Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001307

Physical Location & Seq

Genomic Coordinates Forward (+)

2933362 .. 2935539

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGTGCTTCTGAGTTTTCAAGGAAGATGGGAAATCAGAGCAGTACTCAAATGGGTACTGACCAATCTTCAAAACCCATGATTTCGTTGCCTCAAGAATCCAATCGGACCAGAAATGAGTCATCTTTTCCTGAGGGTTCTAATGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGATTGTCTGGGTTTGAGTTGATGAATGGTTGTGATTTGTTTAATGGAAGATGGGTGAGAGATGATTCATACCCAGTTTATGCTGCTGGGTCATGTCCTTACATTGATGAGTCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGTTATGAAAATGGAGTTTGTTCAATCACCGTTTCTAGTTCCAGAATCGGAGGTGCTAACCATAAATGGGTCAAAGAAGGAAACACCGCCTGGATATGGTTCAGAGATCCTTGGATAAGTACAAAAGGGCAGATGTTCTTGTCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGCTATATCAACTGAATGTTAAAGAGGCGTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTATTGTTTTCTTCCGGGGCTATTCACTTAATCACTTTAGCGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAATTCAATACGAGGCATACAAAGGAAAATATGCGGCAAAGATGAGAATACTGGACTCAGTAATTAGGGAAATGAAGACTCCAATCTTTTATCTGAATGTTACAAAAATGACTGATTTTCAGCGGGATGCTCATCCATCCATTTACAGAAAGCAGAATTTGAGAGGAGGAGAGACAGCTGTCTTTGCGATCCCAGGATTGCAGTCATTGGTGCCTCCCTGGTGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

318

Amino Acids

35.68

Weight (kDa)

