Rroxscaffold_1G00002320

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001307
Physical Location & Seq
Forward (+)
2740358 .. 2743428
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002320.1

Sequence Viewer

Length: 1569 bp
ATGGCAGATTCCCCACCCCAAACTACAAAGCGCCACTCACCCGCTAAAACAGAGCCCAGGGCTTCTCTTTCTTCCATCTTCTTCACTTCAAGAAAAGCCTCAGCCTTTGCTTATGGAATCGCCTTTGCCCTCATTGCCTTTACTTCCTTCTGGGTTTTCAACCCATCTGGCTACTCTTTCCCTTTTAGCTTCAACACCATCTTCTACTCTTCTCCTTCCAACTCTTCTCAGGAAGTTACTAAATCCCCAAAGATTGAATCTTTACCACATTTGGGCAGCAATGGAAGTTTGAACAGTGAAATGGGTGCTTCTCAGTTTTCCGGGAAGATGGGAAATCAGAGCAGTACTCAAATGGGTACTGATCAATCTTCAAAACCCATGATTTCTATGCCTCAAGAATCCAATCAGACCAGAAATGAGTCTTCTTTTTCTGAGGGTTCTAGTGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAGTGAGGGATTGTCTGGGTTTGAGTTAATGAATGGTTGTGATTTGTTTGATGGAAGATGGGTGAGAGATGATTCATACCCACTTTATGCTGCTGGGTCTTGTCCTTACATTGATGAATCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGCTATGAAAAGTATAGATGGCAACCCAAAAACTGCAATCTCCCAAGGATGAATGGAAGGAACATGTTGGAATTATTGAGAGCAAAGCGTCTAGTTTTTGTTGGTGATTCTCTCAACAGGAATATGTGGGAGTCTTTGGTTTGTCTTCTTAGGAATTCAGTGGATGATAAGAGCAGAGTTTTTGAAGCTTCTGGTAGGAGCGAATTTCGTACAGAGGGCGCCTACTTTTTTGATTACAATTGTTCACTGGAGTTTGTTCAATCACCATTTCTAGTTCAAGAATCGGAGGTGCTAACCACAAATGGGTCAAAGAAGGAAACACTGCGCCTGGATATGATTCAGAGATCCTTGAATAAGTACAAAAGTGCAGATGTTCTCGTCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGACTATATCTATAGTCAATTAAATGTCAAAGAGGCTTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTGTTGTTTTCTTCCGGGGCTATTCGCCCAATCACTTTAGTGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAATTCAATACGAGGCATACAAAGGAAAATATCCTGCAAAGATGAGAATACTGGACTCAGTAATCAGGGAAATGAAGATTCCAATCTTTTATCTGAATGTTACAAAAATGACTGATTTTCGGAGGGATGCTCACCCATCCATTTACAGAAAGCAGAATTTGACAGAGGAGGAGAGACAGTTGTCTTTGAGATCCCAGGATTGCAGTCATTGGTGCCTCCCTGGTGTTCCTGATACCTGGAACGAGCTTCTATATGCTCATCTCCTTACATATACCCAGCAGCGGAGGAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

522

Amino Acids

59.57

Weight (kDa)

