Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001307

Physical Location & Seq

Genomic Coordinates Reverse (-)

20007313 .. 20009038

Gene Structure 1726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGCGGATCTAAAGAATCTCTTCCTCATCACGAAACATCCATCAACAACACAGATCTTCCTAACGTCTCTCTTCTTCCTTTCTCTCTTCCTCCTCTCCTCTTCTTCTCTCTCAGATTTCTCTCCATCACTCATCGTCTCTAGCTTCACCTCTCGTCTTCTCACAGCAGCAAACTTCTTCTCTTCTCCTTCTTCTTATACTTCCTCTGCTTCAGATACAACTATGTTTCTCTCTTCTGTTTCTCCCAGAAGAATCAACGAGCCAAAGATTGATTCGGAGACCAAAGAACTCGCTTCTTGCGACATTTTTGATGGAACTTGGGTCTTTGACGATTCTGAACCGGTTTATCTTCCTGGTTATTGTCCTTTCGTTGAAGATAAATTCAACTGCTTCAAGAATGGTCGACCTGATTCGGGGTTTCTCCGTCATCGATGGCAACCTCATGGATGCTCGATTCCAAGATTCGATGGGAAGAAGATGTTGAAGATGCTGAGAGGGAAAAGAGTTGTTTTTGTTGGTGATTCATTGAATAGAAACATGTGGGAGTCTCTGGTTTGTTCACTTAGGTCAACATTGGAAGACAAAAACAGAGTTTCTAAGATTATTGGAAAACAGAGTAATCTTCCTAACGAAGGCTTTTACGGTTTCAGGTTCAATGACTTTGAATGCTCTATTGACTTCATCAAATCACCATTCCTCGTTCAAGAATCAGAAGTTGTAGATGTATACGGGAAGAGAAGAGAGACACTGAGACTCGATATGATTCAAAGATCGATGACGAAGATATACAAAAACGCAGACATTGTTATATTTAACACTGGTCACTGGTGGACTCACCAGAAAACCTACGAAGGGAAAGGTTATTACCAGGAAGGAAATAGGGTTTACGAAAGATTAGAAGTGAAAGAAGCTTATACAAAAGCTATTCATACATGGGCTGACTGGGTTGATTCCAATATCAACAGTACTAAAACCAGAGTCTTCTTCGTTGGTTATTCCTCTTCACATTTTAGAAAAGGGGCGTGGAATAGCGGAGGACAATGCGATGGAGAAACAAGACCGATACAGAACGAAACGTACACAGGAGTGTATCCATGGATGATGAAAGTTGTAGAATCTGTGATCTCGGAAATGAAAACGCCTGTGTTTTACATGAACATTACGAAGATGACTTGGTACCGAACAGATGGTCATCCGTCGGTTTACAGACAGCCCGCCGACCCCCGAGGAACTTCTCCTGCAGCGGGAATGTACCAAGATTGTAGTCATTGGTGCTTACCTGGAGTTCCTGATTCATGGAACCAGCTTCTCTACGCTACTCTGCTAGTTTCACATGGTTCCTTGCCTGACAAGTCACTTGGAAGTCTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

457

Amino Acids

52.3

Weight (kDa)

