Rh5CG573200

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001307
Physical Location & Seq
Reverse (-)
81202516 .. 81205303
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG573200.1

Sequence Viewer

Length: 1449 bp
ATGGCAGATTCCTCACCCCAAACTACAAAGCACCACTCACCCACTAAAGCAGAGCCCAAGGCTTCTCTTTCTTCCATCTTTTTCACTTCAAGAAAAGCCTCCGCCTTTGCTTATGGAATCGCCTTTGCTCTCATTGCCTTCACTTCCTTCTGGGTTTTCAACCCATCTGGCTACTCTTTCCCTTTTAGCTTCAACACCATCTTCTACTCTTCTCCTTCCAACTCTTCTCAGGAAGTTACTAAATCCCCAAAGATCGAATCTTTACCACATTTGGGCAGCAATGGAAGTTTGAACAGTGAAATGGGTGCTTCTCAGTTTTCCGGGAAGATGGGAAATCAGAGCAGTACTCAAATGGGTACTGATCAATCTTCAAAACCCGTGATTTCTTTGCCCCAAGAATCCAATCACACCAGAAATGAGTCTTCTTTTTCTGAAGGTTCTAGTGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGGTTGTCTGGGTTTGAGTTGATTAATGGTTGTGATTTGTTTGATGGAAGATGGGTGAGAGATGATTCATACCCACTTTATGCTGCTGGGTCTTGTCCTTACATTGATGAATCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGTTATGAAAAGTATAGATGGCAACCCAAAAACTGCAATCTCCCAAGGATGAATGGAAGGAACATGTTGGAATTATTGAGAGGAAAGCGTCTAGTTTTTGTTGGTGATTCTCTCAACAGGAATATGTGGGAGTCTTTGGTTTGTCTTCTTAGGAATTCAGTGGATGATAAGAGCAGAGTTTTTGAAGCTTCTGGCAGGAGCGAATTTCGTACAGAGGGCGCCTATTTTTTTGTATTCAAGGATTACAATTGTTCACTGGAGTTTGTTCAATCACCATTTCTAGTTCAAGAATCGGAGGTGCTAACCACAAATGGGTCAAAGAAGGAAACACTGCGCCTGGATATGATTCAGAGATCCTTGGATAAGTACAAAAGTGCAGATGTTCTCGTCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGAATATATCTATAGTCAATTGAATGTCAAAGAGGCGTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTGTTGTTTTCTTCCGGGGCTATTCGCCCAATCACTTTAGTGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAGTTCAATACGAGGCATACAAAGGAAAATATCCTGCAAAGATGAGAATACTGGACTCATATTCTTTTGTTGTAGTACTGGTCATCACTCATTACACTACACAAGATGAAATCCAGCAAGGACTTTCTTCATTAGGTTGTAATCTGGCAAAGGTCGATGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

482

Amino Acids

54.2

Weight (kDa)

