MD03G1012600.v1.1

Protein trichome birefringence-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
962001 .. 964877
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1012600.v1.1.491

Sequence Viewer

Length: 1692 bp
ATGGCGGATTACCCAACCCAGACAACCACAAAACCCACCAAGCACCACCACTCCCCCACAATCCCAAGACCAGAGGCCTTCTCCAAGCCCTCTCTTTCTTCCCCAATCTTCTTCCCCTCCAGAAGAACCGCCGCCTTTGCCTATGGCTTCTCGTTCGTCTGCATGGCTTGCACTTTCTTCCTGGTTCTCAACCCATCTGGCTACTCTTTCCCTTTCGGCTTCAAGAACATCTTCAAAACCCCTTTTGAACTTTCCCGGGAAACCCCATTTTCCTGGAAAGCTGAATATTTCCCGCGTTTGGATGAGAGTGGAGGTTTGCAGTCTGATATGGCTAGTGCCCAACTGCCGAACCCAATTCTTTTCTTGCCCCAAGAATCCAATCAGACTTCGTCCCAGAACACTACGATTCAAGTAACTGGGAAAATGGGATTTTCCGGGAAACTGGAGGGTTCAAGAAAAAATGAATCTTTTGCTAAAGATTCTGATGGGGTTTTGGGGCAAGCAGTGGCATTGACCTCGAAAGAGAGTGATGATGCTAGTGAGGCATTGTCTGAATCCGAGAAGCAGAGCAATCAAACTCAGCCCGGTTATGAATTTTCGACGGATGATTGTGACCTGTTTGATGGAATGTGGGTGAGAGATGATTCGTATCCACTTTATGCGCCGGGTTCTTGTCCTCTTATTGATGAATCCTTCAATTGTTTTCTTAATAAGAGGCCTGATAATCGCTACGAAAAGTATAGATGGCAACCCAAACATTGCAATATTCCAAGGTTGGATGGTAAGAACATGTTGGGACTATTGAGAGGAAAGCGACTAGTTTTTGTTGGGGATTCTCTTAATAGGAATATGTGGGAGTCTTTGCTTTGTCTTCTTCGAAATTCAGTGGATGATAAGAGTGGAGTTGTTGAAGCCTTGGGTAGGAGCGAATTTCGTTCAGAGGGATCTTACTCTTTCGTATTCAAGGAGTACAATTGCTCAGTGGAATTCTTTCGATCGCCATTTCTAGTTCAAGAATGGGAGATGGCAGATGCAAATGGATCAATAAAGGAAACACTTCGCCTTGATTTGATTGAGATATCCTCCGATAAGTACAAAACTGCAGATGTTCTCATCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGAAGGGTTACTATCAAGAGGGTAGCTACATCTACGATGTATTGAACGTTAAAGAGGCATTTCGGAAAGCTTTAACAACATGGGCAAGATGGGTGGATACCAACATAAATCCTGAGAAAACTATTGTTTTCTTCCGGGGCTTTTCACCTAATCACTTTAGAGGTGGAAGGTGGAATTCGGGAGGGCAATGCCATGATCTAATAGAGCCACTTGCAAAGGAGACAAATAGAGGAAAATATGCATCAAAATTGAGAATACTTGACTCGGTAATCACTGGAATGAAGACGCCAATATTCTATCTAAACATTACGAGAATGACTGATTTCAGGAGGGATGCTCATCCATCGATTTACAGAAAGCAGAATTTTACAGAGGAGGAGCAGAAATCGCCTTTGAGACACCAGGATTGCAGTCACTGGTGCCTCCCTGGTGTTCCTGATACATGGAATGAGCTTCTATATGCTCAGCTCGTTCGACATAACCAGAAGCAACAACAACAGCAGCGTCAAGACCCACAGCGACAGAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

564

Amino Acids

64.71

Weight (kDa)