8.76

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 175 - 227 1.1e-22 PMR5 N terminal Domain
PC-Esterase PF13839 228 - 510 6.8e-100 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 860, 1485
AciI CCGC 2 cut(s) 42, 1555
AclWI GGATC 2 cut(s) 981, 1458
AcsI RAATTY 3 cut(s) 796, 845, 1429
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 4 cut(s) 346, 358, 853, 1001
AfiI CCNNNNNNNGG 4 cut(s) 272, 641, 945, 1554
AflIII ACRYGT 1 cut(s) 705
AjnI CCWGG 5 cut(s) 56, 969, 1467, 1492, 1508
AleI CACNNNNGTG 1 cut(s) 1224
AluBI AGCT 5 cut(s) 189, 465, 830, 1136, 1519
AluI AGCT 5 cut(s) 189, 465, 830, 1136, 1519
Alw26I GTCTC 2 cut(s) 1441, 1555
AlwI GGATC 2 cut(s) 981, 1458
AoxI GGCC 2 cut(s) 632, 1149
ApeKI GCWGC 3 cut(s) 276, 578, 1552
ApoI RAATTY 3 cut(s) 796, 845, 1429
AspLEI GCGC 3 cut(s) 33, 863, 969
AspS9I GGNCC 1 cut(s) 1149
AsuC2I CCSGG 2 cut(s) 322, 1202
AsuHPI GGTGA 6 cut(s) 30, 562, 758, 897, 1100, 1397
BanI GGYRCC 2 cut(s) 860, 1485
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 1225, 1257
BbsI GAAGAC 3 cut(s) 414, 779, 1015
BbvCI CCTCAGC 1 cut(s) 100
BbvI GCAGC 3 cut(s) 288, 565, 1564
BciT130I CCWGG 5 cut(s) 58, 971, 1469, 1494, 1510
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 2 cut(s) 322, 1202
BcoDI GTCTC 2 cut(s) 1441, 1555
BfaI CTAG 3 cut(s) 441, 734, 914
BfmI CTRYAG 1 cut(s) 1099
BfoI RGCGCY 2 cut(s) 34, 864
BisI GCNGC 3 cut(s) 277, 579, 1553
BlsI GCNGC 3 cut(s) 278, 580, 1554
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 7 cut(s) 58, 322, 971, 1202, 1469, 1494, 1510
BmgT120I GGNCC 1 cut(s) 1149
BmiI GGNNCC 2 cut(s) 862, 1487
BmrFI CCNGG 7 cut(s) 58, 322, 971, 1202, 1469, 1494, 1510
BmsI GCATC 2 cut(s) 1153, 1390
BoxI GACNNNNGTC 1 cut(s) 1453
BpiI GAAGAC 3 cut(s) 414, 779, 1015
BplI GAGNNNNNCTC 4 cut(s) 331, 363, 1387, 1419
BpmI CTGGAG 2 cut(s) 911, 1266
Bpu10I CCTNAGC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 378
BpuMI CCSGG 2 cut(s) 322, 1202
BsaBI GATNNNNATC 1 cut(s) 1355
BsaHI GRCGYC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 1555
BsaJI CCNNGG 6 cut(s) 56, 57, 686, 1201, 1467, 1492
BsaXI ACNNNNNCTCC 2 cut(s) 1436, 1466
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 641, 945, 1554
Bse1I ACTGG 4 cut(s) 894, 1043, 1249, 1329
Bse3DI GCAATG 2 cut(s) 132, 286
Bse8I GATNNNNATC 1 cut(s) 1355
BseBI CCWGG 5 cut(s) 58, 971, 1469, 1494, 1510
BseDI CCNNGG 6 cut(s) 56, 57, 686, 1201, 1467, 1492
BseGI GGATG 5 cut(s) 696, 811, 1168, 1405, 1409
BseJI GATNNNNATC 1 cut(s) 1355
BseLI CCNNNNNNNGG 4 cut(s) 272, 641, 945, 1554
BseMI GCAATG 2 cut(s) 132, 286
BseMII CTCAG 5 cut(s) 114, 242, 326, 423, 1344
BseNI ACTGG 4 cut(s) 894, 1043, 1249, 1329
BseRI GAGGAG 2 cut(s) 1454, 1457
BseXI GCAGC 3 cut(s) 288, 565, 1564
BseYI CCCAGC 2 cut(s) 581, 1548
BsgI GTGCAG 1 cut(s) 1029
BshFI GGCC 2 cut(s) 634, 1151
BshNI GGYRCC 2 cut(s) 860, 1485
BsiSI CCGG 2 cut(s) 321, 1201
BslI CCNNNNNNNGG 4 cut(s) 272, 641, 945, 1554
BsmAI GTCTC 2 cut(s) 1441, 1555
BsnI GGCC 2 cut(s) 634, 1151
Bso31I GGTCTC 1 cut(s) 1555
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 361, 986, 1463
BspACI CCGC 2 cut(s) 42, 1555
BspANI GGCC 2 cut(s) 634, 1151
BspCNI CTCAG 5 cut(s) 113, 241, 325, 424, 1343
BspHI TCATGA 1 cut(s) 1048
BspLI GGNNCC 2 cut(s) 862, 1487
BspPI GGATC 2 cut(s) 981, 1458
BspT107I GGYRCC 2 cut(s) 860, 1485
BspTNI GGTCTC 1 cut(s) 1555
BsrDI GCAATG 2 cut(s) 132, 286
