Rw0G012050

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00536
OG0001307
Physical Location & Seq
Reverse (-)
8586 .. 10908
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G012050.1

Sequence Viewer

Length: 1293 bp
ATGAGTGCTTCTCAGTTTTCCGGGAAGATGGGAAATCAGAGCAGTACTCAATTGGGTGCTGATCAATCTTCAAAACCCATGATTTCTTTGCCCCAAGAATCCAATCACACCAGAAATGAGTCTTCTTTTTCTGAAGGTTCTAGTGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAACCAATGAGGGGTTGTCTGGGTTTGAGTTGATTAATGGTTGTGATTTGTTTGATGGAAGATGGGTGAGAGATGATTCATACCCACTTTATGCTGCTGGGTCTTGTCCTTACATTGATGAATCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGTTATGAAAAGTATAGATGGCAACCCAAAAACTGCAATCTCCCAAGGATGAATGGAAGGAACATGTTGGAATTATTGAGAGGAAAGCGTCTAGTTTTTGTTGGTGATTCTCTCAACAGGAATATGTGGGAGTCTTTGGTTTGTCTTCTTAGGAATTCAGTGGATGATAAGAGCAGAGTTTTTGAAGCTTCTGGCAGGAGCGAATTTCGTACAGAGGGCACCTACTTTTTGTATTCAAGGCATGATTACAATTGTTCAGTGGAGTTTGTTCAATCACCATTTCTAGTTCAAGAATCGGAGGTGCTAACCACAAATGGGTCAAAGAAGGAAACACTGCGCCTGGATATGATTCAGAGATCCTTGGATAAGTACAAAAGTGCAGATGTTCTCGTCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGACTATATCTATAGTCAATTGAATGTCAAAGAGGCGTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTGTTGGTTTACAACTATACAGCATCTTCATGTTTGCTTTACCATTTCTTAGTGGTGGAAGATGGAATACTGGATTTCAATGTCATGGTCAGACAGAGCCAATTCAATATGAGGCATACAAAGGAAAATATCCTGCAAAGATGAGAATACTGGACTCAGTAATCAGGGAAATGAAGATTCCAATCTTTTATCTGAATGTTACAAAAATGACAGATTTTCGGAGGGATGCTCACCCATCCATTTACAGAAAGCAGAATTTGACAGAGGAGGAGAGACAGTTGTCTTTGAGATCCCAGGATTGCAATCATTGGTGCCTTCCTGGTGTTCCTGATACATGGAACGAGCTTCTATATGCTCATCTCCTTACATATACCCAGCAGCGGAGGAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

430

Amino Acids

49.68

Weight (kDa)

