 cut(s) 1091
PspFI CCCAGC 2 cut(s) 497, 575
PspGI CCWGG 3 cut(s) 972, 1470, 1495
PspN4I GGNNCC 2 cut(s) 856, 1490
PspPI GGNCC 1 cut(s) 1152
PsuI RGATCY 1 cut(s) 1466
PsyI GACNNNGTC 1 cut(s) 1097
RsaI GTAC 1 cut(s) 847
RsaNI GTAC 1 cut(s) 846
RseI CAYNNNNRTG 2 cut(s) 1101, 1227
SaqAI TTAA 2 cut(s) 504, 750
SatI GCNGC 2 cut(s) 277, 573
Sau3AI GATC 5 cut(s) 361, 523, 989, 1105, 1466
Sau96I GGNCC 1 cut(s) 1152
SchI GAGTC 5 cut(s) 428, 608, 776, 1042, 1325
ScrFI CCNGG 4 cut(s) 974, 1205, 1472, 1497
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 2 cut(s) 1156, 1393
SfcI CTRYAG 2 cut(s) 1140, 1420
SfoI GGCGCC 1 cut(s) 856
SfuI TTCGAA 2 cut(s) 371, 1396
SmiMI CAYNNNNRTG 2 cut(s) 1101, 1227
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 9 cut(s) 252, 607, 790, 839, 883, 1000, 1109, 1278, 1432
SseBI AGGCCT 2 cut(s) 62, 628
SsiI CCGC 1 cut(s) 851
SspDI GGCGCC 1 cut(s) 854
SspI AATATT 1 cut(s) 1375
SspMI CTAG 4 cut(s) 411, 441, 728, 917
StuI AGGCCT 2 cut(s) 62, 628
StyD4I CCNGG 4 cut(s) 972, 1203, 1470, 1495
StyI CCWWGG 2 cut(s) 57, 680
TaaI ACNGT 2 cut(s) 296, 1455
TaqI TCGA 2 cut(s) 371, 1396
TasI AATT 9 cut(s) 252, 607, 790, 839, 883, 1000, 1109, 1278, 1432
TfiI GAWTC 7 cut(s) 8, 117, 257, 398, 554, 743, 926
Tru1I TTAA 2 cut(s) 504, 750
Tru9I TTAA 2 cut(s) 504, 750
TscAI CASTG 4 cut(s) 301, 801, 897, 1046
TseFI GTSAC 2 cut(s) 1037, 1091
TseI GCWGC 2 cut(s) 276, 572
Tsp45I GTSAC 2 cut(s) 1037, 1091
TspDTI ATGAA 6 cut(s) 121, 527, 546, 580, 701, 1364
TspGWI ACGGA 2 cut(s) 1403, 1405
TspRI CASTG 4 cut(s) 301, 801, 897, 1046
Tth111I GACNNNGTC 1 cut(s) 1097
XapI RAATTY 3 cut(s) 790, 839, 1432
XceI RCATGY 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 1419
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 4 cut(s) 411, 441, 728, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.