RchiOBHm_Chr5g0081071

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001307
Physical Location & Seq
Reverse (-)
87071493 .. 87074451
2959 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35534

Sequence Viewer

Length: 1638 bp
ATGCCTCCAAGCTGGAAACAAACGAAAATTGAGACCTGTCTATGCCGATCAACAACCTCCCTCACTATCAATCTAAGCGAGACGAAGAACCACAGCAGAGACCAAGATCGAACTCTCTCTCTCTCTCTCTCTCTCACTCTCTCTCCCCTGGCATATTCCTCACCCCAAACTACCAAGCACCACTCACCCGCTAAAGCAGAGCCCAAGGCCTCTCTTTCTTCCATCTTCTTCACTTCAAGAAAAGCCTCCTCCTTTGCTTATGGAATCGCCTTTGCTCTCATTGCCTTCACTTCCTTCTGGGTTTTCAACCCATCTGGCTACTCTTTCCCTTTTAGCTTCAACACCATCTTCTACTCTTCTCCTTCCAACTCTTCTCAGGAAGTTACTAAAACCCCAAAGATTGAATCTTTACCACATTTGGGCAGCAATGGAAGTTTGAACAGTGAAATGGGTGCTTCTCAGTTTTCCGGGAAGATGGGAGATCAGAGCAGAACTCAAATGGGTACCGATCAATCTTCAAAACCCATGATTTCTTTTCCCCAAGAACCCAATCAGACCAGAAATGAGTCTTCTTTTTCTGAAGGTTCTAGTGGGGAAAATGGTTTGCCAAGCTATATGATTCATACCCACTTTATGCTGCTGGGTCTTGTCCTTACATTGATGAATCTTTCAATTGTTTTCTCAATAGTAGCCCTGATAATGGTTATGAAAAAGTATAGATGGCAACCCAAAAACTGCAATCTCCCAAGGATGAATGGAAGGAACATGTTGGAATTATTGAGAGGAAAGCGTCTAGTTTTTGTTGGTGATTCTCTCAACACGAATATGTGGGAGTCTTTGGTTTGTCTTCTTAGGAATTCAGTGGATGATAAGAGCAGAGTTTTTGAAGCTTCTGGCAGGAGCGAATTTCATACAGAGGGCGCCTACTTTTTTGTATTCAAGGATTACAATTGTTCAGTGGAGTTTGTTCAATCACCATTTCTAGTTCAAGAATCGGAGGTGCTAACCACAAATGGGTCAAAGAAGGAAACACTGCGCCTGGATATGATTCAGAGATCCTTGGATAAGTACAAAAGTGCAGATGTTCTCGTCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGACTATATCTATAGTCAATTGAATGTCAAAGAGGCGTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTGTTGTTTTCTTCCGGGGCTATTCGCCCAATCACCTTAGTGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAATTCAATATGAGGCATACAAAGGAAAATATCCTGCAAAGATGAGAATACTGGACTCAGTAATCAGGGAAATGAAGATTCCAATCTTTTATCTGAATGTTACAAAAATGACTGATTTTCGGAGGGATGCTCACCCATCCATTTACAGAAAGCAGAATTTGACAGAGGAGGAGAGACAGTTGTCTTTGAGATCCCAGGATTGCAGTCATTGGTGCCTTCCTGGTGTTCCTGATACATGGAACGAGCTTCTATATGCTCATCTCCTTACATATACCCAGCAGCAGAGGAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

545

Amino Acids

62.19

Weight (kDa)