7.99

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 175 - 227 9.5e-23 PMR5 N terminal Domain
PC-Esterase PF13839 228 - 443 3.4e-70 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 860
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 990
AcsI RAATTY 2 cut(s) 796, 845
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 5 cut(s) 346, 358, 853, 1010, 1359
AfiI CCNNNNNNNGG 3 cut(s) 272, 641, 954
AflIII ACRYGT 1 cut(s) 705
AjnI CCWGG 1 cut(s) 978
AleI CACNNNNGTG 1 cut(s) 1233
AluBI AGCT 4 cut(s) 189, 465, 830, 1145
AluI AGCT 4 cut(s) 189, 465, 830, 1145
AlwI GGATC 1 cut(s) 990
AoxI GGCC 2 cut(s) 632, 1158
ApeKI GCWGC 2 cut(s) 276, 578
ApoI RAATTY 2 cut(s) 796, 845
AseI ATTAAT 1 cut(s) 519
AspLEI GCGC 2 cut(s) 863, 978
AspS9I GGNCC 1 cut(s) 1158
AsuC2I CCSGG 2 cut(s) 322, 1211
AsuHPI GGTGA 6 cut(s) 6, 30, 562, 758, 906, 1109
BanI GGYRCC 1 cut(s) 860
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 1234, 1266
BbsI GAAGAC 3 cut(s) 414, 779, 1024
BbvI GCAGC 2 cut(s) 288, 565
BccI CCATC 9 cut(s) 83, 172, 206, 322, 533, 540, 654, 1158, 1239
BciT130I CCWGG 1 cut(s) 980
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 2 cut(s) 322, 1211
BfaI CTAG 3 cut(s) 441, 734, 923
BfmI CTRYAG 1 cut(s) 1108
BfoI RGCGCY 1 cut(s) 864
BisI GCNGC 2 cut(s) 277, 579
BlsI GCNGC 2 cut(s) 278, 580
BmcAI AGTACT 2 cut(s) 346, 1359
Bme1390I CCNGG 3 cut(s) 322, 980, 1211
BmgT120I GGNCC 1 cut(s) 1158
BmiI GGNNCC 1 cut(s) 862
BmrFI CCNGG 3 cut(s) 322, 980, 1211
BmsI GCATC 1 cut(s) 1162
BpiI GAAGAC 3 cut(s) 414, 779, 1024
BplI GAGNNNNNCTC 2 cut(s) 331, 363
BpmI CTGGAG 2 cut(s) 920, 1275
BpuMI CCSGG 2 cut(s) 322, 1211
BsaHI GRCGYC 1 cut(s) 861
BsaJI CCNNGG 4 cut(s) 57, 686, 999, 1210
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 641, 954
Bse1I ACTGG 6 cut(s) 903, 1052, 1258, 1283, 1338, 1365
Bse3DI GCAATG 3 cut(s) 132, 286, 496
BseBI CCWGG 1 cut(s) 980
BseDI CCNNGG 4 cut(s) 57, 686, 999, 1210
BseGI GGATG 3 cut(s) 696, 811, 1177
BseLI CCNNNNNNNGG 3 cut(s) 272, 641, 954
BseMI GCAATG 3 cut(s) 132, 286, 496
BseMII CTCAG 2 cut(s) 242, 326
BseNI ACTGG 6 cut(s) 903, 1052, 1258, 1283, 1338, 1365
BseXI GCAGC 2 cut(s) 288, 565
BseYI CCCAGC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 1038
BshFI GGCC 2 cut(s) 634, 1160
BshNI GGYRCC 1 cut(s) 860
BsiSI CCGG 2 cut(s) 321, 1210
BslI CCNNNNNNNGG 3 cut(s) 272, 641, 954
BsnI GGCC 2 cut(s) 634, 1160
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 252, 361, 995
BspACI CCGC 1 cut(s) 102
BspANI GGCC 2 cut(s) 634, 1160
BspCNI CTCAG 2 cut(s) 241, 325
BspHI TCATGA 1 cut(s) 1057
BspLI GGNNCC 1 cut(s) 862
BspPI GGATC 1 cut(s) 990
BspT107I GGYRCC 1 cut(s) 860
BsrDI GCAATG 3 cut(s) 132, 286, 496
BsrI ACTGG 6 cut(s) 903, 1052, 1258, 1283, 1338, 1365
BssECI CCNNGG 4 cut(s) 57, 686, 999, 1210
BssMI GATC 3 cut(s) 252, 361, 995
BssNI GRCGYC 1 cut(s) 861
BssT1I CCWWGG 3 cut(s) 57, 686, 999
Bst2UI CCWGG 1 cut(s) 980
Bst4CI ACNGT 2 cut(s) 296, 1198