8.56

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	99 - 151	7.6e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	152 - 439	5.4e-102	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49340
fragaria_vesca	FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44460 FvH4_3g44460 FvH4_3g44460
malus_domestica	MD03G1012500.v1.1 MD03G1012600.v1.1 MD03G1013000.v1.1 MD03G1013100.v1.1 MD03G1013400.v1.1 MD03G1013500.v1.1 MD11G1015200.v1.1
prunus_persica	Prupe.6G013100_v2.0.a1 Prupe.6G013300_v2.0.a1
pyrus_communis	pycom02g13780 pycom03g01130
rosa_chinensis	RchiOBHm_Chr5g0081011 RchiOBHm_Chr5g0081071 RchiOBHm_Chr5g0081121 RchiOBHm_Chr5g0081131
rosa_laevigata	RLG00000036911 RLG00000036913
rosa_multiflora	Rmu_sc0006274.1_g000005 Rmu_ssc0000432.1_g000079 Rmu_ssc0000432.1_g000080 Rmu_ssc0000432.1_g000113 Rmu_ssc0000432.1_g000119
rosa_roxburghii	Rroxscaffold_1G00002310 Rroxscaffold_1G00002320 Rroxscaffold_1G00002470
rosa_rugosa	Rorug05G0473500 Rorug05G0473600
rosa_samantha	Rh5AG525800 Rh5AG526000 Rh5AG526100 Rh5BG549700 Rh5BG549900 Rh5BG550300 Rh5BG550400 Rh5CG572600 Rh5CG573200 Rh5CG573300 Rh5DG560000 Rh5DG560100
rosa_wichuraiana	Rw0G002560 Rw0G002570 Rw0G012050 Rw5G048870 Rw5G048880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1176
AccB1I	GGYRCC	1 cut(s)	1176
AccI	GTMKAC	2 cut(s)	403, 726
AciI	CCGC	4 cut(s)	5, 1032, 1215, 1244
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	4 cut(s)	967, 1079, 1178, 1253
AfiI	CCNNNNNNNGG	4 cut(s)	413, 632, 852, 1244
AflIII	ACRYGT	1 cut(s)	537
AgeI	ACCGGT	1 cut(s)	340
AgsI	TTSAA	9 cut(s)	374, 385, 394, 484, 529, 655, 665, 704, 767
AjnI	CCWGG	3 cut(s)	352, 867, 1279
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
AleI	CACNNNNGTG	1 cut(s)	1085
AluBI	AGCT	4 cut(s)	144, 911, 923, 1306
AluI	AGCT	4 cut(s)	144, 911, 923, 1306
Alw26I	GTCTC	7 cut(s)	72, 142, 272, 552, 737, 745, 1370
AlwI	GGATC	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	1224
ApeKI	GCWGC	2 cut(s)	167, 1241
ApoI	RAATTY	1 cut(s)	380
ArsI	GACNNNNNNTTYG	2 cut(s)	1174, 1206
AsiGI	ACCGGT	1 cut(s)	340
Asp700I	GAANNNNTTC	1 cut(s)	20
Asp718I	GGTACC	1 cut(s)	1176
AsuHPI	GGTGA	4 cut(s)	139, 530, 681, 827
AvaI	CYCGRG	1 cut(s)	1224
BanI	GGYRCC	1 cut(s)	1176
BbsI	GAAGAC	3 cut(s)	149, 585, 973
BbvI	GCAGC	2 cut(s)	179, 1253
BccI	CCATC	7 cut(s)	49, 133, 305, 426, 461, 1040, 1181
BciT130I	CCWGG	3 cut(s)	354, 869, 1281
BciVI	GTATCC	1 cut(s)	1101
BcoDI	GTCTC	7 cut(s)	72, 142, 272, 552, 737, 745, 1370
BfaI	CTAG	2 cut(s)	141, 1325
BfmI	CTRYAG	1 cut(s)	1239
BfuI	GTATCC	1 cut(s)	1101
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	2 cut(s)	168, 1242