9.19

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 248 - 533 2.7e-100 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 503
AccB1I GGYRCC 3 cut(s) 503, 920, 1554
AciI CCGC 1 cut(s) 189
AclWI GGATC 2 cut(s) 1050, 1527
AcsI RAATTY 3 cut(s) 856, 905, 1498
AcuI CTGAAG 1 cut(s) 600
AcyI GRCGYC 1 cut(s) 921
AfaI GTAC 2 cut(s) 505, 1070
AfiI CCNNNNNNNGG 3 cut(s) 419, 700, 1014
AflIII ACRYGT 1 cut(s) 765
AjnI CCWGG 4 cut(s) 147, 1038, 1536, 1561
AleI CACNNNNGTG 1 cut(s) 1293
AluBI AGCT 6 cut(s) 12, 336, 612, 890, 1205, 1588
AluI AGCT 6 cut(s) 12, 336, 612, 890, 1205, 1588
Alw26I GTCTC 5 cut(s) 26, 74, 93, 1510, 1624
AlwI GGATC 2 cut(s) 1050, 1527
AoxI GGCC 2 cut(s) 207, 1218
ApeKI GCWGC 3 cut(s) 423, 637, 1621
ApoI RAATTY 3 cut(s) 856, 905, 1498
Asp718I GGTACC 1 cut(s) 503
AspLEI GCGC 2 cut(s) 923, 1038
AspS9I GGNCC 1 cut(s) 1218
AsuC2I CCSGG 2 cut(s) 469, 1271
AsuHPI GGTGA 7 cut(s) 153, 177, 818, 966, 1169, 1280, 1466
BanI GGYRCC 3 cut(s) 503, 920, 1554
BanII GRGCYC 1 cut(s) 204
BarI GAAGNNNNNNTAC 2 cut(s) 1294, 1326
BbsI GAAGAC 3 cut(s) 561, 839, 1084
BbvI GCAGC 3 cut(s) 435, 624, 1633
BccI CCATC 8 cut(s) 230, 319, 353, 469, 714, 1218, 1299, 1486
BciT130I CCWGG 4 cut(s) 149, 1040, 1538, 1563
BcnI CCSGG 2 cut(s) 469, 1271
BcoDI GTCTC 5 cut(s) 26, 74, 93, 1510, 1624
BfaI CTAG 3 cut(s) 588, 794, 983
BfmI CTRYAG 1 cut(s) 1168
BfoI RGCGCY 1 cut(s) 924
BisI GCNGC 3 cut(s) 424, 638, 1622
BlsI GCNGC 3 cut(s) 425, 639, 1623
Bme1390I CCNGG 6 cut(s) 149, 469, 1040, 1271, 1538, 1563
BmgT120I GGNCC 1 cut(s) 1218
BmiI GGNNCC 3 cut(s) 505, 922, 1556
BmrFI CCNGG 6 cut(s) 149, 469, 1040, 1271, 1538, 1563
BmsI GCATC 2 cut(s) 1222, 1459
BoxI GACNNNNGTC 1 cut(s) 1522
BpiI GAAGAC 3 cut(s) 561, 839, 1084
BplI GAGNNNNNCTC 4 cut(s) 478, 510, 1456, 1488
BpmI CTGGAG 1 cut(s) 1335
BpuMI CCSGG 2 cut(s) 469, 1271
BsaBI GATNNNNATC 1 cut(s) 1424
BsaHI GRCGYC 1 cut(s) 921
BsaI GGTCTC 3 cut(s) 26, 93, 1624
BsaJI CCNNGG 6 cut(s) 147, 204, 746, 1059, 1270, 1536
BsaXI ACNNNNNCTCC 4 cut(s) 127, 157, 1505, 1535
Bsc4I CCNNNNNNNGG 3 cut(s) 419, 700, 1014
Bse1I ACTGG 3 cut(s) 1112, 1318, 1398
Bse3DI GCAATG 2 cut(s) 279, 433
Bse8I GATNNNNATC 1 cut(s) 1424
BseBI CCWGG 4 cut(s) 149, 1040, 1538, 1563
BseDI CCNNGG 6 cut(s) 147, 204, 746, 1059, 1270, 1536
BseGI GGATG 5 cut(s) 756, 871, 1237, 1474, 1478
BseJI GATNNNNATC 1 cut(s) 1424
BseLI CCNNNNNNNGG 3 cut(s) 419, 700, 1014
BseMI GCAATG 2 cut(s) 279, 433
BseMII CTCAG 3 cut(s) 389, 473, 1413
BseNI ACTGG 3 cut(s) 1112, 1318, 1398