Bst6I CTCTTC 2 cut(s) 214, 229
BstACI GRCGYC 1 cut(s) 861
BstDEI CTNAG 3 cut(s) 228, 312, 791
BstF5I GGATG 3 cut(s) 696, 811, 1177
BstH2I RGCGCY 1 cut(s) 864
BstHHI GCGC 2 cut(s) 863, 978
BstKTI GATC 3 cut(s) 255, 364, 998
BstMBI GATC 3 cut(s) 252, 361, 995
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 980
BstNSI RCATGY 1 cut(s) 709
BstSCI CCNGG 3 cut(s) 320, 978, 1209
BstSFI CTRYAG 1 cut(s) 1108
BstV1I GCAGC 2 cut(s) 288, 565
BstV2I GAAGAC 3 cut(s) 414, 779, 1024
BstX2I RGATCY 1 cut(s) 995
BstXI CCANNNNNNTGG 1 cut(s) 1168
BstYI RGATCY 1 cut(s) 995
BsuRI GGCC 2 cut(s) 634, 1160
BtsCI GGATG 3 cut(s) 696, 811, 1177
BtsI GCAGTG 1 cut(s) 971
BtsIMutI CAGTG 5 cut(s) 301, 807, 896, 971, 1045
CciI TCATGA 1 cut(s) 1057
CfoI GCGC 2 cut(s) 863, 978
Cfr13I GGNCC 1 cut(s) 1158
CseI GACGC 1 cut(s) 719
Csp6I GTAC 5 cut(s) 345, 357, 852, 1009, 1358
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 4 cut(s) 706, 1058, 1155, 1268
CviQI GTAC 5 cut(s) 345, 357, 852, 1009, 1358
DdeI CTNAG 3 cut(s) 228, 312, 791
DinI GGCGCC 1 cut(s) 862
DpnI GATC 3 cut(s) 254, 363, 997
DpnII GATC 3 cut(s) 252, 361, 995
Eam1104I CTCTTC 2 cut(s) 214, 229
EarI CTCTTC 2 cut(s) 214, 229
EciI GGCGGA 1 cut(s) 91
Eco130I CCWWGG 3 cut(s) 57, 686, 999
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 978
EcoT14I CCWWGG 3 cut(s) 57, 686, 999
EcoT38I GRGCYC 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 862
EheI GGCGCC 1 cut(s) 862
ErhI CCWWGG 3 cut(s) 57, 686, 999
FaeI CATG 4 cut(s) 709, 1061, 1158, 1271
FatI CATG 4 cut(s) 705, 1057, 1154, 1267
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 277, 579
FokI GGATG 3 cut(s) 703, 818, 1184
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 277, 579
FspBI CTAG 3 cut(s) 441, 734, 923
GlaI GCGC 2 cut(s) 862, 977
GluI GCNGC 2 cut(s) 277, 579
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 2 cut(s) 920, 1275
HaeII RGCGCY 1 cut(s) 864
HaeIII GGCC 2 cut(s) 634, 1160
HapII CCGG 2 cut(s) 321, 1210
HgaI GACGC 1 cut(s) 719
HhaI GCGC 2 cut(s) 863, 978
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 4 cut(s) 709, 1061, 1158, 1271
Hin6I GCGC 2 cut(s) 861, 976
HinP1I GCGC 2 cut(s) 861, 976
HindIII AAGCTT 1 cut(s) 828
HpaII CCGG 2 cut(s) 321, 1210
HphI GGTGA 6 cut(s) 6, 30, 562, 758, 906, 1109
Hpy166II GTNNAC 2 cut(s) 896, 1053
Hpy188I TCNGA 5 cut(s) 339, 433, 937, 993, 1275
Hpy188III TCNNGA 7 cut(s) 90, 230, 929, 1058, 1071, 1091, 1187
Hpy8I GTNNAC 2 cut(s) 896, 1053
HpyAV CCTTC 6 cut(s) 148, 157, 225, 428, 693, 958
HpyCH4III ACNGT 2 cut(s) 296, 1198
HpyCH4V TGCA 3 cut(s) 678, 1019, 1319
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 3 cut(s) 228, 312, 791
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 4 cut(s) 709, 1061, 1158, 1271
HspAI GCGC 2 cut(s) 861, 976
KasI GGCGCC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 3 cut(s) 252, 361, 995
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 2 cut(s) 288, 565