8.15

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 203 - 255 3.3e-22 PMR5 N terminal Domain
PC-Esterase PF13839 256 - 541 3.4e-99 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1578
AccII CGCG 1 cut(s) 295
AciI CCGC 4 cut(s) 5, 129, 132, 293
AclI AACGTT 1 cut(s) 1206
AclWI GGATC 2 cut(s) 952, 1048
AcsI RAATTY 6 cut(s) 593, 880, 929, 986, 1333, 1522
AcyI GRCGYC 1 cut(s) 1445
AfaI GTAC 2 cut(s) 971, 1094
AfiI CCNNNNNNNGG 2 cut(s) 298, 921
AflIII ACRYGT 1 cut(s) 789
AhlI ACTAGT 1 cut(s) 817
AjnI CCWGG 4 cut(s) 180, 272, 1560, 1585
AluBI AGCT 5 cut(s) 281, 1185, 1229, 1612, 1627
AluI AGCT 5 cut(s) 281, 1185, 1229, 1612, 1627
Alw26I GTCTC 2 cut(s) 1373, 1549
AlwI GGATC 2 cut(s) 952, 1048
AlwNI CAGNNNCTG 1 cut(s) 1575
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 2 cut(s) 75, 716
ApeKI GCWGC 1 cut(s) 1660
ApoI RAATTY 6 cut(s) 593, 880, 929, 986, 1333, 1522
Asp700I GAANNNNTTC 3 cut(s) 230, 990, 1056
AspLEI GCGC 1 cut(s) 664
AsuC2I CCSGG 6 cut(s) 256, 257, 436, 585, 666, 1295
AsuHPI GGTGA 2 cut(s) 646, 1296
AsuII TTCGAA 1 cut(s) 877
AvaI CYCGRG 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 1578
BbsI GAAGAC 2 cut(s) 863, 1448
BbvI GCAGC 1 cut(s) 1672
BccI CCATC 8 cut(s) 202, 479, 617, 738, 773, 1018, 1242, 1510
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BciT130I CCWGG 4 cut(s) 182, 274, 1562, 1587
BciVI GTATCC 2 cut(s) 660, 1249
BcnI CCSGG 6 cut(s) 256, 257, 436, 585, 666, 1295
BcoDI GTCTC 2 cut(s) 1373, 1549
BcuI ACTAGT 1 cut(s) 817
BfaI CTAG 5 cut(s) 333, 537, 818, 1007, 1690
BfmI CTRYAG 1 cut(s) 1101
BfuI GTATCC 2 cut(s) 660, 1249
BisI GCNGC 2 cut(s) 132, 1661
BlpI GCTNAGC 1 cut(s) 1623
BlsI GCNGC 2 cut(s) 133, 1662
BmeT110I CYCGRG 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 1580
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 4 cut(s) 523, 1021, 1409, 1483
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 2 cut(s) 863, 1448
BplI GAGNNNNNCTC 6 cut(s) 65, 97, 1067, 1099, 1480, 1512
BpmI CTGGAG 2 cut(s) 103, 464
Bpu1102I GCTNAGC 1 cut(s) 1623
Bpu14I TTCGAA 1 cut(s) 877
BpuMI CCSGG 6 cut(s) 256, 257, 436, 585, 666, 1295
Bsa29I ATCGAT 1 cut(s) 1505
BsaBI GATNNNNATC 2 cut(s) 648, 1497
BsaHI GRCGYC 1 cut(s) 1445
BsaJI CCNNGG 5 cut(s) 255, 770, 915, 1294, 1585
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 921
Bse1I ACTGG 5 cut(s) 421, 447, 1136, 1438, 1580
Bse3DI GCAATG 2 cut(s) 757, 1352
Bse8I GATNNNNATC 2 cut(s) 648, 1497
BseBI CCWGG 4 cut(s) 182, 274, 1562, 1587
BseCI ATCGAT 1 cut(s) 1505
BseDI CCNNGG 5 cut(s) 255, 770, 915, 1294, 1585
BseGI GGATG 6 cut(s) 307, 610, 784, 895, 1498, 1498
BseJI GATNNNNATC 2 cut(s) 648, 1497
BseLI CCNNNNNNNGG 2 cut(s) 298, 921
BseMI GCAATG 2 cut(s) 757, 1352