BlsI	GCNGC	2 cut(s)	169, 1243
BmcAI	AGTACT	1 cut(s)	967
Bme1390I	CCNGG	3 cut(s)	354, 869, 1281
BmeT110I	CYCGRG	1 cut(s)	1224
BmiI	GGNNCC	3 cut(s)	1178, 1301, 1339
BmrFI	CCNGG	3 cut(s)	354, 869, 1281
BmrI	ACTGGG	1 cut(s)	952
BmsI	GCATC	2 cut(s)	437, 477
BmuI	ACTGGG	1 cut(s)	952
BpiI	GAAGAC	3 cut(s)	149, 585, 973
BpmI	CTGGAG	1 cut(s)	1302
Bsa29I	ATCGAT	2 cut(s)	430, 773
BsaBI	GATNNNNATC	1 cut(s)	1191
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	1094, 1225
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	4 cut(s)	413, 632, 852, 1244
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	3 cut(s)	823, 830, 947
Bse8I	GATNNNNATC	1 cut(s)	1191
BseBI	CCWGG	3 cut(s)	354, 869, 1281
BseCI	ATCGAT	2 cut(s)	430, 773
BseDI	CCNNGG	2 cut(s)	1094, 1225
BseGI	GGATG	4 cut(s)	37, 452, 1104, 1192
BseJI	GATNNNNATC	1 cut(s)	1191
BseLI	CCNNNNNNNGG	4 cut(s)	413, 632, 852, 1244
BseMII	CTCAG	3 cut(s)	126, 482, 740
BseNI	ACTGG	3 cut(s)	823, 830, 947
BseRI	GAGGAG	2 cut(s)	83, 88
BseXI	GCAGC	2 cut(s)	179, 1253
BshNI	GGYRCC	1 cut(s)	1176
BshTI	ACCGGT	1 cut(s)	340
BshVI	ATCGAT	2 cut(s)	430, 773
BsiHKCI	CYCGRG	1 cut(s)	1224
BsiSI	CCGG	1 cut(s)	341
BslI	CCNNNNNNNGG	4 cut(s)	413, 632, 852, 1244
BsmAI	GTCTC	7 cut(s)	72, 142, 272, 552, 737, 745, 1370
BsmBI	CGTCTC	2 cut(s)	72, 142
BsmI	GAATGC	1 cut(s)	671
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	1224
Bsp143I	GATC	4 cut(s)	7, 54, 770, 1122
Bsp19I	CCATGG	1 cut(s)	1094
BspACI	CCGC	4 cut(s)	5, 1032, 1215, 1244
BspCNI	CTCAG	3 cut(s)	125, 483, 741
BspDI	ATCGAT	2 cut(s)	430, 773
BspLI	GGNNCC	3 cut(s)	1178, 1301, 1339
BspMAI	CTGCAG	1 cut(s)	1243
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	1176
BspTNI	GGTCTC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	3 cut(s)	823, 830, 947
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	1094, 1225
BssMI	GATC	4 cut(s)	7, 54, 770, 1122
BssNAI	GTATAC	1 cut(s)	727
BssT1I	CCWWGG	1 cut(s)	1094
Bst1107I	GTATAC	1 cut(s)	727
Bst2UI	CCWGG	3 cut(s)	354, 869, 1281
Bst4CI	ACNGT	2 cut(s)	644, 965
Bst6I	CTCTTC	9 cut(s)	26, 77, 92, 106, 187, 238, 728, 733, 1006
BstC8I	GCNNGC	1 cut(s)	1215
BstDEI	CTNAG	5 cut(s)	112, 491, 563, 597, 749
BstDSI	CCRYGG	1 cut(s)	1094
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	4 cut(s)	37, 452, 1104, 1192
BstKTI	GATC	4 cut(s)	10, 57, 773, 1125
BstMAI	GTCTC	7 cut(s)	72, 142, 272, 552, 737, 745, 1370
BstMBI	GATC	4 cut(s)	7, 54, 770, 1122
BstNI	CCWGG	3 cut(s)	354, 869, 1281
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	3 cut(s)	352, 867, 1279
BstSFI	CTRYAG	1 cut(s)	1239
BstV1I	GCAGC	2 cut(s)	179, 1253
BstV2I	GAAGAC	3 cut(s)	149, 585, 973