LweI GCATC 1 cut(s) 1162
MaeI CTAG 3 cut(s) 441, 734, 923
MaeIII GTNAC 3 cut(s) 235, 1043, 1082
MalI GATC 3 cut(s) 254, 363, 997
MboI GATC 3 cut(s) 252, 361, 995
MfeI CAATTG 3 cut(s) 613, 889, 1115
MflI RGATCY 1 cut(s) 995
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 6 cut(s) 613, 713, 796, 845, 889, 1115
Mly113I GGCGCC 1 cut(s) 861
MlyI GAGTC 4 cut(s) 428, 782, 1048, 1331
MmeI TCCRAC 3 cut(s) 243, 690, 1253
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 1233
MspI CCGG 2 cut(s) 321, 1210
MspR9I CCNGG 3 cut(s) 322, 980, 1211
MunI CAATTG 3 cut(s) 613, 889, 1115
MvaI CCWGG 1 cut(s) 980
MwoI GCNNNNNNNGC 1 cut(s) 134
NarI GGCGCC 1 cut(s) 861
NciI CCSGG 2 cut(s) 322, 1211
NdeII GATC 3 cut(s) 252, 361, 995
NlaIII CATG 4 cut(s) 709, 1061, 1158, 1271
NlaIV GGNNCC 1 cut(s) 862
NmuCI GTSAC 1 cut(s) 1043
NspI RCATGY 1 cut(s) 709
OliI CACNNNNGTG 1 cut(s) 1233
PagI TCATGA 1 cut(s) 1057
PceI AGGCCT 1 cut(s) 634
PciI ACATGT 1 cut(s) 705
PfeI GAWTC 9 cut(s) 8, 117, 257, 398, 560, 605, 749, 932, 988
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 2 cut(s) 278, 580
PleI GAGTC 4 cut(s) 427, 781, 1048, 1331
PluTI GGCGCC 1 cut(s) 864
PpsI GAGTC 4 cut(s) 427, 781, 1048, 1331
PscI ACATGT 1 cut(s) 705
PshBI ATTAAT 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 978
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 1 cut(s) 978
PspN4I GGNNCC 1 cut(s) 862
PspPI GGNCC 1 cut(s) 1158
PsuI RGATCY 1 cut(s) 995
RsaI GTAC 5 cut(s) 346, 358, 853, 1010, 1359
RsaNI GTAC 5 cut(s) 345, 357, 852, 1009, 1358
RseI CAYNNNNRTG 1 cut(s) 1233
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 2 cut(s) 277, 579
Sau3AI GATC 3 cut(s) 252, 361, 995
Sau96I GGNCC 1 cut(s) 1158
ScaI AGTACT 2 cut(s) 346, 1359
SchI GAGTC 4 cut(s) 428, 782, 1048, 1331
ScrFI CCNGG 3 cut(s) 322, 980, 1211
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 1 cut(s) 1162
SfcI CTRYAG 1 cut(s) 1108
SfoI GGCGCC 1 cut(s) 862
SmiMI CAYNNNNRTG 1 cut(s) 1233
Sse9I AATT 6 cut(s) 613, 713, 796, 845, 889, 1115
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 1 cut(s) 102
SspDI GGCGCC 1 cut(s) 860
SspMI CTAG 3 cut(s) 441, 734, 923
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 3 cut(s) 320, 978, 1209
StyI CCWWGG 3 cut(s) 57, 686, 999
TaaI ACNGT 2 cut(s) 296, 1198
TaqI TCGA 2 cut(s) 255, 1437
TasI AATT 6 cut(s) 613, 713, 796, 845, 889, 1115
TatI WGTACW 3 cut(s) 344, 1008, 1357
TfiI GAWTC 9 cut(s) 8, 117, 257, 398, 560, 605, 749, 932, 988
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 5 cut(s) 301, 807, 903, 978, 1052
TseFI GTSAC 1 cut(s) 1043
TseI GCWGC 2 cut(s) 276, 578
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 6 cut(s) 552, 618, 663, 707, 1401, 1404
TspRI CASTG 5 cut(s) 301, 807, 903, 978, 1052
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 2 cut(s) 796, 845
XceI RCATGY 1 cut(s) 709
XspI CTAG 3 cut(s) 441, 734, 923
ZrmI AGTACT 2 cut(s) 346, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.