MD03G1013400.v1.1

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0001307
Physical Location & Seq
Forward (+)
1063262 .. 1064384
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1013400.v1.1.491

Sequence Viewer

Length: 822 bp
ATGTGGGAGTCTTTGCTATGTGTTCTTAGAAACTCAGTGGATGATAAGAACAAAGTCTATGAAGTTTCTGGTAGGCAAGAATTTCGCACAGAGGGCTCTTACTCCTTTGTTTTCGAGGAGTACAACTGTTCCGTGGAGTTCTTTCAATCACGGTTTCTAGTTCAAGAATGGGAGATGCTGGAACCAAGTGGATCAAAGAAGGAAACGCTTCGCATTGATTTGATTGAGAGATCCTCTGACAACTACAAAAATGCAGATGTTCTCATCTTCAACACAGGTCACTGGAAGGGTTACTATCAAGAGGGTAGCCATATTTATGGTGAACTGAATGTTGACGATGCATTTCGCAAGGCTTTAACGACATGGGCTCGATGGATAGACACCAATGTAAATCCTAAGAAAACTGCTGTTTTCTTCCGGGGCTATTCACCTTCTCACTTTAGAGGCGGAGCATGGAATTCTGGAGGGCATTGCCATGGCGAAACAAAGCCAACTACCAGCTTGGAATCCACGGAATATGGAGGAGCGTATCCAACAAACATGAAAATCTTTGACTCGGTACTCAAGGGGATGAAGACGCCAGTCAACTATCTGAACATTACAACAATGACTGATTTTCGGAAGGATGCTCATCCATCGATTTACAGAAAGCCGAATTTAACTGAGGAGGAGCGAAAACCGCCTATGATCCACGATTGCAGTCACTGGTGCCTCCCTGGCGTTCCTGATACATGGAACGTGCTAATATATGCTCAACTCCTCAAACATAACCAGAAACAACATAGACAGAAGAAACAGCAAAATCAGAGGACAACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

274

Amino Acids

31.83

Weight (kDa)