BstX2I	RGATCY	2 cut(s)	7, 54
BstYI	RGATCY	2 cut(s)	7, 54
BstZ17I	GTATAC	1 cut(s)	727
Bsu15I	ATCGAT	2 cut(s)	430, 773
BsuI	GTATCC	1 cut(s)	1101
BsuTUI	ATCGAT	2 cut(s)	430, 773
BtgI	CCRYGG	1 cut(s)	1094
BtgZI	GCGATG	1 cut(s)	1059
BtsCI	GGATG	4 cut(s)	37, 452, 1104, 1192
BtsIMutI	CAGTG	3 cut(s)	746, 816, 823
Cac8I	GCNNGC	1 cut(s)	1215
Cfr10I	RCCGGY	1 cut(s)	340
ClaI	ATCGAT	2 cut(s)	430, 773
Csp6I	GTAC	4 cut(s)	966, 1078, 1177, 1252
CspAI	ACCGGT	1 cut(s)	340
CviAII	CATG	7 cut(s)	443, 538, 933, 1095, 1153, 1296, 1334
CviJI	RGCY	8 cut(s)	144, 262, 636, 911, 923, 938, 1213, 1306
CviKI_1	RGCY	8 cut(s)	144, 262, 636, 911, 923, 938, 1213, 1306
CviQI	GTAC	4 cut(s)	966, 1078, 1177, 1252
DdeI	CTNAG	5 cut(s)	112, 491, 563, 597, 749
DpnI	GATC	4 cut(s)	9, 56, 772, 1124
DpnII	GATC	4 cut(s)	7, 54, 770, 1122
Eam1104I	CTCTTC	9 cut(s)	26, 77, 92, 106, 187, 238, 728, 733, 1006
EarI	CTCTTC	9 cut(s)	26, 77, 92, 106, 187, 238, 728, 733, 1006
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	1094
Eco31I	GGTCTC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	1224
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoRII	CCWGG	3 cut(s)	352, 867, 1279
EcoT14I	CCWWGG	1 cut(s)	1094
ErhI	CCWWGG	1 cut(s)	1094
Esp3I	CGTCTC	2 cut(s)	72, 142
FaeI	CATG	7 cut(s)	446, 541, 936, 1098, 1156, 1299, 1337
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	7 cut(s)	442, 537, 932, 1094, 1152, 1295, 1333
FauI	CCCGC	2 cut(s)	1222, 1237
FblI	GTMKAC	2 cut(s)	403, 726
Fnu4HI	GCNGC	2 cut(s)	168, 1242
FokI	GGATG	4 cut(s)	24, 459, 1111, 1179
Fsp4HI	GCNGC	2 cut(s)	168, 1242
FspBI	CTAG	2 cut(s)	141, 1325
GluI	GCNGC	2 cut(s)	168, 1242
GsuI	CTGGAG	1 cut(s)	1302
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	7 cut(s)	446, 541, 936, 1098, 1156, 1299, 1337
HincII	GTYRAC	2 cut(s)	404, 570
HindII	GTYRAC	2 cut(s)	404, 570
HindIII	AAGCTT	1 cut(s)	909
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	4 cut(s)	139, 530, 681, 827
Hpy166II	GTNNAC	8 cut(s)	404, 560, 570, 727, 831, 886, 1080, 1204
Hpy188I	TCNGA	6 cut(s)	115, 214, 277, 337, 712, 1129
Hpy188III	TCNNGA	4 cut(s)	31, 394, 704, 1289
Hpy8I	GTNNAC	8 cut(s)	404, 560, 570, 727, 831, 886, 1080, 1204
Hpy99I	CGWCG	1 cut(s)	1201
HpyAV	CCTTC	4 cut(s)	198, 626, 845, 866
HpyCH4III	ACNGT	2 cut(s)	644, 965
HpyCH4IV	ACGT	2 cut(s)	65, 1076
HpyCH4V	TGCA	1 cut(s)	1241
HpyF3I	CTNAG	5 cut(s)	112, 491, 563, 597, 749
HpySE526I	ACGT	2 cut(s)	65, 1076
Hsp92II	CATG	7 cut(s)	446, 541, 936, 1098, 1156, 1299, 1337
KpnI	GGTACC	1 cut(s)	1180
Kzo9I	GATC	4 cut(s)	7, 54, 770, 1122
Lsp1109I	GCAGC	2 cut(s)	179, 1253
LweI	GCATC	2 cut(s)	437, 477