BseMII CTCAG 4 cut(s) 593, 993, 1263, 1637
BseNI ACTGG 5 cut(s) 421, 447, 1136, 1438, 1580
BseRI GAGGAG 2 cut(s) 1547, 1550
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 1 cut(s) 1672
Bsh1236I CGCG 1 cut(s) 295
Bsh1285I CGRYCG 1 cut(s) 998
BshFI GGCC 2 cut(s) 77, 718
BshNI GGYRCC 1 cut(s) 1578
BshVI ATCGAT 1 cut(s) 1505
BsiEI CGRYCG 1 cut(s) 998
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 5 cut(s) 256, 435, 585, 665, 1294
BslFI GGGAC 2 cut(s) 376, 810
BslI CCNNNNNNNGG 2 cut(s) 298, 921
BsmAI GTCTC 2 cut(s) 1373, 1549
BsmFI GGGAC 2 cut(s) 376, 810
BsnI GGCC 2 cut(s) 77, 718
BsoBI CYCGRG 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 877
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 4 cut(s) 944, 995, 1040, 1354
Bsp1720I GCTNAGC 1 cut(s) 1623
BspACI CCGC 4 cut(s) 5, 129, 132, 293
BspANI GGCC 2 cut(s) 77, 718
BspCNI CTCAG 4 cut(s) 592, 992, 1264, 1636
BspDI ATCGAT 1 cut(s) 1505
BspFNI CGCG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 1141
BspLI GGNNCC 1 cut(s) 1580
BspMAI CTGCAG 1 cut(s) 1105
BspPI GGATC 2 cut(s) 952, 1048
BspT104I TTCGAA 1 cut(s) 877
BspT107I GGYRCC 1 cut(s) 1578
BsrDI GCAATG 2 cut(s) 757, 1352
BsrI ACTGG 5 cut(s) 421, 447, 1136, 1438, 1580
BssECI CCNNGG 5 cut(s) 255, 770, 915, 1294, 1585
BssMI GATC 4 cut(s) 944, 995, 1040, 1354
BssNI GRCGYC 1 cut(s) 1445
BssT1I CCWWGG 2 cut(s) 770, 915
Bst2UI CCWGG 4 cut(s) 182, 274, 1562, 1587
BstACI GRCGYC 1 cut(s) 1445
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBI TTCGAA 1 cut(s) 877
BstC8I GCNNGC 2 cut(s) 169, 501
BstDEI CTNAG 4 cut(s) 579, 979, 1272, 1623
BstENI CCTNNNNNAGG 1 cut(s) 919
BstF5I GGATG 6 cut(s) 307, 610, 784, 895, 1498, 1498
BstFNI CGCG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 4 cut(s) 947, 998, 1043, 1357
BstMAI GTCTC 2 cut(s) 1373, 1549
BstMBI GATC 4 cut(s) 944, 995, 1040, 1354
BstMCI CGRYCG 1 cut(s) 998
BstMWI GCNNNNNNNGC 4 cut(s) 137, 168, 542, 1546
BstNI CCWGG 4 cut(s) 182, 274, 1562, 1587
BstNSI RCATGY 1 cut(s) 793
BstSFI CTRYAG 1 cut(s) 1101
BstSLI GKGCMC 1 cut(s) 340
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 1672
BstV2I GAAGAC 2 cut(s) 863, 1448
BstX2I RGATCY 1 cut(s) 944
BstXI CCANNNNNNTGG 1 cut(s) 273
BstYI RGATCY 1 cut(s) 944
Bsu15I ATCGAT 1 cut(s) 1505
BsuI GTATCC 2 cut(s) 660, 1249
BsuRI GGCC 2 cut(s) 77, 718
BsuTUI ATCGAT 1 cut(s) 1505
BtsCI GGATG 6 cut(s) 307, 610, 784, 895, 1498, 1498
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 6 cut(s) 510, 891, 987, 1129, 1431, 1573
Cac8I GCNNGC 2 cut(s) 169, 501
CaiI CAGNNNCTG 1 cut(s) 1575
CciI TCATGA 1 cut(s) 1141
CfoI GCGC 1 cut(s) 664
Cfr9I CCCGGG 1 cut(s) 255
ClaI ATCGAT 1 cut(s) 1505
CseI GACGC 2 cut(s) 1453, 1652
