RchiOBHm_Chr5g0081121

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001307
Physical Location & Seq
Reverse (-)
87158385 .. 87161287
2903 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35538

Sequence Viewer

Length: 1578 bp
ATGGCAGATTCCTCACCCCAAACTACAAAGCACCACTCACCCACTAAAGCAGAGCCCAAGGCTTCTCTTTCTTCCATCTTCTTCACTTCAAGAAAAGCCTCCGCCTTTGCTTATGGAATCGCCTTTGCTCTCATTGCCTTCACTTCCTTCTGGGTTTTCAACCCATCTGGCTACTCTTTCCCTTTTAGCTTCAACACCATCTTCTACTCTTCTCCTTCCAACTCTTCTCAGGAAGTTACTAAATCCCCAAAGATCGAATCTTTACCACATTTGGGCAGCAATGGAAGTTTGAACAGTGAAATGGGTGCTTCTCAGTTTTCCGGGAAGATGGGAAATCAGAGCAGTACTCAAATGGGTACTGATCAATCTTCAAAACCCGTGATTTCTTTGCCCCAAGAATCCAATCACACCAGAAATGAGTCTTCTTTTTCTGAAGGTTCTAGTGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGGTTGTCTGGGTTTGAGTTGATTAATGGTTGTGATTTGTTTGATGGAAGATGGGTGAGAGATGATTCATACCCACTTTATGCTGCTGGGTCTTGTCCTTACATTGATGAATCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGTTATGAAAAGTATAGATGGCAACCCAAAAACTGCAATCTCCCAAGGATGAATGGAAGGAACATGTTGGAATTATTGAGAGGAAAGCGTCTAGTTTTTGTTGGTGATTCTCTCAACAGGAATATGTGGGAGTCTTTGGTTTGTCTTCTTAGGAATTCAGTGGATGATAAGAGCAGAGTTTTTGAAGCTTCTGGCAGGAGCGAATTTCGTACAGAGGGCGCCTATTTTTTTGTATTCAAGGATTACAATTGTTCACTGGAGTTTGTTCAATCACCATTTCTAGTTCAAGAATCGGAGGTGCTAACCACAAATGGGTCAAAGAAGGAAACACTGCGCCTGGATATGATTCAGAGATCCTTGGATAAGTACAAAAGTGCAGATGTTCTCGTCTTCAACACAGGTCACTGGTGGACTCATGATAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGAATATATCTATAGTCAATTGAATGTCAAAGAGGCGTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTGTTGTTTTCTTCCGGGGCTATTCGCCCAATCACTTTAGTGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAGTTCAATACGAGGCATACAAAGGAAAATATCCTGCAAAGATGAGAATACTGGACTCAGTAATCAGGGAAATGAAGATTCCAATCTTTTATCTGAATGTTACAAAAATGACTGATTTTCGGAGGGATGCTCACCCATCCATTTACAGAAAGCAGAATTTGACAGAGGAGGAGAGACAGTTGTCTTTGAGATCCCAGGATTGCAGTCATTGGTGCCTCCCTGGTGTTCCTGATACATGGAACGAGCTTCTATATGCTCATCTCCTTACATATACCCTGCAGCGGAGGAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

525

Amino Acids

59.81

Weight (kDa)