BseRI GAGGAG 3 cut(s) 238, 1523, 1526
BseXI GCAGC 3 cut(s) 435, 624, 1633
BseYI CCCAGC 2 cut(s) 640, 1617
BsgI GTGCAG 1 cut(s) 1098
BshFI GGCC 2 cut(s) 209, 1220
BshNI GGYRCC 3 cut(s) 503, 920, 1554
BsiSI CCGG 2 cut(s) 468, 1270
BslI CCNNNNNNNGG 3 cut(s) 419, 700, 1014
BsmAI GTCTC 5 cut(s) 26, 74, 93, 1510, 1624
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 2 cut(s) 209, 1220
Bso31I GGTCTC 3 cut(s) 26, 93, 1624
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 6 cut(s) 47, 106, 481, 508, 1055, 1532
BspACI CCGC 1 cut(s) 189
BspANI GGCC 2 cut(s) 209, 1220
BspCNI CTCAG 3 cut(s) 388, 472, 1412
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 3 cut(s) 505, 922, 1556
BspPI GGATC 2 cut(s) 1050, 1527
BspT107I GGYRCC 3 cut(s) 503, 920, 1554
BspTNI GGTCTC 3 cut(s) 26, 93, 1624
BsrDI GCAATG 2 cut(s) 279, 433
BsrI ACTGG 3 cut(s) 1112, 1318, 1398
BssECI CCNNGG 6 cut(s) 147, 204, 746, 1059, 1270, 1536
BssMI GATC 6 cut(s) 47, 106, 481, 508, 1055, 1532
BssNI GRCGYC 1 cut(s) 921
BssT1I CCWWGG 3 cut(s) 204, 746, 1059
Bst2UI CCWGG 4 cut(s) 149, 1040, 1538, 1563
Bst4CI ACNGT 3 cut(s) 443, 1258, 1521
Bst6I CTCTTC 2 cut(s) 361, 376
BstACI GRCGYC 1 cut(s) 921
BstDEI CTNAG 6 cut(s) 74, 375, 459, 851, 1292, 1399
BstF5I GGATG 5 cut(s) 756, 871, 1237, 1474, 1478
BstH2I RGCGCY 1 cut(s) 924
BstHHI GCGC 2 cut(s) 923, 1038
BstKTI GATC 6 cut(s) 50, 109, 484, 511, 1058, 1535
BstMAI GTCTC 5 cut(s) 26, 74, 93, 1510, 1624
BstMBI GATC 6 cut(s) 47, 106, 481, 508, 1055, 1532
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 4 cut(s) 149, 1040, 1538, 1563
BstNSI RCATGY 1 cut(s) 769
BstPAI GACNNNNGTC 1 cut(s) 1522
BstSCI CCNGG 6 cut(s) 147, 467, 1038, 1269, 1536, 1561
BstSFI CTRYAG 1 cut(s) 1168
BstV1I GCAGC 3 cut(s) 435, 624, 1633
BstV2I GAAGAC 3 cut(s) 561, 839, 1084
BstX2I RGATCY 2 cut(s) 1055, 1532
BstXI CCANNNNNNTGG 1 cut(s) 1228
BstYI RGATCY 2 cut(s) 1055, 1532
BsuRI GGCC 2 cut(s) 209, 1220
BtsCI GGATG 5 cut(s) 756, 871, 1237, 1474, 1478
BtsI GCAGTG 1 cut(s) 1031
BtsIMutI CAGTG 5 cut(s) 448, 867, 963, 1031, 1105
CciI TCATGA 1 cut(s) 1117
CfoI GCGC 2 cut(s) 923, 1038
Cfr13I GGNCC 1 cut(s) 1218
CseI GACGC 1 cut(s) 779
Csp6I GTAC 2 cut(s) 504, 1069
CviAII CATG 6 cut(s) 526, 766, 1118, 1215, 1328, 1578
CviQI GTAC 2 cut(s) 504, 1069
DdeI CTNAG 6 cut(s) 74, 375, 459, 851, 1292, 1399
DinI GGCGCC 1 cut(s) 922
DpnI GATC 6 cut(s) 49, 108, 483, 510, 1057, 1534
DpnII GATC 6 cut(s) 47, 106, 481, 508, 1055, 1532
Eam1104I CTCTTC 2 cut(s) 361, 376