7.97

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 75 - 127 8.1e-23 PMR5 N terminal Domain
PC-Esterase PF13839 128 - 418 1.7e-88 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 560, 1209
AciI CCGC 1 cut(s) 1279
AclWI GGATC 2 cut(s) 693, 1182
AcsI RAATTY 3 cut(s) 496, 545, 1153
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 3 cut(s) 46, 553, 713
AfiI CCNNNNNNNGG 4 cut(s) 195, 341, 657, 1278
AflIII ACRYGT 1 cut(s) 405
AjnI CCWGG 3 cut(s) 681, 1191, 1216
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AluBI AGCT 4 cut(s) 165, 530, 848, 1243
AluI AGCT 4 cut(s) 165, 530, 848, 1243
Alw26I GTCTC 2 cut(s) 1165, 1279
AlwI GGATC 2 cut(s) 693, 1182
AoxI GGCC 2 cut(s) 332, 861
ApeKI GCWGC 2 cut(s) 278, 1276
ApoI RAATTY 3 cut(s) 496, 545, 1153
AseI ATTAAT 1 cut(s) 219
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 1 cut(s) 861
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 5 cut(s) 262, 458, 609, 812, 1121
BaeGI GKGCMC 1 cut(s) 563
BanI GGYRCC 2 cut(s) 560, 1209
BarI GAAGNNNNNNTAC 2 cut(s) 949, 981
BbsI GAAGAC 3 cut(s) 114, 479, 727
BbvI GCAGC 2 cut(s) 265, 1288
BccI CCATC 7 cut(s) 22, 233, 240, 354, 861, 954, 1141
BciT130I CCWGG 3 cut(s) 683, 1193, 1218
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 1165, 1279
BfaI CTAG 3 cut(s) 141, 434, 626
BfmI CTRYAG 1 cut(s) 811
BisI GCNGC 2 cut(s) 279, 1277
BlsI GCNGC 2 cut(s) 280, 1278
BmcAI AGTACT 1 cut(s) 46
Bme1390I CCNGG 4 cut(s) 22, 683, 1193, 1218
BmgT120I GGNCC 1 cut(s) 861
BmiI GGNNCC 2 cut(s) 562, 1211
BmrFI CCNGG 4 cut(s) 22, 683, 1193, 1218
BmsI GCATC 3 cut(s) 865, 930, 1114
BoxI GACNNNNGTC 1 cut(s) 1177
BpiI GAAGAC 3 cut(s) 114, 479, 727
BplI GAGNNNNNCTC 5 cut(s) 27, 31, 63, 1111, 1143
BpuMI CCSGG 1 cut(s) 22
BsaBI GATNNNNATC 2 cut(s) 1079, 1200
BsaI GGTCTC 1 cut(s) 1279
BsaJI CCNNGG 3 cut(s) 386, 702, 1191
BsaXI ACNNNNNCTCC 2 cut(s) 1160, 1190
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 341, 657, 1278
Bse1I ACTGG 3 cut(s) 755, 973, 1053
Bse8I GATNNNNATC 2 cut(s) 1079, 1200
BseBI CCWGG 3 cut(s) 683, 1193, 1218
BseDI CCNNGG 3 cut(s) 386, 702, 1191
BseGI GGATG 5 cut(s) 396, 511, 880, 1129, 1133
BseJI GATNNNNATC 2 cut(s) 1079, 1200
BseLI CCNNNNNNNGG 4 cut(s) 195, 341, 657, 1278
BseMII CTCAG 2 cut(s) 26, 1068
BseNI ACTGG 3 cut(s) 755, 973, 1053
BseRI GAGGAG 2 cut(s) 1178, 1181
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 2 cut(s) 265, 1288
BseYI CCCAGC 2 cut(s) 281, 1272
BsgI GTGCAG 1 cut(s) 741
BshFI GGCC 2 cut(s) 334, 863
BshNI GGYRCC 2 cut(s) 560, 1209
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 4 cut(s) 195, 341, 657, 1278
BsmAI GTCTC 2 cut(s) 1165, 1279
BsnI GGCC 2 cut(s) 334, 863
Bso31I GGTCTC 1 cut(s) 1279
Bsp1286I GDGCHC 1 cut(s) 563
Bsp143I GATC 3 cut(s) 61, 698, 1187
BspACI CCGC 1 cut(s) 1279
BspANI GGCC 2 cut(s) 334, 863
BspCNI CTCAG 2 cut(s) 25, 1067
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 2 cut(s) 562, 1211
BspPI GGATC 2 cut(s) 693, 1182