8.65

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 175 - 227 1.1e-22 PMR5 N terminal Domain
PC-Esterase PF13839 228 - 513 2.1e-101 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 860, 1494
AciI CCGC 2 cut(s) 102, 1564
AclWI GGATC 2 cut(s) 990, 1467
AcsI RAATTY 3 cut(s) 796, 845, 1438
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 4 cut(s) 346, 358, 853, 1010
AfiI CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1563
AflIII ACRYGT 1 cut(s) 705
AjnI CCWGG 3 cut(s) 978, 1476, 1501
AleI CACNNNNGTG 1 cut(s) 1233
AluBI AGCT 5 cut(s) 189, 465, 830, 1145, 1528
AluI AGCT 5 cut(s) 189, 465, 830, 1145, 1528
Alw26I GTCTC 2 cut(s) 1450, 1564
AlwI GGATC 2 cut(s) 990, 1467
AoxI GGCC 2 cut(s) 632, 1158
ApeKI GCWGC 3 cut(s) 276, 578, 1561
ApoI RAATTY 3 cut(s) 796, 845, 1438
AseI ATTAAT 1 cut(s) 519
AspLEI GCGC 2 cut(s) 863, 978
AspS9I GGNCC 1 cut(s) 1158
AsuC2I CCSGG 2 cut(s) 322, 1211
AsuHPI GGTGA 7 cut(s) 6, 30, 562, 758, 906, 1109, 1406
BanI GGYRCC 2 cut(s) 860, 1494
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 1234, 1266
BbsI GAAGAC 3 cut(s) 414, 779, 1024
BbvI GCAGC 3 cut(s) 288, 565, 1573
BciT130I CCWGG 3 cut(s) 980, 1478, 1503
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 2 cut(s) 322, 1211
BcoDI GTCTC 2 cut(s) 1450, 1564
BfaI CTAG 3 cut(s) 441, 734, 923
BfmI CTRYAG 2 cut(s) 1108, 1559
BfoI RGCGCY 1 cut(s) 864
BisI GCNGC 3 cut(s) 277, 579, 1562
BlsI GCNGC 3 cut(s) 278, 580, 1563
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 5 cut(s) 322, 980, 1211, 1478, 1503
BmgT120I GGNCC 1 cut(s) 1158
BmiI GGNNCC 2 cut(s) 862, 1496
BmrFI CCNGG 5 cut(s) 322, 980, 1211, 1478, 1503
BmsI GCATC 2 cut(s) 1162, 1399
BoxI GACNNNNGTC 1 cut(s) 1462
BpiI GAAGAC 3 cut(s) 414, 779, 1024
BplI GAGNNNNNCTC 4 cut(s) 331, 363, 1396, 1428
BpmI CTGGAG 2 cut(s) 920, 1275
BpuMI CCSGG 2 cut(s) 322, 1211
BsaBI GATNNNNATC 1 cut(s) 1364
BsaHI GRCGYC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 1564
BsaJI CCNNGG 6 cut(s) 57, 686, 999, 1210, 1476, 1501
BsaXI ACNNNNNCTCC 2 cut(s) 1445, 1475
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1563
Bse1I ACTGG 5 cut(s) 903, 1052, 1258, 1283, 1338
Bse3DI GCAATG 3 cut(s) 132, 286, 496
Bse8I GATNNNNATC 1 cut(s) 1364
BseBI CCWGG 3 cut(s) 980, 1478, 1503
BseDI CCNNGG 6 cut(s) 57, 686, 999, 1210, 1476, 1501
BseGI GGATG 5 cut(s) 696, 811, 1177, 1414, 1418
BseJI GATNNNNATC 1 cut(s) 1364
BseLI CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1563
BseMI GCAATG 3 cut(s) 132, 286, 496
BseMII CTCAG 3 cut(s) 242, 326, 1353
BseNI ACTGG 5 cut(s) 903, 1052, 1258, 1283, 1338
BseRI GAGGAG 2 cut(s) 1463, 1466
BseXI GCAGC 3 cut(s) 288, 565, 1573
BseYI CCCAGC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 1038
BshFI GGCC 2 cut(s) 634, 1160
BshNI GGYRCC 2 cut(s) 860, 1494
BsiSI CCGG 2 cut(s) 321, 1210
BslI CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1563
BsmAI GTCTC 2 cut(s) 1450, 1564
BsnI GGCC 2 cut(s) 634, 1160
Bso31I GGTCTC 1 cut(s) 1564
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 252, 361, 995, 1472
BspACI CCGC 2 cut(s) 102, 1564
BspANI GGCC 2 cut(s) 634, 1160
BspCNI CTCAG 3 cut(s) 241, 325, 1352
BspHI TCATGA 1 cut(s) 1057
BspLI GGNNCC 2 cut(s) 862, 1496
BspMAI CTGCAG 1 cut(s) 1563
BspPI GGATC 2 cut(s) 990, 1467
BspT107I GGYRCC 2 cut(s) 860, 1494
BspTNI GGTCTC 1 cut(s) 1564
BsrDI GCAATG 3 cut(s) 132, 286, 496
