Rw0G002560

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00078
OG0001307
Physical Location & Seq
Reverse (-)
35117 .. 37546
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002560.1

Sequence Viewer

Length: 1500 bp
ATGGCAGATTCCTCACCCCAAACTACAAAGCACCACTCACCCACTAAAGCAGAGCCCAAGGCTTCTCTTTCTTCCATCTTCTTCACTTCAAGAAAAGCCTCCGCCTTTGCTTATGGAATCGCCTTTGCTCTCATTGCCTTCACTTCCTTCTGGGTTTTCAACCCATCTGGCTACTCTTTCCCTTTTAGCTTCAACACCATCTTCTACTCTTCTCCTTCCAACTCTTCTCAGGAAGTTACTAAATCCCCAAAGATCGAATCTTTACCACATTTGGGCAGCAATGGAAGTTTGAACAGTGAAATGGGTGCTTCTCAGTTTTCCAGGAAGATGGGAAATCAGAGCAGTACTCAAATGGGTACTGATCAATCTTCAAAACCCGTGATTTCTTTGCCCCAAGAATCCAATCACACCAGAAATGAGTCTTCTTTTTCTGAAGGTTCTAGTGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGGTTGTCTGGGTTTGAGTTGATTAATGGTTATGATTCATACCCACTTTATGCTGCTGGGTCTTGTCCTTACATTGATGAGTCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGTTATGAAAAGTATAGATGGCAACCCAAAAACTGCAATTCGATGAATGGAAGGAACATGTTGGGATTATTGAGAGGAAAGCGTCTAATTTTTTGTCTTCTTAGGAATTCAGTGGATGATAAGAGCAGAGTTTTTGAAGCTTCTGGCAGGAGTGAATTTTGTACAGAGGGCGCCTACTATTTTGTATTCAAGGATTACAATTGTTCACTGGAGTTTGTTCAATCACCATTTCTAGTTCAAGAATCAGAGGTGCTAACCACAAATGGGTCAAAGAAGGAAACACTGCGCCTGGATATGATTCAGAGATCCTTGGATAAGTATAAAAGTGCAGATGTTCTCGTCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGACTATATCTATAGTCAATTGAATGTCAAAGAGGCGTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTGTTGTTTTCTTCCGGGGCTATTCGCCGAATCACTTTAGTGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAATTCAATACGAGGCATACAAAGGAAAATATCCTGCAAAGATGAGAATACTGGACTCAGTAATCAGGGAAATGAAGACTCCAATCTTTTATCTGAATGTTACAAAAATGACTGATTTTCGGCGGGATGCTCATCCATCCATTTACAGAAAGCAGAATTTGACGGAGGAGGAGAGACAGCTGTCTTTGCGATCCCAGGATTGCAGTCATTGGTGCCTCCCTGGTGTTCGTGATACATGGAACGAGCTTCTATGTGCTCATCTCCTTAGATATATCCAGCATCGGAGGAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

499

Amino Acids

56.82

Weight (kDa)