BspT107I GGYRCC 2 cut(s) 560, 1209
BspTNI GGTCTC 1 cut(s) 1279
BsrI ACTGG 3 cut(s) 755, 973, 1053
BssECI CCNNGG 3 cut(s) 386, 702, 1191
BssMI GATC 3 cut(s) 61, 698, 1187
BssT1I CCWWGG 2 cut(s) 386, 702
Bst2UI CCWGG 3 cut(s) 683, 1193, 1218
Bst4CI ACNGT 2 cut(s) 901, 1176
BstDEI CTNAG 4 cut(s) 12, 491, 947, 1054
BstF5I GGATG 5 cut(s) 396, 511, 880, 1129, 1133
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 3 cut(s) 64, 701, 1190
BstMAI GTCTC 2 cut(s) 1165, 1279
BstMBI GATC 3 cut(s) 61, 698, 1187
BstNI CCWGG 3 cut(s) 683, 1193, 1218
BstNSI RCATGY 1 cut(s) 409
BstPAI GACNNNNGTC 1 cut(s) 1177
BstSCI CCNGG 4 cut(s) 20, 681, 1191, 1216
BstSFI CTRYAG 1 cut(s) 811
BstSLI GKGCMC 1 cut(s) 563
BstV1I GCAGC 2 cut(s) 265, 1288
BstV2I GAAGAC 3 cut(s) 114, 479, 727
BstX2I RGATCY 2 cut(s) 698, 1187
BstXI CCANNNNNNTGG 1 cut(s) 871
BstYI RGATCY 2 cut(s) 698, 1187
BsuRI GGCC 2 cut(s) 334, 863
BtsCI GGATG 5 cut(s) 396, 511, 880, 1129, 1133
BtsI GCAGTG 1 cut(s) 674
BtsIMutI CAGTG 4 cut(s) 507, 606, 674, 748
CciI TCATGA 1 cut(s) 760
CfoI GCGC 1 cut(s) 681
Cfr13I GGNCC 1 cut(s) 861
CseI GACGC 1 cut(s) 419
Csp6I GTAC 3 cut(s) 45, 552, 712
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviAII CATG 8 cut(s) 79, 406, 584, 761, 858, 928, 983, 1233
CviJI RGCY 8 cut(s) 165, 334, 530, 848, 863, 871, 997, 1243
CviKI_1 RGCY 8 cut(s) 165, 334, 530, 848, 863, 871, 997, 1243
CviQI GTAC 3 cut(s) 45, 552, 712
DdeI CTNAG 4 cut(s) 12, 491, 947, 1054
DpnI GATC 3 cut(s) 63, 700, 1189
DpnII GATC 3 cut(s) 61, 698, 1187
Eco130I CCWWGG 2 cut(s) 386, 702
Eco147I AGGCCT 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 1279
Eco57I CTGAAG 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 3 cut(s) 681, 1191, 1216
EcoT14I CCWWGG 2 cut(s) 386, 702
ErhI CCWWGG 2 cut(s) 386, 702
FaeI CATG 8 cut(s) 82, 409, 587, 764, 861, 931, 986, 1236
FatI CATG 8 cut(s) 78, 405, 583, 760, 857, 927, 982, 1232
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 279, 1277
FokI GGATG 5 cut(s) 403, 518, 887, 1120, 1136
Fsp4HI GCNGC 2 cut(s) 279, 1277
FspBI CTAG 3 cut(s) 141, 434, 626
GlaI GCGC 1 cut(s) 680
GluI GCNGC 2 cut(s) 279, 1277
GsaI CCCAGC 2 cut(s) 285, 1276
HaeIII GGCC 2 cut(s) 334, 863
HapII CCGG 1 cut(s) 21
HgaI GACGC 1 cut(s) 419
HhaI GCGC 1 cut(s) 681
Hin1II CATG 8 cut(s) 82, 409, 587, 764, 861, 931, 986, 1236
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HindIII AAGCTT 1 cut(s) 528
HpaII CCGG 1 cut(s) 21
HphI GGTGA 5 cut(s) 262, 458, 609, 812, 1121
Hpy166II GTNNAC 2 cut(s) 756, 908
Hpy188I TCNGA 7 cut(s) 39, 133, 640, 696, 990, 1092, 1119
Hpy188III TCNNGA 6 cut(s) 632, 761, 774, 794, 890, 1226
Hpy8I GTNNAC 2 cut(s) 756, 908
HpyAV CCTTC 4 cut(s) 128, 393, 661, 1223
HpyCH4III ACNGT 2 cut(s) 901, 1176
HpyCH4V TGCA 4 cut(s) 378, 722, 1034, 1200
HpyF3I CTNAG 4 cut(s) 12, 491, 947, 1054
Hsp92II CATG 8 cut(s) 82, 409, 587, 764, 861, 931, 986, 1236
HspAI GCGC 1 cut(s) 679
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 61, 698, 1187