BsrI ACTGG 5 cut(s) 903, 1052, 1258, 1283, 1338
BssECI CCNNGG 6 cut(s) 57, 686, 999, 1210, 1476, 1501
BssMI GATC 4 cut(s) 252, 361, 995, 1472
BssNI GRCGYC 1 cut(s) 861
BssT1I CCWWGG 3 cut(s) 57, 686, 999
Bst2UI CCWGG 3 cut(s) 980, 1478, 1503
Bst4CI ACNGT 3 cut(s) 296, 1198, 1461
Bst6I CTCTTC 2 cut(s) 214, 229
BstACI GRCGYC 1 cut(s) 861
BstDEI CTNAG 4 cut(s) 228, 312, 791, 1339
BstF5I GGATG 5 cut(s) 696, 811, 1177, 1414, 1418
BstH2I RGCGCY 1 cut(s) 864
BstHHI GCGC 2 cut(s) 863, 978
BstKTI GATC 4 cut(s) 255, 364, 998, 1475
BstMAI GTCTC 2 cut(s) 1450, 1564
BstMBI GATC 4 cut(s) 252, 361, 995, 1472
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 3 cut(s) 980, 1478, 1503
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 1462
BstSCI CCNGG 5 cut(s) 320, 978, 1209, 1476, 1501
BstSFI CTRYAG 2 cut(s) 1108, 1559
BstV1I GCAGC 3 cut(s) 288, 565, 1573
BstV2I GAAGAC 3 cut(s) 414, 779, 1024
BstX2I RGATCY 2 cut(s) 995, 1472
BstXI CCANNNNNNTGG 1 cut(s) 1168
BstYI RGATCY 2 cut(s) 995, 1472
BsuRI GGCC 2 cut(s) 634, 1160
BtsCI GGATG 5 cut(s) 696, 811, 1177, 1414, 1418
BtsI GCAGTG 1 cut(s) 971
BtsIMutI CAGTG 5 cut(s) 301, 807, 896, 971, 1045
CciI TCATGA 1 cut(s) 1057
CfoI GCGC 2 cut(s) 863, 978
Cfr13I GGNCC 1 cut(s) 1158
CseI GACGC 1 cut(s) 719
Csp6I GTAC 4 cut(s) 345, 357, 852, 1009
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 5 cut(s) 706, 1058, 1155, 1268, 1518
CviQI GTAC 4 cut(s) 345, 357, 852, 1009
DdeI CTNAG 4 cut(s) 228, 312, 791, 1339
DinI GGCGCC 1 cut(s) 862
DpnI GATC 4 cut(s) 254, 363, 997, 1474
DpnII GATC 4 cut(s) 252, 361, 995, 1472
Eam1104I CTCTTC 2 cut(s) 214, 229
EarI CTCTTC 2 cut(s) 214, 229
EciI GGCGGA 1 cut(s) 91
Eco130I CCWWGG 3 cut(s) 57, 686, 999
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 1564
Eco57I CTGAAG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 3 cut(s) 978, 1476, 1501
EcoT14I CCWWGG 3 cut(s) 57, 686, 999
EcoT38I GRGCYC 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 862
EheI GGCGCC 1 cut(s) 862
ErhI CCWWGG 3 cut(s) 57, 686, 999
FaeI CATG 5 cut(s) 709, 1061, 1158, 1271, 1521
FatI CATG 5 cut(s) 705, 1057, 1154, 1267, 1517
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 277, 579, 1562
FokI GGATG 5 cut(s) 703, 818, 1184, 1405, 1421
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 277, 579, 1562
FspBI CTAG 3 cut(s) 441, 734, 923
GlaI GCGC 2 cut(s) 862, 977
GluI GCNGC 3 cut(s) 277, 579, 1562
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 2 cut(s) 920, 1275
HaeII RGCGCY 1 cut(s) 864
HaeIII GGCC 2 cut(s) 634, 1160
HapII CCGG 2 cut(s) 321, 1210
HgaI GACGC 1 cut(s) 719
HhaI GCGC 2 cut(s) 863, 978
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 5 cut(s) 709, 1061, 1158, 1271, 1521
Hin6I GCGC 2 cut(s) 861, 976
HinP1I GCGC 2 cut(s) 861, 976
HindIII AAGCTT 1 cut(s) 828
HpaII CCGG 2 cut(s) 321, 1210
HphI GGTGA 7 cut(s) 6, 30, 562, 758, 906, 1109, 1406
Hpy166II GTNNAC 2 cut(s) 896, 1053
Hpy188I TCNGA 7 cut(s) 339, 433, 937, 993, 1275, 1377, 1404
Hpy188III TCNNGA 8 cut(s) 90, 230, 929, 1058, 1071, 1091, 1187, 1511
Hpy8I GTNNAC 2 cut(s) 896, 1053
HpyAV CCTTC 6 cut(s) 148, 157, 225, 428, 693, 958
HpyCH4III ACNGT 3 cut(s) 296, 1198, 1461
HpyCH4V TGCA 5 cut(s) 678, 1019, 1319, 1485, 1561
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 4 cut(s) 228, 312, 791, 1339
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 5 cut(s) 709, 1061, 1158, 1271, 1521
