pycom03g01130

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001307
Physical Location & Seq
Forward (+)
892026 .. 894293
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01130.1

Sequence Viewer

Length: 1482 bp
ATGTTGAAAAATAGAAAAGCAACTCTTCCACCGACACGGGTCACAAGCTCTCAAACAATGGCGGATTCCCCAAGCCAGACAACCCCACAACCCACAAAGCACCGCCACTCCCCCACGATCCCAAGACCAGAGGCCTCCTCCAAGCCCTCTCTTTCTTCCCCACTCTTCTTCCCCTCCAGAAGAACCGCCGCCTTTGCCTATGGCTTCTCGTTCTTCTGCATCGCTTGCACTTTCTTCCTGGTTTTCAACCCATCTGGCTACTCTTTCCCTTTCGGCTTTAAGAACATCTTCAAAACCCCTTTTGAACTTTCCCGGGAAACCCCATTTTCCTGGAAAGCTGAATATTTCCCGCGTTTGGATGAGAGTGGAGGTTTGCAGTCTGATCCTCCGATGGCTAGTGCGCAACTGCCGGACCCAATTCTTTTCTTGCCCCAAGAATCCAATCAGACTTCGTCCCAGAACACTACGATTCAAGTAACTGGGAAAATGGGATTTTCCGGGAAACTGGAGGGTTCAAGAAAAAATGAATCTTTTGGTAAAGATTCTGATGGGGTTTTGGGACAAGCAGTGGCATTGACCTCGAAAAAGAGTGATGATGCTAATGAGGCATTGTCGGAATCTGAGAAGCAGAGCAGTCAAACTCAGCCCGCTTTTGAATTTTCGAGGGATGATTGTGACCTATTTGATGGAATGTGGGTGAGAGATGATTCGTATCCGCTTTATGCTCCGGGTTCTTGTCCTCTTATTGATGAATCCTTCAATTGTTTTCTTAATAAGAGGCCGGATAATCGCTACGAAAAGTATAGATGGCAACCCAAACATTGCAATCTTCCAAGATTGGATGGTAAGAACATGTTGGGACTATTGAGAGGAAAGCGACTGGTTTTTGTTGGGGATTCTCTTAATAGGAATATGTGGGAGTCTTTGCTATGTCTTCTTCGAAATTCAGTGGATGACAAGAGTGGAGTTGTTGAAGCCTTGGGTAGGAGTGAATTTCGTTCAGAGGGTTCTTACTCTATCGTATTCAAGGAATACAATTGCTCAGTGGAGTTCTTTCGATCGCCATTTCTAGTTCAAGAATGGGAGATGGCAGATGCAAATGGATCAATAAAGGAAACGCTTCGCCTTGATTTGATTGAGAGATCCTCCGATAAGTACAAAACTGCAGATGTTCTCATCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGTTAAACTCATTCTCTCTCCCACTCTATGGTTACTATCAAGAGGGTAGCAACATCTATGATGTATTGAACGTTAAAGAGGCATTTCGGAAAGCTTTAACGACATGGGCAAGATGGGTGGATACCAACTTAAATCCTGAGAAAACTATTGTTTTCTTCCGGGGCTATTCGCCTAATCACTTTAGGTACGTAGACCACATCCAGTACTTTTTTACTTTTAAAACCTCACCGTTCGTTCACAAATATACAGCATCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

494

Amino Acids

56.26

Weight (kDa)