9.22

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	75 - 117	1.3e-15	PMR5 N terminal Domain
PC-Esterase	PF13839	182 - 295	8.1e-31	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49340
fragaria_vesca	FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44460 FvH4_3g44460 FvH4_3g44460
malus_domestica	MD03G1012500.v1.1 MD03G1012600.v1.1 MD03G1013000.v1.1 MD03G1013100.v1.1 MD03G1013400.v1.1 MD03G1013500.v1.1 MD11G1015200.v1.1
prunus_persica	Prupe.6G013100_v2.0.a1 Prupe.6G013300_v2.0.a1
pyrus_communis	pycom02g13780 pycom03g01130
rosa_chinensis	RchiOBHm_Chr5g0081011 RchiOBHm_Chr5g0081071 RchiOBHm_Chr5g0081121 RchiOBHm_Chr5g0081131
rosa_laevigata	RLG00000036911 RLG00000036913
rosa_multiflora	Rmu_sc0006274.1_g000005 Rmu_ssc0000432.1_g000079 Rmu_ssc0000432.1_g000080 Rmu_ssc0000432.1_g000113 Rmu_ssc0000432.1_g000119
rosa_roxburghii	Rroxscaffold_1G00002310 Rroxscaffold_1G00002320 Rroxscaffold_1G00002470
rosa_rugosa	Rorug05G0473500 Rorug05G0473600
rosa_samantha	Rh5AG525800 Rh5AG526000 Rh5AG526100 Rh5BG549700 Rh5BG549900 Rh5BG550300 Rh5BG550400 Rh5CG572600 Rh5CG573200 Rh5CG573300 Rh5DG560000 Rh5DG560100
rosa_wichuraiana	Rw0G002560 Rw0G002570 Rw0G012050 Rw5G048870 Rw5G048880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	937
AciI	CCGC	4 cut(s)	429, 681, 761, 850
AclWI	GGATC	2 cut(s)	443, 910
AcsI	RAATTY	1 cut(s)	883
AfaI	GTAC	3 cut(s)	46, 58, 463
AfiI	CCNNNNNNNGG	3 cut(s)	341, 409, 438
AgsI	TTSAA	7 cut(s)	21, 72, 178, 313, 366, 489, 734
AjnI	CCWGG	3 cut(s)	431, 919, 944
AluBI	AGCT	3 cut(s)	165, 590, 905
AluI	AGCT	3 cut(s)	165, 590, 905
Alw26I	GTCTC	1 cut(s)	893
AlwI	GGATC	2 cut(s)	443, 910
AoxI	GGCC	2 cut(s)	332, 603
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	883
AspS9I	GGNCC	2 cut(s)	108, 603
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	2 cut(s)	262, 361
AvaII	GGWCC	1 cut(s)	108
AxyI	CCTNAGG	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	937
BarI	GAAGNNNNNNTAC	2 cut(s)	679, 711
BbsI	GAAGAC	2 cut(s)	477, 809
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	5 cut(s)	22, 240, 603, 684, 871
BciT130I	CCWGG	3 cut(s)	433, 921, 946
BcnI	CCSGG	1 cut(s)	656
BcoDI	GTCTC	1 cut(s)	893
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	279, 762
BlsI	GCNGC	2 cut(s)	280, 763
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	4 cut(s)	433, 656, 921, 946
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	108, 603
BmiI	GGNNCC	1 cut(s)	939
BmrFI	CCNGG	4 cut(s)	433, 656, 921, 946
BmrI	ACTGGG	1 cut(s)	263
BmsI	GCATC	2 cut(s)	607, 844
BmuI	ACTGGG	1 cut(s)	263
BoxI	GACNNNNGTC	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	477, 809
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	656
BsaBI	GATNNNNATC	1 cut(s)	858
BsaJI	CCNNGG	4 cut(s)	452, 655, 919, 944
Bsc4I	CCNNNNNNNGG	3 cut(s)	341, 409, 438
Bse1I	ACTGG	4 cut(s)	269, 505, 703, 783
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	858
BseBI	CCWGG	3 cut(s)	433, 921, 946
BseDI	CCNNGG	4 cut(s)	452, 655, 919, 944
BseGI	GGATG	4 cut(s)	622, 859, 859, 863
BseJI	GATNNNNATC	1 cut(s)	858
BseLI	CCNNNNNNNGG	3 cut(s)	341, 409, 438
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	123, 798
BseNI	ACTGG	4 cut(s)	269, 505, 703, 783
BseRI	GAGGAG	2 cut(s)	906, 909
BseXI	GCAGC	1 cut(s)	265
BseYI	CCCAGC	1 cut(s)	281
BshFI	GGCC	2 cut(s)	334, 605
BshNI	GGYRCC	1 cut(s)	937
BsiSI	CCGG	1 cut(s)	655
BslI	CCNNNNNNNGG	3 cut(s)	341, 409, 438
BsmAI	GTCTC	1 cut(s)	893
BsnI	GGCC	2 cut(s)	334, 605
Bsp143I	GATC	2 cut(s)	448, 915
BspACI	CCGC	4 cut(s)	429, 681, 761, 850
BspANI	GGCC	2 cut(s)	334, 605
BspCNI	CTCAG	3 cut(s)	4, 124, 797
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	939
BspPI	GGATC	2 cut(s)	443, 910
BspT107I	GGYRCC	1 cut(s)	937
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	4 cut(s)	269, 505, 703, 783
BssECI	CCNNGG	4 cut(s)	452, 655, 919, 944
BssMI	GATC	2 cut(s)	448, 915
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	3 cut(s)	433, 921, 946
Bst4CI	ACNGT	1 cut(s)	373
BstDEI	CTNAG	3 cut(s)	12, 132, 784
BstF5I	GGATG	4 cut(s)	622, 859, 859, 863
BstKTI	GATC	2 cut(s)	451, 918
BstMAI	GTCTC	1 cut(s)	893
BstMBI	GATC	2 cut(s)	448, 915
BstMWI	GCNNNNNNNGC	1 cut(s)	911
BstNI	CCWGG	3 cut(s)	433, 921, 946
BstPAI	GACNNNNGTC	1 cut(s)	905
BstSCI	CCNGG	4 cut(s)	431, 654, 919, 944