8.94

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 177 - 217 4.9e-15 PMR5 N terminal Domain
PC-Esterase PF13839 235 - 487 1.8e-78 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 782, 1416
AciI CCGC 2 cut(s) 102, 1327
AclWI GGATC 2 cut(s) 912, 1389
AcsI RAATTY 3 cut(s) 718, 767, 1360
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 783
AfaI GTAC 3 cut(s) 346, 358, 775
AfiI CCNNNNNNNGG 3 cut(s) 272, 611, 876
AflIII ACRYGT 1 cut(s) 669
AjnI CCWGG 4 cut(s) 320, 900, 1398, 1423
AleI CACNNNNGTG 1 cut(s) 1155
AluBI AGCT 6 cut(s) 189, 465, 752, 1067, 1384, 1450
AluI AGCT 6 cut(s) 189, 465, 752, 1067, 1384, 1450
Alw21I GWGCWC 1 cut(s) 1462
Alw26I GTCTC 2 cut(s) 1372, 1486
AlwI GGATC 2 cut(s) 912, 1389
AoxI GGCC 2 cut(s) 602, 1080
ApeKI GCWGC 2 cut(s) 276, 548
ApoI RAATTY 3 cut(s) 718, 767, 1360
AseI ATTAAT 1 cut(s) 519
AspLEI GCGC 2 cut(s) 785, 900
AspS9I GGNCC 1 cut(s) 1080
AsuC2I CCSGG 1 cut(s) 1133
AsuHPI GGTGA 4 cut(s) 6, 30, 828, 1031
BanI GGYRCC 2 cut(s) 782, 1416
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 1156, 1188
BbsI GAAGAC 4 cut(s) 414, 701, 946, 1286
Bbv12I GWGCWC 1 cut(s) 1462
BbvI GCAGC 2 cut(s) 288, 535
BccI CCATC 8 cut(s) 83, 172, 206, 322, 624, 1080, 1161, 1348
BciT130I CCWGG 4 cut(s) 322, 902, 1400, 1425
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 1 cut(s) 1133
BcoDI GTCTC 2 cut(s) 1372, 1486
BfaI CTAG 2 cut(s) 441, 845
BfmI CTRYAG 1 cut(s) 1030
BfoI RGCGCY 1 cut(s) 786
BisI GCNGC 2 cut(s) 277, 549
BlsI GCNGC 2 cut(s) 278, 550
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 5 cut(s) 322, 902, 1133, 1400, 1425
BmgT120I GGNCC 1 cut(s) 1080
BmiI GGNNCC 2 cut(s) 784, 1418
BmrFI CCNGG 5 cut(s) 322, 902, 1133, 1400, 1425
BmsI GCATC 3 cut(s) 1084, 1321, 1492
BoxI GACNNNNGTC 1 cut(s) 1384
BpiI GAAGAC 4 cut(s) 414, 701, 946, 1286
BplI GAGNNNNNCTC 2 cut(s) 331, 363
BpmI CTGGAG 2 cut(s) 842, 1197
BpuMI CCSGG 1 cut(s) 1133
BsaBI GATNNNNATC 1 cut(s) 1335
BsaHI GRCGYC 1 cut(s) 783
BsaI GGTCTC 1 cut(s) 1486
BsaJI CCNNGG 5 cut(s) 57, 921, 1132, 1398, 1423
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 611, 876
Bse1I ACTGG 4 cut(s) 825, 974, 1180, 1260
Bse3DI GCAATG 3 cut(s) 132, 286, 496
Bse8I GATNNNNATC 1 cut(s) 1335
BseBI CCWGG 4 cut(s) 322, 902, 1400, 1425
BseDI CCNNGG 5 cut(s) 57, 921, 1132, 1398, 1423
BseGI GGATG 5 cut(s) 733, 1099, 1336, 1336, 1340
BseJI GATNNNNATC 1 cut(s) 1335
BseLI CCNNNNNNNGG 3 cut(s) 272, 611, 876
BseMI GCAATG 3 cut(s) 132, 286, 496
BseMII CTCAG 3 cut(s) 242, 326, 1275