8.45

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 224 - 276 2.8e-22 PMR5 N terminal Domain
PC-Esterase PF13839 277 - 470 1.3e-57 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 402
AccB7I CCANNNNNTGG 1 cut(s) 1250
AccI GTMKAC 1 cut(s) 1413
AccII CGCG 1 cut(s) 352
AciI CCGC 7 cut(s) 62, 103, 186, 189, 350, 648, 716
AclI AACGTT 1 cut(s) 1293
AclWI GGATC 4 cut(s) 112, 377, 1111, 1137
AcsI RAATTY 3 cut(s) 656, 943, 992
AfaI GTAC 3 cut(s) 1157, 1409, 1427
AfiI CCNNNNNNNGG 3 cut(s) 355, 984, 1250
AflIII ACRYGT 1 cut(s) 852
AjnI CCWGG 2 cut(s) 237, 329
AluBI AGCT 3 cut(s) 48, 338, 1316
AluI AGCT 3 cut(s) 48, 338, 1316
AlwI GGATC 4 cut(s) 112, 377, 1111, 1137
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 2 cut(s) 132, 779
ApoI RAATTY 3 cut(s) 656, 943, 992
Asp700I GAANNNNTTC 2 cut(s) 287, 1119
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 412
AsuC2I CCSGG 5 cut(s) 313, 314, 499, 729, 1382
AsuHPI GGTGA 2 cut(s) 709, 1440
AsuII TTCGAA 1 cut(s) 940
AvaI CYCGRG 1 cut(s) 312
AvaII GGWCC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 926
BccI CCATC 8 cut(s) 259, 385, 542, 680, 801, 836, 1081, 1329
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BciT130I CCWGG 2 cut(s) 239, 331
BciVI GTATCC 2 cut(s) 723, 1336
BcnI CCSGG 5 cut(s) 313, 314, 499, 729, 1382
BfaI CTAG 2 cut(s) 396, 1070
BfmI CTRYAG 1 cut(s) 1164
BfuI GTATCC 2 cut(s) 723, 1336
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
BmcAI AGTACT 1 cut(s) 1427
Bme1390I CCNGG 7 cut(s) 239, 313, 314, 331, 499, 729, 1382
Bme18I GGWCC 1 cut(s) 412
BmeT110I CYCGRG 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 7 cut(s) 239, 313, 314, 331, 499, 729, 1382
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 3 cut(s) 228, 586, 1084
BmuI ACTGGG 1 cut(s) 489
BoxI GACNNNNGTC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 926
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 1130, 1162
BpmI CTGGAG 2 cut(s) 160, 527
Bpu14I TTCGAA 1 cut(s) 940
BpuMI CCSGG 5 cut(s) 313, 314, 499, 729, 1382
BsaAI YACGTR 1 cut(s) 1411
BsaBI GATNNNNATC 1 cut(s) 711
BsaJI CCNNGG 3 cut(s) 312, 978, 1381
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 984, 1250
Bse1I ACTGG 5 cut(s) 484, 510, 885, 1199, 1423
Bse3DI GCAATG 1 cut(s) 820
Bse8I GATNNNNATC 1 cut(s) 711
BseBI CCWGG 2 cut(s) 239, 331
BseDI CCNNGG 3 cut(s) 312, 978, 1381
BseGI GGATG 5 cut(s) 364, 673, 847, 958, 1419
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 3 cut(s) 355, 984, 1250
BseMI GCAATG 1 cut(s) 820
BseMII CTCAG 4 cut(s) 612, 656, 1056, 1350
BseNI ACTGG 5 cut(s) 484, 510, 885, 1199, 1423
BseRI GAGGAG 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 352