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	2 cut(s)	477, 809
BstX2I	RGATCY	1 cut(s)	448
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	448
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	334, 605
BtsCI	GGATG	4 cut(s)	622, 859, 859, 863
BtsIMutI	CAGTG	1 cut(s)	498
CciI	TCATGA	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	108, 603
Csp6I	GTAC	3 cut(s)	45, 57, 462
CspCI	CAANNNNNGTGG	2 cut(s)	150, 185
CviAII	CATG	5 cut(s)	79, 288, 511, 600, 713
CviJI	RGCY	8 cut(s)	165, 334, 590, 605, 613, 660, 727, 905
CviKI_1	RGCY	8 cut(s)	165, 334, 590, 605, 613, 660, 727, 905
CviQI	GTAC	3 cut(s)	45, 57, 462
DdeI	CTNAG	3 cut(s)	12, 132, 784
DpnI	GATC	2 cut(s)	450, 917
DpnII	GATC	2 cut(s)	448, 915
Eco130I	CCWWGG	1 cut(s)	452
Eco147I	AGGCCT	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	108
Eco81I	CCTNAGG	1 cut(s)	132
EcoRII	CCWGG	3 cut(s)	431, 919, 944
EcoT14I	CCWWGG	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	452
FaeI	CATG	5 cut(s)	82, 291, 514, 603, 716
FatI	CATG	5 cut(s)	78, 287, 510, 599, 712
FauI	CCCGC	1 cut(s)	843
Fnu4HI	GCNGC	2 cut(s)	279, 762
FokI	GGATG	4 cut(s)	629, 846, 850, 866
Fsp4HI	GCNGC	2 cut(s)	279, 762
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	2 cut(s)	279, 762
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	334, 605
HapII	CCGG	1 cut(s)	655
Hin1II	CATG	5 cut(s)	82, 291, 514, 603, 716
HinfI	GANTC	8 cut(s)	98, 119, 260, 305, 387, 507, 782, 805
HpaII	CCGG	1 cut(s)	655
HphI	GGTGA	2 cut(s)	262, 361
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	7 cut(s)	13, 39, 108, 392, 446, 720, 822
Hpy188III	TCNNGA	8 cut(s)	95, 131, 384, 511, 524, 544, 632, 954
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	1 cut(s)	928
HpyF10VI	GCNNNNNNNGC	1 cut(s)	911
HpyF3I	CTNAG	3 cut(s)	12, 132, 784
Hsp92II	CATG	5 cut(s)	82, 291, 514, 603, 716
Kzo9I	GATC	2 cut(s)	448, 915
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	2 cut(s)	607, 844
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	3 cut(s)	496, 535, 826
MalI	GATC	2 cut(s)	450, 917
MboI	GATC	2 cut(s)	448, 915
MboII	GAAGA	7 cut(s)	37, 60, 255, 477, 643, 699, 814
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	4 cut(s)	313, 729, 789, 883
MlyI	GAGTC	5 cut(s)	128, 314, 501, 776, 799
MmeI	TCCRAC	1 cut(s)	698
MseI	TTAA	3 cut(s)	237, 570, 669
MspA1I	CMGCKG	2 cut(s)	850, 905
MspI	CCGG	1 cut(s)	655
MspR9I	CCNGG	4 cut(s)	433, 656, 921, 946
MunI	CAATTG	1 cut(s)	313
MvaI	CCWGG	3 cut(s)	433, 921, 946
MwoI	GCNNNNNNNGC	1 cut(s)	911
NciI	CCSGG	1 cut(s)	656
NdeII	GATC	2 cut(s)	448, 915
NlaIII	CATG	5 cut(s)	82, 291, 514, 603, 716
NlaIV	GGNNCC	1 cut(s)	939
NmuCI	GTSAC	1 cut(s)	496
PagI	TCATGA	1 cut(s)	510
PceI	AGGCCT	1 cut(s)	334
PfeI	GAWTC	3 cut(s)	98, 260, 387
PkrI	GCNGC	2 cut(s)	280, 763
PleI	GAGTC	5 cut(s)	127, 313, 501, 776, 799
PpsI	GAGTC	5 cut(s)	127, 313, 501, 776, 799
PshAI	GACNNNNGTC	1 cut(s)	905
Psp6I	CCWGG	3 cut(s)	431, 919, 944
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	3 cut(s)	431, 919, 944
PspN4I	GGNNCC	1 cut(s)	939
PspPI	GGNCC	2 cut(s)	108, 603
PsuI	RGATCY	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	3 cut(s)	46, 58, 463
RsaNI	GTAC	3 cut(s)	45, 57, 462
SaqAI	TTAA	3 cut(s)	237, 570, 669
SatI	GCNGC	2 cut(s)	279, 762
Sau3AI	GATC	2 cut(s)	448, 915
Sau96I	GGNCC	2 cut(s)	108, 603
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	5 cut(s)	128, 314, 501, 776, 799
ScrFI	CCNGG	4 cut(s)	433, 656, 921, 946
SetI	ASST	6 cut(s)	167, 397, 498, 592, 706, 907
SfaNI	GCATC	2 cut(s)	607, 844
SinI	GGWCC	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	4 cut(s)	313, 729, 789, 883
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	4 cut(s)	429, 681, 761, 850
SspMI	CTAG	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	4 cut(s)	431, 654, 919, 944
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	373
TasI	AATT	4 cut(s)	313, 729, 789, 883
TatI	WGTACW	2 cut(s)	44, 461
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	3 cut(s)	98, 260, 387
Tru1I	TTAA	3 cut(s)	237, 570, 669
Tru9I	TTAA	3 cut(s)	237, 570, 669
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	4 cut(s)	233, 252, 363, 815
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	1 cut(s)	883
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.