LmnI GCTCC 1 cut(s) 540
Lsp1109I GCAGC 2 cut(s) 265, 1288
LweI GCATC 3 cut(s) 865, 930, 1114
MaeI CTAG 3 cut(s) 141, 434, 626
MaeIII GTNAC 4 cut(s) 746, 785, 800, 1096
MalI GATC 3 cut(s) 63, 700, 1189
MboI GATC 3 cut(s) 61, 698, 1187
MboII GAAGA 9 cut(s) 37, 60, 114, 255, 479, 727, 916, 969, 1084
MfeI CAATTG 4 cut(s) 50, 313, 592, 818
MflI RGATCY 2 cut(s) 698, 1187
MhlI GDGCHC 1 cut(s) 563
MluCI AATT 9 cut(s) 50, 313, 413, 496, 545, 592, 818, 999, 1153
MlyI GAGTC 4 cut(s) 128, 482, 751, 1046
MmeI TCCRAC 1 cut(s) 390
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 926
MspA1I CMGCKG 1 cut(s) 1279
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 4 cut(s) 22, 683, 1193, 1218
MunI CAATTG 4 cut(s) 50, 313, 592, 818
MvaI CCWGG 3 cut(s) 683, 1193, 1218
NciI CCSGG 1 cut(s) 22
NdeII GATC 3 cut(s) 61, 698, 1187
NlaIII CATG 8 cut(s) 82, 409, 587, 764, 861, 931, 986, 1236
NlaIV GGNNCC 2 cut(s) 562, 1211
NmuCI GTSAC 2 cut(s) 746, 800
NspI RCATGY 1 cut(s) 409
PagI TCATGA 1 cut(s) 760
PceI AGGCCT 1 cut(s) 334
PciI ACATGT 1 cut(s) 405
PfeI GAWTC 7 cut(s) 98, 260, 305, 449, 635, 691, 1075
PfoI TCCNGGA 1 cut(s) 20
PkrI GCNGC 2 cut(s) 280, 1278
PleI GAGTC 4 cut(s) 127, 481, 751, 1046
PpsI GAGTC 4 cut(s) 127, 481, 751, 1046
PscI ACATGT 1 cut(s) 405
PshAI GACNNNNGTC 1 cut(s) 1177
PshBI ATTAAT 1 cut(s) 219
Psp6I CCWGG 3 cut(s) 681, 1191, 1216
PspFI CCCAGC 2 cut(s) 281, 1272
PspGI CCWGG 3 cut(s) 681, 1191, 1216
PspN4I GGNNCC 2 cut(s) 562, 1211
PspPI GGNCC 1 cut(s) 861
PsuI RGATCY 2 cut(s) 698, 1187
RsaI GTAC 3 cut(s) 46, 553, 713
RsaNI GTAC 3 cut(s) 45, 552, 712
RseI CAYNNNNRTG 1 cut(s) 926
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 279, 1277
Sau3AI GATC 3 cut(s) 61, 698, 1187
Sau96I GGNCC 1 cut(s) 861
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 4 cut(s) 128, 482, 751, 1046
ScrFI CCNGG 4 cut(s) 22, 683, 1193, 1218
SduI GDGCHC 1 cut(s) 563
SetI ASST 8 cut(s) 139, 167, 532, 566, 645, 748, 850, 1245
SfaNI GCATC 3 cut(s) 865, 930, 1114
SfcI CTRYAG 1 cut(s) 811
SmiMI CAYNNNNRTG 1 cut(s) 926
Sse9I AATT 9 cut(s) 50, 313, 413, 496, 545, 592, 818, 999, 1153
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 1 cut(s) 1279
SspMI CTAG 3 cut(s) 141, 434, 626
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 4 cut(s) 20, 681, 1191, 1216
StyI CCWWGG 2 cut(s) 386, 702
TaaI ACNGT 2 cut(s) 901, 1176
TasI AATT 9 cut(s) 50, 313, 413, 496, 545, 592, 818, 999, 1153
TatI WGTACW 2 cut(s) 44, 711
TfiI GAWTC 7 cut(s) 98, 260, 305, 449, 635, 691, 1075
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 4 cut(s) 507, 606, 681, 755
TseFI GTSAC 2 cut(s) 746, 800
TseI GCWGC 2 cut(s) 278, 1276
Tsp45I GTSAC 2 cut(s) 746, 800
TspDTI ATGAA 6 cut(s) 252, 318, 363, 407, 916, 1085
TspRI CASTG 4 cut(s) 507, 606, 681, 755
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 3 cut(s) 496, 545, 1153
XceI RCATGY 1 cut(s) 409
XspI CTAG 3 cut(s) 141, 434, 626
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.