Bsh1285I CGRYCG 1 cut(s) 1061
BshFI GGCC 2 cut(s) 134, 781
BsiEI CGRYCG 1 cut(s) 1061
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 6 cut(s) 313, 410, 498, 728, 782, 1381
BslFI GGGAC 3 cut(s) 439, 573, 873
BslI CCNNNNNNNGG 3 cut(s) 355, 984, 1250
BsmFI GGGAC 3 cut(s) 439, 573, 873
BsnI GGCC 2 cut(s) 134, 781
BsoBI CYCGRG 1 cut(s) 312
Bsp119I TTCGAA 1 cut(s) 940
Bsp143I GATC 5 cut(s) 117, 382, 1058, 1103, 1142
BspACI CCGC 7 cut(s) 62, 103, 186, 189, 350, 648, 716
BspANI GGCC 2 cut(s) 134, 781
BspCNI CTCAG 4 cut(s) 613, 655, 1055, 1351
BspFNI CGCG 1 cut(s) 352
BspHI TCATGA 1 cut(s) 1204
BspLI GGNNCC 1 cut(s) 414
BspMAI CTGCAG 1 cut(s) 1168
BspPI GGATC 4 cut(s) 112, 377, 1111, 1137
BspT104I TTCGAA 1 cut(s) 940
BsrDI GCAATG 1 cut(s) 820
BsrI ACTGG 5 cut(s) 484, 510, 885, 1199, 1423
BssECI CCNNGG 3 cut(s) 312, 978, 1381
BssMI GATC 5 cut(s) 117, 382, 1058, 1103, 1142
BssT1I CCWWGG 1 cut(s) 978
Bst2UI CCWGG 2 cut(s) 239, 331
Bst4CI ACNGT 1 cut(s) 1452
Bst6I CTCTTC 2 cut(s) 30, 170
BstAPI GCANNNNNTGC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 1411
BstBI TTCGAA 1 cut(s) 940
BstC8I GCNNGC 2 cut(s) 226, 648
BstDEI CTNAG 4 cut(s) 621, 642, 1042, 1359
BstENI CCTNNNNNAGG 1 cut(s) 982
BstF5I GGATG 5 cut(s) 364, 673, 847, 958, 1419
BstFNI CGCG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 5 cut(s) 120, 385, 1061, 1106, 1145
BstMBI GATC 5 cut(s) 117, 382, 1058, 1103, 1142
BstMCI CGRYCG 1 cut(s) 1061
BstMWI GCNNNNNNNGC 3 cut(s) 194, 225, 605
BstNI CCWGG 2 cut(s) 239, 331
BstNSI RCATGY 1 cut(s) 856
BstPAI GACNNNNGTC 1 cut(s) 38
BstSCI CCNGG 7 cut(s) 237, 311, 312, 329, 497, 727, 1380
BstSFI CTRYAG 1 cut(s) 1164
BstSNI TACGTA 1 cut(s) 1411
BstUI CGCG 1 cut(s) 352
BstV2I GAAGAC 1 cut(s) 926
BstX2I RGATCY 1 cut(s) 1142
BstXI CCANNNNNNTGG 1 cut(s) 330
BstYI RGATCY 1 cut(s) 1142
BsuI GTATCC 2 cut(s) 723, 1336
BsuRI GGCC 2 cut(s) 134, 781
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 5 cut(s) 364, 673, 847, 958, 1419
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 4 cut(s) 573, 954, 1050, 1192
Cac8I GCNNGC 2 cut(s) 226, 648
CciI TCATGA 1 cut(s) 1204
CfoI GCGC 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 412
Cfr9I CCCGGG 1 cut(s) 312
Csp6I GTAC 3 cut(s) 1156, 1408, 1426
CspCI CAANNNNNGTGG 2 cut(s) 1320, 1355
CviAII CATG 3 cut(s) 853, 1205, 1326
CviQI GTAC 3 cut(s) 1156, 1408, 1426
DdeI CTNAG 4 cut(s) 621, 642, 1042, 1359
DpnI GATC 5 cut(s) 119, 384, 1060, 1105, 1144
DpnII GATC 5 cut(s) 117, 382, 1058, 1103, 1142
DraI TTTAAA 1 cut(s) 1441
Eam1104I CTCTTC 2 cut(s) 30, 170
EarI CTCTTC 2 cut(s) 30, 170
EciI GGCGGA 1 cut(s) 77