BsrI ACTGG 4 cut(s) 894, 1043, 1249, 1329
BssECI CCNNGG 6 cut(s) 56, 57, 686, 1201, 1467, 1492
BssMI GATC 3 cut(s) 361, 986, 1463
BssNI GRCGYC 1 cut(s) 861
BssT1I CCWWGG 1 cut(s) 686
Bst2UI CCWGG 5 cut(s) 58, 971, 1469, 1494, 1510
Bst4CI ACNGT 3 cut(s) 296, 1189, 1452
Bst6I CTCTTC 2 cut(s) 214, 229
BstACI GRCGYC 1 cut(s) 861
BstDEI CTNAG 6 cut(s) 100, 228, 312, 432, 791, 1330
BstF5I GGATG 5 cut(s) 696, 811, 1168, 1405, 1409
BstH2I RGCGCY 2 cut(s) 34, 864
BstHHI GCGC 3 cut(s) 33, 863, 969
BstKTI GATC 3 cut(s) 364, 989, 1466
BstMAI GTCTC 2 cut(s) 1441, 1555
BstMBI GATC 3 cut(s) 361, 986, 1463
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 5 cut(s) 58, 971, 1469, 1494, 1510
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 1453
BstSCI CCNGG 7 cut(s) 56, 320, 969, 1200, 1467, 1492, 1508
BstSFI CTRYAG 1 cut(s) 1099
BstV1I GCAGC 3 cut(s) 288, 565, 1564
BstV2I GAAGAC 3 cut(s) 414, 779, 1015
BstX2I RGATCY 2 cut(s) 986, 1463
BstXI CCANNNNNNTGG 1 cut(s) 1159
BstYI RGATCY 2 cut(s) 986, 1463
BsuRI GGCC 2 cut(s) 634, 1151
BtsCI GGATG 5 cut(s) 696, 811, 1168, 1405, 1409
BtsI GCAGTG 2 cut(s) 496, 962
BtsIMutI CAGTG 6 cut(s) 301, 496, 807, 887, 962, 1036
CciI TCATGA 1 cut(s) 1048
CfoI GCGC 3 cut(s) 33, 863, 969
Cfr13I GGNCC 1 cut(s) 1149
CseI GACGC 1 cut(s) 719
Csp6I GTAC 4 cut(s) 345, 357, 852, 1000
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 5 cut(s) 379, 706, 1049, 1146, 1259
CviQI GTAC 4 cut(s) 345, 357, 852, 1000
DdeI CTNAG 6 cut(s) 100, 228, 312, 432, 791, 1330
DinI GGCGCC 1 cut(s) 862
DpnI GATC 3 cut(s) 363, 988, 1465
DpnII GATC 3 cut(s) 361, 986, 1463
Eam1104I CTCTTC 2 cut(s) 214, 229
EarI CTCTTC 2 cut(s) 214, 229
Eco130I CCWWGG 1 cut(s) 686
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 1555
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 5 cut(s) 56, 969, 1467, 1492, 1508
EcoT14I CCWWGG 1 cut(s) 686
EcoT38I GRGCYC 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 862
EheI GGCGCC 1 cut(s) 862
ErhI CCWWGG 1 cut(s) 686
FaeI CATG 5 cut(s) 382, 709, 1052, 1149, 1262
FatI CATG 5 cut(s) 378, 705, 1048, 1145, 1258
FauI CCCGC 1 cut(s) 49
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 277, 579, 1553
FokI GGATG 5 cut(s) 703, 818, 1175, 1396, 1412
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 277, 579, 1553
FspBI CTAG 3 cut(s) 441, 734, 914
GlaI GCGC 3 cut(s) 32, 862, 968
GluI GCNGC 3 cut(s) 277, 579, 1553
GsaI CCCAGC 2 cut(s) 585, 1552
GsuI CTGGAG 2 cut(s) 911, 1266
HaeII RGCGCY 2 cut(s) 34, 864
HaeIII GGCC 2 cut(s) 634, 1151
HapII CCGG 2 cut(s) 321, 1201
HgaI GACGC 1 cut(s) 719
HhaI GCGC 3 cut(s) 33, 863, 969
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 5 cut(s) 382, 709, 1052, 1149, 1262
Hin6I GCGC 3 cut(s) 31, 861, 967
HinP1I GCGC 3 cut(s) 31, 861, 967
HindIII AAGCTT 1 cut(s) 828
HpaII CCGG 2 cut(s) 321, 1201
HphI GGTGA 6 cut(s) 30, 562, 758, 897, 1100, 1397
Hpy166II GTNNAC 2 cut(s) 887, 1044
Hpy188I TCNGA 8 cut(s) 339, 408, 433, 928, 984, 1266, 1368, 1395
Hpy188III TCNNGA 9 cut(s) 90, 230, 395, 920, 1049, 1062, 1082, 1178, 1502
Hpy8I GTNNAC 2 cut(s) 887, 1044
HpyAV CCTTC 4 cut(s) 157, 225, 693, 949
HpyCH4III ACNGT 3 cut(s) 296, 1189, 1452
HpyCH4V TGCA 4 cut(s) 678, 1010, 1310, 1476
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 6 cut(s) 100, 228, 312, 432, 791, 1330
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 5 cut(s) 382, 709, 1052, 1149, 1262