BseNI ACTGG 4 cut(s) 825, 974, 1180, 1260
BseRI GAGGAG 2 cut(s) 1385, 1388
BseXI GCAGC 2 cut(s) 288, 535
BseYI CCCAGC 1 cut(s) 551
BsgI GTGCAG 1 cut(s) 960
BshFI GGCC 2 cut(s) 604, 1082
BshNI GGYRCC 2 cut(s) 782, 1416
BsiHKAI GWGCWC 1 cut(s) 1462
BsiSI CCGG 1 cut(s) 1132
BslI CCNNNNNNNGG 3 cut(s) 272, 611, 876
BsmAI GTCTC 2 cut(s) 1372, 1486
BsnI GGCC 2 cut(s) 604, 1082
Bso31I GGTCTC 1 cut(s) 1486
Bsp1286I GDGCHC 2 cut(s) 57, 1462
Bsp1407I TGTACA 1 cut(s) 773
Bsp143I GATC 4 cut(s) 252, 361, 917, 1394
BspACI CCGC 2 cut(s) 102, 1327
BspANI GGCC 2 cut(s) 604, 1082
BspCNI CTCAG 3 cut(s) 241, 325, 1274
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 2 cut(s) 784, 1418
BspPI GGATC 2 cut(s) 912, 1389
BspT107I GGYRCC 2 cut(s) 782, 1416
BspTNI GGTCTC 1 cut(s) 1486
BsrDI GCAATG 3 cut(s) 132, 286, 496
BsrGI TGTACA 1 cut(s) 773
BsrI ACTGG 4 cut(s) 825, 974, 1180, 1260
BssECI CCNNGG 5 cut(s) 57, 921, 1132, 1398, 1423
BssMI GATC 4 cut(s) 252, 361, 917, 1394
BssNI GRCGYC 1 cut(s) 783
BssT1I CCWWGG 2 cut(s) 57, 921
Bst2UI CCWGG 4 cut(s) 322, 902, 1400, 1425
Bst4CI ACNGT 2 cut(s) 296, 1120
Bst6I CTCTTC 2 cut(s) 214, 229
BstACI GRCGYC 1 cut(s) 783
BstAUI TGTACA 1 cut(s) 773
BstDEI CTNAG 5 cut(s) 228, 312, 713, 1261, 1469
BstF5I GGATG 5 cut(s) 733, 1099, 1336, 1336, 1340
BstH2I RGCGCY 1 cut(s) 786
BstHHI GCGC 2 cut(s) 785, 900
BstKTI GATC 4 cut(s) 255, 364, 920, 1397
BstMAI GTCTC 2 cut(s) 1372, 1486
BstMBI GATC 4 cut(s) 252, 361, 917, 1394
BstMWI GCNNNNNNNGC 2 cut(s) 134, 1390
BstNI CCWGG 4 cut(s) 322, 902, 1400, 1425
BstNSI RCATGY 1 cut(s) 673
BstPAI GACNNNNGTC 1 cut(s) 1384
BstSCI CCNGG 5 cut(s) 320, 900, 1131, 1398, 1423
BstSFI CTRYAG 1 cut(s) 1030
BstV1I GCAGC 2 cut(s) 288, 535
BstV2I GAAGAC 4 cut(s) 414, 701, 946, 1286
BstX2I RGATCY 1 cut(s) 917
BstXI CCANNNNNNTGG 2 cut(s) 328, 1090
BstYI RGATCY 1 cut(s) 917
BsuRI GGCC 2 cut(s) 604, 1082
BtsCI GGATG 5 cut(s) 733, 1099, 1336, 1336, 1340
BtsI GCAGTG 1 cut(s) 893
BtsIMutI CAGTG 5 cut(s) 301, 729, 818, 893, 967
CciI TCATGA 1 cut(s) 979
CfoI GCGC 2 cut(s) 785, 900
Cfr13I GGNCC 1 cut(s) 1080
CseI GACGC 1 cut(s) 683
Csp6I GTAC 3 cut(s) 345, 357, 774
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 5 cut(s) 670, 980, 1077, 1190, 1440
CviQI GTAC 3 cut(s) 345, 357, 774
DdeI CTNAG 5 cut(s) 228, 312, 713, 1261, 1469
DinI GGCGCC 1 cut(s) 784
DpnI GATC 4 cut(s) 254, 363, 919, 1396
DpnII GATC 4 cut(s) 252, 361, 917, 1394
Eam1104I CTCTTC 2 cut(s) 214, 229
EarI CTCTTC 2 cut(s) 214, 229
EciI GGCGGA 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 57, 921