8.17

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 1 - 251 2.3e-76 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 708
AciI CCGC 2 cut(s) 447, 680
AclWI GGATC 3 cut(s) 199, 225, 682
AcsI RAATTY 3 cut(s) 80, 457, 655
AcyI GRCGYC 1 cut(s) 578
AfaI GTAC 2 cut(s) 122, 561
AgsI TTSAA 3 cut(s) 146, 164, 271
AjnI CCWGG 1 cut(s) 715
AluBI AGCT 1 cut(s) 501
AluI AGCT 1 cut(s) 501
AlwI GGATC 3 cut(s) 199, 225, 682
AlwNI CAGNNNCTG 1 cut(s) 705
ApoI RAATTY 3 cut(s) 80, 457, 655
Asp700I GAANNNNTTC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 332, 420
BanI GGYRCC 1 cut(s) 708
BanII GRGCYC 2 cut(s) 98, 370
BbsI GAAGAC 1 cut(s) 581
BccI CCATC 2 cut(s) 366, 643
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 717
BciVI GTATCC 1 cut(s) 540
BcnI CCSGG 1 cut(s) 419
BfaI CTAG 1 cut(s) 158
BfuI GTATCC 1 cut(s) 540
BglI GCCNNNNNGGC 1 cut(s) 717
Bme1390I CCNGG 2 cut(s) 419, 717
BmiI GGNNCC 2 cut(s) 183, 710
BmrFI CCNGG 2 cut(s) 419, 717
BmsI GCATC 3 cut(s) 165, 328, 616
BoxI GACNNNNGTC 1 cut(s) 581
BpiI GAAGAC 1 cut(s) 581
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpmI CTGGAG 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 548
BpuMI CCSGG 1 cut(s) 419
Bsa29I ATCGAT 1 cut(s) 638
BsaBI GATNNNNATC 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 578
BsaJI CCNNGG 5 cut(s) 132, 418, 475, 510, 715
Bse1I ACTGG 3 cut(s) 287, 581, 710
Bse3DI GCAATG 1 cut(s) 469
Bse8I GATNNNNATC 1 cut(s) 630
BseBI CCWGG 1 cut(s) 717
BseCI ATCGAT 1 cut(s) 638
BseDI CCNNGG 5 cut(s) 132, 418, 475, 510, 715
BseGI GGATG 4 cut(s) 46, 576, 631, 631
BseJI GATNNNNATC 1 cut(s) 630
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 2 cut(s) 48, 654
BseNI ACTGG 3 cut(s) 287, 581, 710
BseRI GAGGAG 5 cut(s) 131, 537, 680, 683, 749
BshNI GGYRCC 1 cut(s) 708
BshVI ATCGAT 1 cut(s) 638
BsiSI CCGG 1 cut(s) 418
Bsp1286I GDGCHC 2 cut(s) 98, 370
Bsp143I GATC 3 cut(s) 191, 230, 687
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 2 cut(s) 447, 680
BspCNI CTCAG 2 cut(s) 47, 655
BspDI ATCGAT 1 cut(s) 638
BspLI GGNNCC 2 cut(s) 183, 710
BspPI GGATC 3 cut(s) 199, 225, 682
BspT107I GGYRCC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 469
BsrI ACTGG 3 cut(s) 287, 581, 710
BssECI CCNNGG 5 cut(s) 132, 418, 475, 510, 715
BssMI GATC 3 cut(s) 191, 230, 687
BssNI GRCGYC 1 cut(s) 578
BssT1I CCWWGG 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 2 cut(s) 128, 153
BstACI GRCGYC 1 cut(s) 578
BstDEI CTNAG 4 cut(s) 26, 34, 396, 663
BstDSI CCRYGG 3 cut(s) 132, 475, 510
BstF5I GGATG 4 cut(s) 46, 576, 631, 631
BstKTI GATC 3 cut(s) 194, 233, 690
BstMBI GATC 3 cut(s) 191, 230, 687
BstMWI GCNNNNNNNGC 3 cut(s) 93, 679, 717
BstNI CCWGG 1 cut(s) 717
BstPAI GACNNNNGTC 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 417, 715
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 317
BstYI RGATCY 1 cut(s) 230
Bsu15I ATCGAT 1 cut(s) 638
BsuI GTATCC 1 cut(s) 540
BsuTUI ATCGAT 1 cut(s) 638
BtgI CCRYGG 3 cut(s) 132, 475, 510
BtsCI GGATG 4 cut(s) 46, 576, 631, 631
BtsIMutI CAGTG 3 cut(s) 42, 280, 703
CaiI CAGNNNCTG 1 cut(s) 705
ClaI ATCGAT 1 cut(s) 638
CseI GACGC 1 cut(s) 586
Csp6I GTAC 2 cut(s) 121, 560
CviAII CATG 5 cut(s) 363, 453, 476, 541, 732
CviJI RGCY 8 cut(s) 96, 309, 353, 368, 423, 490, 501, 652
CviKI_1 RGCY 8 cut(s) 96, 309, 353, 368, 423, 490, 501, 652
CviQI GTAC 2 cut(s) 121, 560
DdeI CTNAG 4 cut(s) 26, 34, 396, 663
DpnI GATC 3 cut(s) 193, 232, 689
DpnII GATC 3 cut(s) 191, 230, 687
EciI GGCGGA 1 cut(s) 462
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 2 cut(s) 98, 370