Csp6I GTAC 2 cut(s) 970, 1093
CspCI CAANNNNNGTGG 2 cut(s) 1233, 1268
CviAII CATG 6 cut(s) 163, 790, 1142, 1239, 1352, 1602
CviQI GTAC 2 cut(s) 970, 1093
DdeI CTNAG 4 cut(s) 579, 979, 1272, 1623
DpnI GATC 4 cut(s) 946, 997, 1042, 1356
DpnII GATC 4 cut(s) 944, 995, 1040, 1354
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 770, 915
Eco147I AGGCCT 2 cut(s) 77, 718
Eco32I GATATC 1 cut(s) 1080
Eco88I CYCGRG 1 cut(s) 255
EcoNI CCTNNNNNAGG 1 cut(s) 919
EcoRI GAATTC 2 cut(s) 986, 1333
EcoRII CCWGG 4 cut(s) 180, 272, 1560, 1585
EcoRV GATATC 1 cut(s) 1080
EcoT14I CCWWGG 2 cut(s) 770, 915
EcoT22I ATGCAT 1 cut(s) 1402
ErhI CCWWGG 2 cut(s) 770, 915
FaeI CATG 6 cut(s) 166, 793, 1145, 1242, 1355, 1605
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 2 cut(s) 376, 810
FatI CATG 6 cut(s) 162, 789, 1141, 1238, 1351, 1601
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 132, 1661
FokI GGATG 6 cut(s) 314, 617, 791, 902, 1485, 1505
Fsp4HI GCNGC 2 cut(s) 132, 1661
FspBI CTAG 5 cut(s) 333, 537, 818, 1007, 1690
GlaI GCGC 1 cut(s) 663
GluI GCNGC 2 cut(s) 132, 1661
GsuI CTGGAG 2 cut(s) 103, 464
HaeIII GGCC 2 cut(s) 77, 718
HapII CCGG 5 cut(s) 256, 435, 585, 665, 1294
HgaI GACGC 2 cut(s) 1453, 1652
HhaI GCGC 1 cut(s) 664
Hin1I GRCGYC 1 cut(s) 1445
Hin1II CATG 6 cut(s) 166, 793, 1145, 1242, 1355, 1605
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HindIII AAGCTT 1 cut(s) 1227
HpaII CCGG 5 cut(s) 256, 435, 585, 665, 1294
HphI GGTGA 2 cut(s) 646, 1296
Hpy166II GTNNAC 1 cut(s) 1137
Hpy188I TCNGA 8 cut(s) 325, 384, 484, 553, 559, 940, 1087, 1224
Hpy8I GTNNAC 1 cut(s) 1137
Hpy99I CGWCG 1 cut(s) 604
HpyAV CCTTC 4 cut(s) 88, 703, 1156, 1320
HpyCH4IV ACGT 1 cut(s) 1206
HpyCH4V TGCA 9 cut(s) 162, 171, 319, 762, 1034, 1103, 1373, 1400, 1569
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 168, 542, 1546
HpyF3I CTNAG 4 cut(s) 579, 979, 1272, 1623
HpySE526I ACGT 1 cut(s) 1206
Hsp92I GRCGYC 1 cut(s) 1445
Hsp92II CATG 6 cut(s) 166, 793, 1145, 1242, 1355, 1605
HspAI GCGC 1 cut(s) 662
Kzo9I GATC 4 cut(s) 944, 995, 1040, 1354
LmnI GCTCC 2 cut(s) 924, 1537
Lsp1109I GCAGC 1 cut(s) 1672
LweI GCATC 4 cut(s) 523, 1021, 1409, 1483
MaeI CTAG 5 cut(s) 333, 537, 818, 1007, 1690
MaeII ACGT 1 cut(s) 1206
MaeIII GTNAC 5 cut(s) 412, 611, 1127, 1166, 1571
MalI GATC 4 cut(s) 946, 997, 1042, 1356
MboI GATC 4 cut(s) 944, 995, 1040, 1354
MfeI CAATTG 2 cut(s) 697, 973
MflI RGATCY 1 cut(s) 944
MhlI GDGCHC 1 cut(s) 340
MlyI GAGTC 3 cut(s) 866, 1132, 1415
MmeI TCCRAC 1 cut(s) 756
Mph1103I ATGCAT 1 cut(s) 1402
MroXI GAANNNNTTC 3 cut(s) 230, 990, 1056
MseI TTAA 4 cut(s) 708, 840, 1209, 1232
MslI CAYNNNNRTG 1 cut(s) 1436
MspI CCGG 5 cut(s) 256, 435, 585, 665, 1294