Eco147I AGGCCT 1 cut(s) 604
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 1486
Eco57I CTGAAG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 718
EcoRII CCWGG 4 cut(s) 320, 900, 1398, 1423
EcoT14I CCWWGG 2 cut(s) 57, 921
EcoT38I GRGCYC 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 784
EheI GGCGCC 1 cut(s) 784
ErhI CCWWGG 2 cut(s) 57, 921
FaeI CATG 5 cut(s) 673, 983, 1080, 1193, 1443
FatI CATG 5 cut(s) 669, 979, 1076, 1189, 1439
FauI CCCGC 1 cut(s) 1320
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 277, 549
FokI GGATG 5 cut(s) 740, 1106, 1323, 1327, 1343
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 277, 549
FspBI CTAG 2 cut(s) 441, 845
GlaI GCGC 2 cut(s) 784, 899
GluI GCNGC 2 cut(s) 277, 549
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 2 cut(s) 842, 1197
HaeII RGCGCY 1 cut(s) 786
HaeIII GGCC 2 cut(s) 604, 1082
HapII CCGG 1 cut(s) 1132
HgaI GACGC 1 cut(s) 683
HhaI GCGC 2 cut(s) 785, 900
Hin1I GRCGYC 1 cut(s) 783
Hin1II CATG 5 cut(s) 673, 983, 1080, 1193, 1443
Hin6I GCGC 2 cut(s) 783, 898
HinP1I GCGC 2 cut(s) 783, 898
HindIII AAGCTT 1 cut(s) 750
HpaII CCGG 1 cut(s) 1132
HphI GGTGA 4 cut(s) 6, 30, 828, 1031
Hpy166II GTNNAC 2 cut(s) 818, 975
Hpy188I TCNGA 7 cut(s) 339, 433, 859, 915, 1197, 1299, 1488
Hpy188III TCNNGA 8 cut(s) 90, 230, 851, 980, 993, 1013, 1109, 1433
Hpy8I GTNNAC 2 cut(s) 818, 975
HpyAV CCTTC 6 cut(s) 148, 157, 225, 428, 657, 880
HpyCH4III ACNGT 2 cut(s) 296, 1120
HpyCH4V TGCA 4 cut(s) 648, 941, 1241, 1407
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 1390
HpyF3I CTNAG 5 cut(s) 228, 312, 713, 1261, 1469
Hsp92I GRCGYC 1 cut(s) 783
Hsp92II CATG 5 cut(s) 673, 983, 1080, 1193, 1443
HspAI GCGC 2 cut(s) 783, 898
KasI GGCGCC 1 cut(s) 782
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 4 cut(s) 252, 361, 917, 1394
Lsp1109I GCAGC 2 cut(s) 288, 535
LweI GCATC 3 cut(s) 1084, 1321, 1492
MaeI CTAG 2 cut(s) 441, 845
MaeIII GTNAC 5 cut(s) 235, 965, 1004, 1019, 1303
MalI GATC 4 cut(s) 254, 363, 919, 1396
MboI GATC 4 cut(s) 252, 361, 917, 1394
MfeI CAATTG 3 cut(s) 583, 811, 1037
MflI RGATCY 1 cut(s) 917
MhlI GDGCHC 2 cut(s) 57, 1462
MluCI AATT 9 cut(s) 583, 649, 699, 718, 767, 811, 1037, 1206, 1360
Mly113I GGCGCC 1 cut(s) 783
MlyI GAGTC 5 cut(s) 428, 584, 970, 1253, 1276
MmeI TCCRAC 2 cut(s) 243, 1175
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 1155
MspA1I CMGCKG 1 cut(s) 1384
MspI CCGG 1 cut(s) 1132
MspR9I CCNGG 5 cut(s) 322, 902, 1133, 1400, 1425