Eco105I TACGTA 1 cut(s) 1411
Eco130I CCWWGG 1 cut(s) 978
Eco147I AGGCCT 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 982
EcoRII CCWGG 2 cut(s) 237, 329
EcoT14I CCWWGG 1 cut(s) 978
ErhI CCWWGG 1 cut(s) 978
FaeI CATG 3 cut(s) 856, 1208, 1329
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 272, 304
FaqI GGGAC 3 cut(s) 439, 573, 873
FatI CATG 3 cut(s) 852, 1204, 1325
FauI CCCGC 2 cut(s) 357, 655
FblI GTMKAC 1 cut(s) 1413
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 5 cut(s) 371, 680, 854, 965, 1406
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 396, 1070
FspI TGCGCA 1 cut(s) 402
GlaI GCGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 189
GsuI CTGGAG 2 cut(s) 160, 527
HaeIII GGCC 2 cut(s) 134, 781
HapII CCGG 6 cut(s) 313, 410, 498, 728, 782, 1381
HhaI GCGC 1 cut(s) 403
Hin1II CATG 3 cut(s) 856, 1208, 1329
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HindIII AAGCTT 1 cut(s) 1314
HpaII CCGG 6 cut(s) 313, 410, 498, 728, 782, 1381
HphI GGTGA 2 cut(s) 709, 1440
Hpy166II GTNNAC 3 cut(s) 1200, 1414, 1459
Hpy188I TCNGA 9 cut(s) 382, 390, 447, 547, 616, 622, 1003, 1150, 1311
Hpy188III TCNNGA 7 cut(s) 177, 516, 1076, 1205, 1218, 1262, 1358
Hpy8I GTNNAC 3 cut(s) 1200, 1414, 1459
HpyAV CCTTC 1 cut(s) 766
HpyCH4III ACNGT 1 cut(s) 1452
HpyCH4IV ACGT 2 cut(s) 1293, 1410
HpyCH4V TGCA 6 cut(s) 219, 228, 376, 825, 1097, 1166
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 225, 605
HpyF3I CTNAG 4 cut(s) 621, 642, 1042, 1359
HpySE526I ACGT 2 cut(s) 1293, 1410
Hsp92II CATG 3 cut(s) 856, 1208, 1329
HspAI GCGC 1 cut(s) 401
Kzo9I GATC 5 cut(s) 117, 382, 1058, 1103, 1142
LmnI GCTCC 1 cut(s) 730
LweI GCATC 3 cut(s) 228, 586, 1084
MaeI CTAG 2 cut(s) 396, 1070
MaeII ACGT 2 cut(s) 1293, 1410
MaeIII GTNAC 5 cut(s) 40, 475, 674, 1190, 1253
MalI GATC 5 cut(s) 119, 384, 1060, 1105, 1144
MboI GATC 5 cut(s) 117, 382, 1058, 1103, 1142
MfeI CAATTG 2 cut(s) 760, 1036
MflI RGATCY 1 cut(s) 1142
MluCI AATT 6 cut(s) 417, 656, 760, 943, 992, 1036
MlyI GAGTC 2 cut(s) 929, 1195
MmeI TCCRAC 1 cut(s) 594
MroXI GAANNNNTTC 2 cut(s) 287, 1119
MseI TTAA 8 cut(s) 279, 771, 903, 1226, 1296, 1319, 1352, 1440
MspI CCGG 6 cut(s) 313, 410, 498, 728, 782, 1381
MspR9I CCNGG 7 cut(s) 239, 313, 314, 331, 499, 729, 1382
MunI CAATTG 2 cut(s) 760, 1036
MvaI CCWGG 2 cut(s) 239, 331
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 3 cut(s) 194, 225, 605
NciI CCSGG 5 cut(s) 313, 314, 499, 729, 1382
NdeII GATC 5 cut(s) 117, 382, 1058, 1103, 1142
NlaIII CATG 3 cut(s) 856, 1208, 1329
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 3 cut(s) 40, 674, 1190
NsbI TGCGCA 1 cut(s) 402