EarI CTCTTC 2 cut(s) 361, 376
Eco130I CCWWGG 3 cut(s) 204, 746, 1059
Eco147I AGGCCT 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 3 cut(s) 26, 93, 1624
Eco57I CTGAAG 1 cut(s) 600
EcoRI GAATTC 1 cut(s) 856
EcoRII CCWGG 4 cut(s) 147, 1038, 1536, 1561
EcoT14I CCWWGG 3 cut(s) 204, 746, 1059
EcoT38I GRGCYC 1 cut(s) 204
EgeI GGCGCC 1 cut(s) 922
EheI GGCGCC 1 cut(s) 922
ErhI CCWWGG 3 cut(s) 204, 746, 1059
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 6 cut(s) 529, 769, 1121, 1218, 1331, 1581
FatI CATG 6 cut(s) 525, 765, 1117, 1214, 1327, 1577
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 424, 638, 1622
FokI GGATG 5 cut(s) 763, 878, 1244, 1465, 1481
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 3 cut(s) 424, 638, 1622
FspBI CTAG 3 cut(s) 588, 794, 983
GlaI GCGC 2 cut(s) 922, 1037
GluI GCNGC 3 cut(s) 424, 638, 1622
GsaI CCCAGC 2 cut(s) 644, 1621
GsuI CTGGAG 1 cut(s) 1335
HaeII RGCGCY 1 cut(s) 924
HaeIII GGCC 2 cut(s) 209, 1220
HapII CCGG 2 cut(s) 468, 1270
HgaI GACGC 1 cut(s) 779
HhaI GCGC 2 cut(s) 923, 1038
Hin1I GRCGYC 1 cut(s) 921
Hin1II CATG 6 cut(s) 529, 769, 1121, 1218, 1331, 1581
Hin6I GCGC 2 cut(s) 921, 1036
HinP1I GCGC 2 cut(s) 921, 1036
HindIII AAGCTT 1 cut(s) 888
HpaII CCGG 2 cut(s) 468, 1270
HphI GGTGA 7 cut(s) 153, 177, 818, 966, 1169, 1280, 1466
Hpy166II GTNNAC 1 cut(s) 1113
Hpy188I TCNGA 8 cut(s) 486, 555, 580, 997, 1053, 1335, 1437, 1464
Hpy188III TCNNGA 8 cut(s) 237, 377, 989, 1118, 1131, 1151, 1247, 1571
Hpy8I GTNNAC 1 cut(s) 1113
HpyAV CCTTC 7 cut(s) 295, 304, 372, 575, 753, 1018, 1568
HpyCH4III ACNGT 3 cut(s) 443, 1258, 1521
HpyCH4V TGCA 4 cut(s) 738, 1079, 1379, 1545
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 6 cut(s) 74, 375, 459, 851, 1292, 1399
Hsp92I GRCGYC 1 cut(s) 921
Hsp92II CATG 6 cut(s) 529, 769, 1121, 1218, 1331, 1581
HspAI GCGC 2 cut(s) 921, 1036
KasI GGCGCC 1 cut(s) 920
KpnI GGTACC 1 cut(s) 507
Kzo9I GATC 6 cut(s) 47, 106, 481, 508, 1055, 1532
LmnI GCTCC 1 cut(s) 900
Lsp1109I GCAGC 3 cut(s) 435, 624, 1633
LweI GCATC 2 cut(s) 1222, 1459
MaeI CTAG 3 cut(s) 588, 794, 983
MaeIII GTNAC 5 cut(s) 382, 1103, 1142, 1157, 1441
MalI GATC 6 cut(s) 49, 108, 483, 510, 1057, 1534
MboI GATC 6 cut(s) 47, 106, 481, 508, 1055, 1532
MfeI CAATTG 3 cut(s) 672, 949, 1175
MflI RGATCY 2 cut(s) 1055, 1532
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 9 cut(s) 27, 672, 773, 856, 905, 949, 1175, 1344, 1498
Mly113I GGCGCC 1 cut(s) 921
MlyI GAGTC 4 cut(s) 575, 842, 1108, 1391
MmeI TCCRAC 3 cut(s) 390, 750, 1313