MunI CAATTG 3 cut(s) 583, 811, 1037
MvaI CCWGG 4 cut(s) 322, 902, 1400, 1425
MwoI GCNNNNNNNGC 2 cut(s) 134, 1390
NarI GGCGCC 1 cut(s) 783
NciI CCSGG 1 cut(s) 1133
NdeII GATC 4 cut(s) 252, 361, 917, 1394
NlaIII CATG 5 cut(s) 673, 983, 1080, 1193, 1443
NlaIV GGNNCC 2 cut(s) 784, 1418
NmuCI GTSAC 2 cut(s) 965, 1019
NspI RCATGY 1 cut(s) 673
OliI CACNNNNGTG 1 cut(s) 1155
PagI TCATGA 1 cut(s) 979
PceI AGGCCT 1 cut(s) 604
PciI ACATGT 1 cut(s) 669
PfeI GAWTC 8 cut(s) 8, 117, 257, 398, 530, 854, 910, 1147
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 2 cut(s) 278, 550
PleI GAGTC 5 cut(s) 427, 583, 970, 1253, 1276
PluTI GGCGCC 1 cut(s) 786
PpsI GAGTC 5 cut(s) 427, 583, 970, 1253, 1276
PscI ACATGT 1 cut(s) 669
PshAI GACNNNNGTC 1 cut(s) 1384
PshBI ATTAAT 1 cut(s) 519
Psp6I CCWGG 4 cut(s) 320, 900, 1398, 1423
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 4 cut(s) 320, 900, 1398, 1423
PspN4I GGNNCC 2 cut(s) 784, 1418
PspPI GGNCC 1 cut(s) 1080
PsuI RGATCY 1 cut(s) 917
PvuII CAGCTG 1 cut(s) 1384
RsaI GTAC 3 cut(s) 346, 358, 775
RsaNI GTAC 3 cut(s) 345, 357, 774
RseI CAYNNNNRTG 1 cut(s) 1155
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 2 cut(s) 277, 549
Sau3AI GATC 4 cut(s) 252, 361, 917, 1394
Sau96I GGNCC 1 cut(s) 1080
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 5 cut(s) 428, 584, 970, 1253, 1276
ScrFI CCNGG 5 cut(s) 322, 902, 1133, 1400, 1425
SduI GDGCHC 2 cut(s) 57, 1462
SfaNI GCATC 3 cut(s) 1084, 1321, 1492
SfcI CTRYAG 1 cut(s) 1030
SfoI GGCGCC 1 cut(s) 784
SmiMI CAYNNNNRTG 1 cut(s) 1155
Sse9I AATT 9 cut(s) 583, 649, 699, 718, 767, 811, 1037, 1206, 1360
SseBI AGGCCT 1 cut(s) 604
SsiI CCGC 2 cut(s) 102, 1327
SspDI GGCGCC 1 cut(s) 782
SspMI CTAG 2 cut(s) 441, 845
StuI AGGCCT 1 cut(s) 604
StyD4I CCNGG 5 cut(s) 320, 900, 1131, 1398, 1423
StyI CCWWGG 2 cut(s) 57, 921
TaaI ACNGT 2 cut(s) 296, 1120
TaqI TCGA 2 cut(s) 255, 653
TasI AATT 9 cut(s) 583, 649, 699, 718, 767, 811, 1037, 1206, 1360
TatI WGTACW 2 cut(s) 344, 773
TfiI GAWTC 8 cut(s) 8, 117, 257, 398, 530, 854, 910, 1147
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 5 cut(s) 301, 729, 825, 900, 974
TseFI GTSAC 2 cut(s) 965, 1019
TseI GCWGC 2 cut(s) 276, 548
Tsp45I GTSAC 2 cut(s) 965, 1019
TspDTI ATGAA 4 cut(s) 522, 633, 671, 1292
TspGWI ACGGA 1 cut(s) 1382
TspRI CASTG 5 cut(s) 301, 729, 825, 900, 974
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 3 cut(s) 718, 767, 1360
XceI RCATGY 1 cut(s) 673
XspI CTAG 2 cut(s) 441, 845
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.