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 715
EcoT14I CCWWGG 1 cut(s) 475
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 2 cut(s) 98, 370
ErhI CCWWGG 1 cut(s) 475
FaeI CATG 5 cut(s) 366, 456, 479, 544, 735
FatI CATG 5 cut(s) 362, 452, 475, 540, 731
FokI GGATG 4 cut(s) 53, 583, 618, 638
FriOI GRGCYC 2 cut(s) 98, 370
FspBI CTAG 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 483
HapII CCGG 1 cut(s) 418
HgaI GACGC 1 cut(s) 586
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 5 cut(s) 366, 456, 479, 544, 735
HincII GTYRAC 2 cut(s) 334, 586
HindII GTYRAC 2 cut(s) 334, 586
HinfI GANTC 3 cut(s) 8, 506, 554
HpaII CCGG 1 cut(s) 418
HphI GGTGA 2 cut(s) 332, 420
Hpy166II GTNNAC 3 cut(s) 323, 334, 586
Hpy188I TCNGA 4 cut(s) 238, 594, 621, 807
Hpy188III TCNNGA 4 cut(s) 164, 299, 462, 725
Hpy8I GTNNAC 3 cut(s) 323, 334, 586
HpyAV CCTTC 4 cut(s) 193, 280, 441, 616
HpyCH4III ACNGT 2 cut(s) 128, 153
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 3 cut(s) 254, 341, 699
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 679, 717
HpyF3I CTNAG 4 cut(s) 26, 34, 396, 663
HpySE526I ACGT 1 cut(s) 738
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 5 cut(s) 366, 456, 479, 544, 735
Kzo9I GATC 3 cut(s) 191, 230, 687
LmnI GCTCC 3 cut(s) 449, 524, 670
LweI GCATC 3 cut(s) 165, 328, 616
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 3 cut(s) 278, 290, 701
MalI GATC 3 cut(s) 193, 232, 689
MboI GATC 3 cut(s) 191, 230, 687
MboII GAAGA 4 cut(s) 259, 406, 586, 802
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 2 cut(s) 98, 370
MluCI AATT 3 cut(s) 80, 457, 655
MlyI GAGTC 2 cut(s) 17, 548
MmeI TCCRAC 1 cut(s) 557
Mph1103I ATGCAT 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 3 cut(s) 356, 659, 820
MslI CAYNNNNRTG 2 cut(s) 315, 474
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 2 cut(s) 419, 717
MvaI CCWGG 1 cut(s) 717
MwoI GCNNNNNNNGC 3 cut(s) 93, 679, 717
NciI CCSGG 1 cut(s) 419
NcoI CCATGG 1 cut(s) 475
NdeII GATC 3 cut(s) 191, 230, 687
NlaIII CATG 5 cut(s) 366, 456, 479, 544, 735
NlaIV GGNNCC 2 cut(s) 183, 710
NmuCI GTSAC 2 cut(s) 278, 701
NsiI ATGCAT 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 506
PleI GAGTC 2 cut(s) 16, 548
PpsI GAGTC 2 cut(s) 16, 548
PshAI GACNNNNGTC 1 cut(s) 581
Psp6I CCWGG 1 cut(s) 715
PspGI CCWGG 1 cut(s) 715
PspN4I GGNNCC 2 cut(s) 183, 710
PstNI CAGNNNCTG 1 cut(s) 705
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 2 cut(s) 122, 561
RsaNI GTAC 2 cut(s) 121, 560
RseI CAYNNNNRTG 2 cut(s) 315, 474
SaqAI TTAA 3 cut(s) 356, 659, 820
Sau3AI GATC 3 cut(s) 191, 230, 687
SchI GAGTC 2 cut(s) 17, 548
ScrFI CCNGG 2 cut(s) 419, 717
SduI GDGCHC 2 cut(s) 98, 370
SetI ASST 4 cut(s) 280, 433, 503, 741
SfaNI GCATC 3 cut(s) 165, 328, 616
SmiMI CAYNNNNRTG 2 cut(s) 315, 474
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 3 cut(s) 80, 457, 655
SsiI CCGC 2 cut(s) 447, 680
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 417, 715
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 2 cut(s) 128, 153
TaiI ACGT 1 cut(s) 741
TaqI TCGA 3 cut(s) 114, 370, 638
TasI AATT 3 cut(s) 80, 457, 655
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 3 cut(s) 356, 659, 820
Tru9I TTAA 3 cut(s) 356, 659, 820
TscAI CASTG 3 cut(s) 42, 287, 710
TseFI GTSAC 2 cut(s) 278, 701
Tsp45I GTSAC 2 cut(s) 278, 701
TspDTI ATGAA 3 cut(s) 75, 557, 587
TspGWI ACGGA 2 cut(s) 121, 527
TspRI CASTG 3 cut(s) 42, 287, 710
XapI RAATTY 3 cut(s) 80, 457, 655
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.