NspI RCATGY 1 cut(s) 856
NspV TTCGAA 1 cut(s) 940
PagI TCATGA 1 cut(s) 1204
PceI AGGCCT 1 cut(s) 134
PciI ACATGT 1 cut(s) 852
PdmI GAANNNNTTC 2 cut(s) 287, 1119
PfeI GAWTC 9 cut(s) 65, 437, 469, 527, 542, 617, 707, 752, 896
PflFI GACNNNGTC 1 cut(s) 451
PflMI CCANNNNNTGG 1 cut(s) 1250
PfoI TCCNGGA 2 cut(s) 329, 497
PkrI GCNGC 1 cut(s) 190
Ple19I CGATCG 1 cut(s) 1061
PleI GAGTC 2 cut(s) 928, 1195
PpsI GAGTC 2 cut(s) 928, 1195
Ppu21I YACGTR 1 cut(s) 1411
PscI ACATGT 1 cut(s) 852
PshAI GACNNNNGTC 1 cut(s) 38
Psp1406I AACGTT 1 cut(s) 1293
Psp6I CCWGG 2 cut(s) 237, 329
PspGI CCWGG 2 cut(s) 237, 329
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 1 cut(s) 412
PstI CTGCAG 1 cut(s) 1168
PsuI RGATCY 1 cut(s) 1142
PsyI GACNNNGTC 1 cut(s) 451
PvuI CGATCG 1 cut(s) 1061
RsaI GTAC 3 cut(s) 1157, 1409, 1427
RsaNI GTAC 3 cut(s) 1156, 1408, 1426
SaqAI TTAA 8 cut(s) 279, 771, 903, 1226, 1296, 1319, 1352, 1440
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 5 cut(s) 117, 382, 1058, 1103, 1142
Sau96I GGNCC 1 cut(s) 412
ScaI AGTACT 1 cut(s) 1427
SchI GAGTC 2 cut(s) 929, 1195
ScrFI CCNGG 7 cut(s) 239, 313, 314, 331, 499, 729, 1382
SfaNI GCATC 3 cut(s) 228, 586, 1084
SfcI CTRYAG 1 cut(s) 1164
SfuI TTCGAA 1 cut(s) 940
SinI GGWCC 1 cut(s) 412
SmaI CCCGGG 1 cut(s) 314
SnaBI TACGTA 1 cut(s) 1411
Sse9I AATT 6 cut(s) 417, 656, 760, 943, 992, 1036
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 7 cut(s) 62, 103, 186, 189, 350, 648, 716
SspI AATATT 1 cut(s) 344
SspMI CTAG 2 cut(s) 396, 1070
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 7 cut(s) 237, 311, 312, 329, 497, 727, 1380
StyI CCWWGG 1 cut(s) 978
TaaI ACNGT 1 cut(s) 1452
TaiI ACGT 2 cut(s) 1296, 1413
TaqI TCGA 4 cut(s) 581, 662, 940, 1057
TasI AATT 6 cut(s) 417, 656, 760, 943, 992, 1036
TatI WGTACW 2 cut(s) 1155, 1425
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 9 cut(s) 65, 437, 469, 527, 542, 617, 707, 752, 896
Tru1I TTAA 8 cut(s) 279, 771, 903, 1226, 1296, 1319, 1352, 1440
Tru9I TTAA 8 cut(s) 279, 771, 903, 1226, 1296, 1319, 1352, 1440
TscAI CASTG 4 cut(s) 573, 954, 1050, 1199
TseFI GTSAC 3 cut(s) 40, 674, 1190
Tsp45I GTSAC 3 cut(s) 40, 674, 1190
TspDTI ATGAA 3 cut(s) 540, 765, 1467
TspMI CCCGGG 1 cut(s) 312
TspRI CASTG 4 cut(s) 573, 954, 1050, 1199
Tth111I GACNNNGTC 1 cut(s) 451
Van91I CCANNNNNTGG 1 cut(s) 1250
VpaK11BI GGWCC 1 cut(s) 412
XagI CCTNNNNNAGG 1 cut(s) 982
XapI RAATTY 3 cut(s) 656, 943, 992
XceI RCATGY 1 cut(s) 856
XmaI CCCGGG 1 cut(s) 312
XmiI GTMKAC 1 cut(s) 1413
XmnI GAANNNNTTC 2 cut(s) 287, 1119
XspI CTAG 2 cut(s) 396, 1070
ZrmI AGTACT 1 cut(s) 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.