HspAI GCGC 3 cut(s) 31, 861, 967
KasI GGCGCC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 3 cut(s) 361, 986, 1463
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 3 cut(s) 288, 565, 1564
LweI GCATC 2 cut(s) 1153, 1390
MaeI CTAG 3 cut(s) 441, 734, 914
MaeIII GTNAC 5 cut(s) 235, 1034, 1073, 1088, 1372
MalI GATC 3 cut(s) 363, 988, 1465
MboI GATC 3 cut(s) 361, 986, 1463
MfeI CAATTG 2 cut(s) 613, 880
MflI RGATCY 2 cut(s) 986, 1463
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 8 cut(s) 613, 713, 796, 845, 880, 1106, 1275, 1429
Mly113I GGCGCC 1 cut(s) 861
MlyI GAGTC 4 cut(s) 428, 782, 1039, 1322
MmeI TCCRAC 3 cut(s) 243, 690, 1244
MseI TTAA 2 cut(s) 515, 1109
MslI CAYNNNNRTG 1 cut(s) 1224
MspA1I CMGCKG 1 cut(s) 1555
MspI CCGG 2 cut(s) 321, 1201
MspR9I CCNGG 7 cut(s) 58, 322, 971, 1202, 1469, 1494, 1510
MunI CAATTG 2 cut(s) 613, 880
MvaI CCWGG 5 cut(s) 58, 971, 1469, 1494, 1510
MwoI GCNNNNNNNGC 1 cut(s) 134
NarI GGCGCC 1 cut(s) 861
NciI CCSGG 2 cut(s) 322, 1202
NdeII GATC 3 cut(s) 361, 986, 1463
NlaIII CATG 5 cut(s) 382, 709, 1052, 1149, 1262
NlaIV GGNNCC 2 cut(s) 862, 1487
NmuCI GTSAC 2 cut(s) 1034, 1088
NspI RCATGY 1 cut(s) 709
OliI CACNNNNGTG 1 cut(s) 1224
PagI TCATGA 1 cut(s) 1048
PasI CCCWGGG 1 cut(s) 57
PceI AGGCCT 1 cut(s) 634
PciI ACATGT 1 cut(s) 705
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 3 cut(s) 278, 580, 1554
PleI GAGTC 4 cut(s) 427, 781, 1039, 1322
PluTI GGCGCC 1 cut(s) 864
PpsI GAGTC 4 cut(s) 427, 781, 1039, 1322
PscI ACATGT 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 1453
Psp6I CCWGG 5 cut(s) 56, 969, 1467, 1492, 1508
PspFI CCCAGC 2 cut(s) 581, 1548
PspGI CCWGG 5 cut(s) 56, 969, 1467, 1492, 1508
PspN4I GGNNCC 2 cut(s) 862, 1487
PspPI GGNCC 1 cut(s) 1149
PsuI RGATCY 2 cut(s) 986, 1463
RsaI GTAC 4 cut(s) 346, 358, 853, 1001
RsaNI GTAC 4 cut(s) 345, 357, 852, 1000
RseI CAYNNNNRTG 1 cut(s) 1224
SaqAI TTAA 2 cut(s) 515, 1109
SatI GCNGC 3 cut(s) 277, 579, 1553
Sau3AI GATC 3 cut(s) 361, 986, 1463
Sau96I GGNCC 1 cut(s) 1149
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 4 cut(s) 428, 782, 1039, 1322
ScrFI CCNGG 7 cut(s) 58, 322, 971, 1202, 1469, 1494, 1510
SduI GDGCHC 1 cut(s) 57
SetI ASST 9 cut(s) 191, 467, 832, 933, 1036, 1138, 1252, 1511, 1521
SfaNI GCATC 2 cut(s) 1153, 1390
SfcI CTRYAG 1 cut(s) 1099
SfoI GGCGCC 1 cut(s) 862
SmiMI CAYNNNNRTG 1 cut(s) 1224
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
Sse9I AATT 8 cut(s) 613, 713, 796, 845, 880, 1106, 1275, 1429
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 2 cut(s) 42, 1555
SspDI GGCGCC 1 cut(s) 860
SspMI CTAG 3 cut(s) 441, 734, 914
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 7 cut(s) 56, 320, 969, 1200, 1467, 1492, 1508
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 3 cut(s) 296, 1189, 1452
TasI AATT 8 cut(s) 613, 713, 796, 845, 880, 1106, 1275, 1429
TatI WGTACW 2 cut(s) 344, 999
Tru1I TTAA 2 cut(s) 515, 1109
Tru9I TTAA 2 cut(s) 515, 1109
TscAI CASTG 6 cut(s) 301, 496, 807, 894, 969, 1043
TseFI GTSAC 2 cut(s) 1034, 1088
TseI GCWGC 3 cut(s) 276, 578, 1552
Tsp45I GTSAC 2 cut(s) 1034, 1088
TspDTI ATGAA 6 cut(s) 533, 552, 618, 663, 707, 1361
TspRI CASTG 6 cut(s) 301, 496, 807, 894, 969, 1043
XapI RAATTY 3 cut(s) 796, 845, 1429
XceI RCATGY 1 cut(s) 709
XspI CTAG 3 cut(s) 441, 734, 914
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.