MslI CAYNNNNRTG 2 cut(s) 824, 1293
MspI CCGG 2 cut(s) 468, 1270
MspR9I CCNGG 6 cut(s) 149, 469, 1040, 1271, 1538, 1563
MunI CAATTG 3 cut(s) 672, 949, 1175
MvaI CCWGG 4 cut(s) 149, 1040, 1538, 1563
MwoI GCNNNNNNNGC 1 cut(s) 281
NarI GGCGCC 1 cut(s) 921
NciI CCSGG 2 cut(s) 469, 1271
NdeII GATC 6 cut(s) 47, 106, 481, 508, 1055, 1532
NlaIII CATG 6 cut(s) 529, 769, 1121, 1218, 1331, 1581
NlaIV GGNNCC 3 cut(s) 505, 922, 1556
NmuCI GTSAC 2 cut(s) 1103, 1157
NspI RCATGY 1 cut(s) 769
OliI CACNNNNGTG 1 cut(s) 1293
PagI TCATGA 1 cut(s) 1117
PceI AGGCCT 1 cut(s) 209
PciI ACATGT 1 cut(s) 765
PfeI GAWTC 8 cut(s) 264, 404, 619, 664, 809, 992, 1048, 1420
PfoI TCCNGGA 1 cut(s) 467
PkrI GCNGC 3 cut(s) 425, 639, 1623
PleI GAGTC 4 cut(s) 574, 841, 1108, 1391
PluTI GGCGCC 1 cut(s) 924
PpsI GAGTC 4 cut(s) 574, 841, 1108, 1391
PscI ACATGT 1 cut(s) 765
PshAI GACNNNNGTC 1 cut(s) 1522
Psp6I CCWGG 4 cut(s) 147, 1038, 1536, 1561
PspFI CCCAGC 2 cut(s) 640, 1617
PspGI CCWGG 4 cut(s) 147, 1038, 1536, 1561
PspN4I GGNNCC 3 cut(s) 505, 922, 1556
PspPI GGNCC 1 cut(s) 1218
PsuI RGATCY 2 cut(s) 1055, 1532
RsaI GTAC 2 cut(s) 505, 1070
RsaNI GTAC 2 cut(s) 504, 1069
RseI CAYNNNNRTG 2 cut(s) 824, 1293
SatI GCNGC 3 cut(s) 424, 638, 1622
Sau3AI GATC 6 cut(s) 47, 106, 481, 508, 1055, 1532
Sau96I GGNCC 1 cut(s) 1218
SchI GAGTC 4 cut(s) 575, 842, 1108, 1391
ScrFI CCNGG 6 cut(s) 149, 469, 1040, 1271, 1538, 1563
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 2 cut(s) 1222, 1459
SfcI CTRYAG 1 cut(s) 1168
SfoI GGCGCC 1 cut(s) 922
SmiMI CAYNNNNRTG 2 cut(s) 824, 1293
Sse9I AATT 9 cut(s) 27, 672, 773, 856, 905, 949, 1175, 1344, 1498
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 1 cut(s) 189
SspDI GGCGCC 1 cut(s) 920
SspMI CTAG 3 cut(s) 588, 794, 983
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 6 cut(s) 147, 467, 1038, 1269, 1536, 1561
StyI CCWWGG 3 cut(s) 204, 746, 1059
TaaI ACNGT 3 cut(s) 443, 1258, 1521
TaqI TCGA 1 cut(s) 109
TasI AATT 9 cut(s) 27, 672, 773, 856, 905, 949, 1175, 1344, 1498
TatI WGTACW 1 cut(s) 1068
TfiI GAWTC 8 cut(s) 264, 404, 619, 664, 809, 992, 1048, 1420
TscAI CASTG 5 cut(s) 448, 867, 963, 1038, 1112
TseFI GTSAC 2 cut(s) 1103, 1157
TseI GCWGC 3 cut(s) 423, 637, 1621
Tsp45I GTSAC 2 cut(s) 1103, 1157
TspDTI ATGAA 6 cut(s) 611, 677, 722, 767, 899, 1430
TspRI CASTG 5 cut(s) 448, 867, 963, 1038, 1112
XapI RAATTY 3 cut(s) 856, 905, 1498
XceI RCATGY 1 cut(s) 769
XspI CTAG 3 cut(s) 588, 794, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.