MaeI	CTAG	2 cut(s)	141, 1325
MaeII	ACGT	2 cut(s)	65, 1076
MaeIII	GTNAC	2 cut(s)	821, 1353
MalI	GATC	4 cut(s)	9, 56, 772, 1124
MboI	GATC	4 cut(s)	7, 54, 770, 1122
MflI	RGATCY	2 cut(s)	7, 54
MluCI	AATT	1 cut(s)	380
MlyI	GAGTC	4 cut(s)	554, 747, 826, 987
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	813
MslI	CAYNNNNRTG	1 cut(s)	1085
MspA1I	CMGCKG	1 cut(s)	1244
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	3 cut(s)	354, 869, 1281
Mva1269I	GAATGC	1 cut(s)	671
MvaI	CCWGG	3 cut(s)	354, 869, 1281
NcoI	CCATGG	1 cut(s)	1094
NdeII	GATC	4 cut(s)	7, 54, 770, 1122
NlaIII	CATG	7 cut(s)	446, 541, 936, 1098, 1156, 1299, 1337
NlaIV	GGNNCC	3 cut(s)	1178, 1301, 1339
NmuCI	GTSAC	2 cut(s)	821, 1353
NspI	RCATGY	1 cut(s)	541
OliI	CACNNNNGTG	1 cut(s)	1085
PciI	ACATGT	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PctI	GAATGC	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	20
PinAI	ACCGGT	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	169, 1243
PleI	GAGTC	4 cut(s)	553, 747, 826, 986
PpsI	GAGTC	4 cut(s)	553, 747, 826, 986
PscI	ACATGT	1 cut(s)	537
Psp6I	CCWGG	3 cut(s)	352, 867, 1279
PspGI	CCWGG	3 cut(s)	352, 867, 1279
PspN4I	GGNNCC	3 cut(s)	1178, 1301, 1339
PsrI	GAACNNNNNNTAC	2 cut(s)	1061, 1093
PstI	CTGCAG	1 cut(s)	1243
PsuI	RGATCY	2 cut(s)	7, 54
RsaI	GTAC	4 cut(s)	967, 1079, 1178, 1253
RsaNI	GTAC	4 cut(s)	966, 1078, 1177, 1252
RseI	CAYNNNNRTG	1 cut(s)	1085
SalI	GTCGAC	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	813
SatI	GCNGC	2 cut(s)	168, 1242
Sau3AI	GATC	4 cut(s)	7, 54, 770, 1122
ScaI	AGTACT	1 cut(s)	967
SchI	GAGTC	4 cut(s)	554, 747, 826, 987
ScrFI	CCNGG	3 cut(s)	354, 869, 1281
SfaNI	GCATC	2 cut(s)	437, 477
SfcI	CTRYAG	1 cut(s)	1239
SmiMI	CAYNNNNRTG	1 cut(s)	1085
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	4 cut(s)	5, 1032, 1215, 1244
SspMI	CTAG	2 cut(s)	141, 1325
StyD4I	CCNGG	3 cut(s)	352, 867, 1279
StyI	CCWWGG	1 cut(s)	1094
TaaI	ACNGT	2 cut(s)	644, 965
TaiI	ACGT	2 cut(s)	68, 1079
TaqI	TCGA	6 cut(s)	403, 430, 452, 465, 756, 773
TaqII	GACCGA	1 cut(s)	1075
TasI	AATT	1 cut(s)	380
TatI	WGTACW	1 cut(s)	965
Tru1I	TTAA	1 cut(s)	813
Tru9I	TTAA	1 cut(s)	813
TscAI	CASTG	3 cut(s)	753, 823, 830
TseFI	GTSAC	2 cut(s)	821, 1353
TseI	GCWGC	2 cut(s)	167, 1241
Tsp45I	GTSAC	2 cut(s)	821, 1353
TspDTI	ATGAA	7 cut(s)	513, 670, 917, 1118, 1148, 1169, 1284
TspGWI	ACGGA	2 cut(s)	413, 1185
TspRI	CASTG	3 cut(s)	753, 823, 830
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	541
XmiI	GTMKAC	2 cut(s)	403, 726
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	2 cut(s)	141, 1325
ZrmI	AGTACT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.