MunI CAATTG 2 cut(s) 697, 973
MvaI CCWGG 4 cut(s) 182, 274, 1562, 1587
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 4 cut(s) 137, 168, 542, 1546
NciI CCSGG 6 cut(s) 256, 257, 436, 585, 666, 1295
NdeII GATC 4 cut(s) 944, 995, 1040, 1354
NlaIII CATG 6 cut(s) 166, 793, 1145, 1242, 1355, 1605
NlaIV GGNNCC 1 cut(s) 1580
NmuCI GTSAC 3 cut(s) 611, 1127, 1571
NsiI ATGCAT 1 cut(s) 1402
NspI RCATGY 1 cut(s) 793
NspV TTCGAA 1 cut(s) 877
PagI TCATGA 1 cut(s) 1141
PceI AGGCCT 2 cut(s) 77, 718
PciI ACATGT 1 cut(s) 789
PdmI GAANNNNTTC 3 cut(s) 230, 990, 1056
PfeI GAWTC 8 cut(s) 374, 406, 464, 479, 554, 644, 689, 833
PflFI GACNNNGTC 1 cut(s) 388
PfoI TCCNGGA 2 cut(s) 272, 434
PkrI GCNGC 2 cut(s) 133, 1662
Ple19I CGATCG 1 cut(s) 998
PleI GAGTC 3 cut(s) 865, 1132, 1415
PpsI GAGTC 3 cut(s) 865, 1132, 1415
PscI ACATGT 1 cut(s) 789
Psp1406I AACGTT 1 cut(s) 1206
Psp6I CCWGG 4 cut(s) 180, 272, 1560, 1585
PspGI CCWGG 4 cut(s) 180, 272, 1560, 1585
PspN4I GGNNCC 1 cut(s) 1580
PstI CTGCAG 1 cut(s) 1105
PstNI CAGNNNCTG 1 cut(s) 1575
PsuI RGATCY 1 cut(s) 944
PsyI GACNNNGTC 1 cut(s) 388
PvuI CGATCG 1 cut(s) 998
RsaI GTAC 2 cut(s) 971, 1094
RsaNI GTAC 2 cut(s) 970, 1093
RseI CAYNNNNRTG 1 cut(s) 1436
SaqAI TTAA 4 cut(s) 708, 840, 1209, 1232
SatI GCNGC 2 cut(s) 132, 1661
Sau3AI GATC 4 cut(s) 944, 995, 1040, 1354
SchI GAGTC 3 cut(s) 866, 1132, 1415
SduI GDGCHC 1 cut(s) 340
SfaNI GCATC 4 cut(s) 523, 1021, 1409, 1483
SfcI CTRYAG 1 cut(s) 1101
SfuI TTCGAA 1 cut(s) 877
SmaI CCCGGG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 1436
SpeI ACTAGT 1 cut(s) 817
SseBI AGGCCT 2 cut(s) 77, 718
SsiI CCGC 4 cut(s) 5, 129, 132, 293
SspI AATATT 3 cut(s) 287, 766, 1452
SspMI CTAG 5 cut(s) 333, 537, 818, 1007, 1690
StuI AGGCCT 2 cut(s) 77, 718
StyI CCWWGG 2 cut(s) 770, 915
TaiI ACGT 1 cut(s) 1209
TaqI TCGA 6 cut(s) 518, 599, 877, 994, 1505, 1633
TatI WGTACW 2 cut(s) 969, 1092
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 8 cut(s) 374, 406, 464, 479, 554, 644, 689, 833
Tru1I TTAA 4 cut(s) 708, 840, 1209, 1232
Tru9I TTAA 4 cut(s) 708, 840, 1209, 1232
TscAI CASTG 6 cut(s) 510, 891, 987, 1136, 1438, 1580
TseFI GTSAC 3 cut(s) 611, 1127, 1571
TseI GCWGC 1 cut(s) 1660
Tsp45I GTSAC 3 cut(s) 611, 1127, 1571
TspDTI ATGAA 4 cut(s) 477, 606, 702, 1454
TspGWI ACGGA 1 cut(s) 617
TspMI CCCGGG 1 cut(s) 255
TspRI CASTG 6 cut(s) 510, 891, 987, 1136, 1438, 1580
Tth111I GACNNNGTC 1 cut(s) 388
XagI CCTNNNNNAGG 1 cut(s) 919
XapI RAATTY 6 cut(s) 593, 880, 929, 986, 1333, 1522
XceI RCATGY 1 cut(s) 793
XmaI CCCGGG 1 cut(s) 255
XmnI GAANNNNTTC 3 cut(s) 230, 990, 1056
XspI CTAG 5 cut(s) 333, 537, 818, 1007, 1690
Zsp2I ATGCAT 1 cut(s) 1402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.