HspAI GCGC 2 cut(s) 861, 976
KasI GGCGCC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 4 cut(s) 252, 361, 995, 1472
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 3 cut(s) 288, 565, 1573
LweI GCATC 2 cut(s) 1162, 1399
MaeI CTAG 3 cut(s) 441, 734, 923
MaeIII GTNAC 4 cut(s) 235, 1043, 1082, 1381
MalI GATC 4 cut(s) 254, 363, 997, 1474
MboI GATC 4 cut(s) 252, 361, 995, 1472
MfeI CAATTG 3 cut(s) 613, 889, 1115
MflI RGATCY 2 cut(s) 995, 1472
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 7 cut(s) 613, 713, 796, 845, 889, 1115, 1438
Mly113I GGCGCC 1 cut(s) 861
MlyI GAGTC 4 cut(s) 428, 782, 1048, 1331
MmeI TCCRAC 3 cut(s) 243, 690, 1253
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 1233
MspA1I CMGCKG 1 cut(s) 1564
MspI CCGG 2 cut(s) 321, 1210
MspR9I CCNGG 5 cut(s) 322, 980, 1211, 1478, 1503
MunI CAATTG 3 cut(s) 613, 889, 1115
MvaI CCWGG 3 cut(s) 980, 1478, 1503
MwoI GCNNNNNNNGC 1 cut(s) 134
NarI GGCGCC 1 cut(s) 861
NciI CCSGG 2 cut(s) 322, 1211
NdeII GATC 4 cut(s) 252, 361, 995, 1472
NlaIII CATG 5 cut(s) 709, 1061, 1158, 1271, 1521
NlaIV GGNNCC 2 cut(s) 862, 1496
NmuCI GTSAC 1 cut(s) 1043
NspI RCATGY 1 cut(s) 709
OliI CACNNNNGTG 1 cut(s) 1233
PagI TCATGA 1 cut(s) 1057
PceI AGGCCT 1 cut(s) 634
PciI ACATGT 1 cut(s) 705
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 3 cut(s) 278, 580, 1563
PleI GAGTC 4 cut(s) 427, 781, 1048, 1331
PluTI GGCGCC 1 cut(s) 864
PpsI GAGTC 4 cut(s) 427, 781, 1048, 1331
PscI ACATGT 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 1462
PshBI ATTAAT 1 cut(s) 519
Psp6I CCWGG 3 cut(s) 978, 1476, 1501
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 3 cut(s) 978, 1476, 1501
PspN4I GGNNCC 2 cut(s) 862, 1496
PspPI GGNCC 1 cut(s) 1158
PstI CTGCAG 1 cut(s) 1563
PsuI RGATCY 2 cut(s) 995, 1472
RsaI GTAC 4 cut(s) 346, 358, 853, 1010
RsaNI GTAC 4 cut(s) 345, 357, 852, 1009
RseI CAYNNNNRTG 1 cut(s) 1233
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 3 cut(s) 277, 579, 1562
Sau3AI GATC 4 cut(s) 252, 361, 995, 1472
Sau96I GGNCC 1 cut(s) 1158
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 4 cut(s) 428, 782, 1048, 1331
ScrFI CCNGG 5 cut(s) 322, 980, 1211, 1478, 1503
SduI GDGCHC 1 cut(s) 57
SetI ASST 9 cut(s) 191, 439, 467, 832, 942, 1045, 1147, 1261, 1530
SfaNI GCATC 2 cut(s) 1162, 1399
SfcI CTRYAG 2 cut(s) 1108, 1559
SfoI GGCGCC 1 cut(s) 862
SmiMI CAYNNNNRTG 1 cut(s) 1233
Sse9I AATT 7 cut(s) 613, 713, 796, 845, 889, 1115, 1438
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 2 cut(s) 102, 1564
SspDI GGCGCC 1 cut(s) 860
SspMI CTAG 3 cut(s) 441, 734, 923
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 5 cut(s) 320, 978, 1209, 1476, 1501
StyI CCWWGG 3 cut(s) 57, 686, 999
TaaI ACNGT 3 cut(s) 296, 1198, 1461
TaqI TCGA 1 cut(s) 255
TasI AATT 7 cut(s) 613, 713, 796, 845, 889, 1115, 1438
TatI WGTACW 2 cut(s) 344, 1008
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 5 cut(s) 301, 807, 903, 978, 1052
TseFI GTSAC 1 cut(s) 1043
TseI GCWGC 3 cut(s) 276, 578, 1561
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 5 cut(s) 552, 618, 663, 707, 1370
TspRI CASTG 5 cut(s) 301, 807, 903, 978, 1052
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 3 cut(s) 796, 845, 1438
XceI RCATGY 1 cut(s) 709
XspI CTAG 3 cut(s) 441, 734, 923
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.