Rorug05G0473500

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001307
Physical Location & Seq
Forward (+)
65090301 .. 65094918
4618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0473500.1

Sequence Viewer

Length: 2022 bp
ATGGATGAATTTCCAAGTTCCATGAATAATTTCAAGCTTTACCAGAACTCAATGCCAACTTCAGGTCAGAATATCCTTGTTATTGAATCTGATCAACACAATCATGAATTTAGTGATCCCAGTCTCTTTCCATCCAATCCAAACCCACATTCTCATGATGATTCATCTTCATCTTTGGGTTTGAGCTCAGAGGGGGAGTATTATTCTCCCTCTATTGCTACTCTCCAATACATAAGTCAGATGCTTATGGAAGAAGACTTGGAGAACAAACCCTGCATGCTTCAGGACTGTTTGGCCCTCCAAGCCACTGAGAAATCCTTACATGATGTCCTAGTTCAGCAATATCCTTCTTCGACTAATCACCTTCTCACTTCTTCCACGCAGCAAAATGTTGAGATATCTGATGATTTCATTAACCACAGAAGTAATAGCTCCACTGCCGCTAGGAACTGGGATGCTGGCTCAGGTTGGATTTCTTTACAAGATGTTCTAGAATCATTTCCTGTGGAAAATACTGCCCTTTCGGTTCCAAATCCTTTTTCCTCAAATGGCAAGGGTGAAATCATAGATCAAGAAAGGGACTCATCATTTCTCATACAGCCAAGGGAGCTGACTGAGGATGGGAATGACTCAATAAACAGATCAAGGAGCAAGAAAGATCGCCAGTGGGAGGATAGTGATTATCAAGAACAAGGGAGGAGCAACAAGCAGACAGCACTTTACGCAGCTGAATCTGAGCCACCAGAGATGTTGGATCAGGTACTGCTCTATCAATATCAAAACTCATGTTCTTCTCTTCAGGAATCTGATCAGCTTAAAAGGAGAAGTGGACTTAGAGGATCCAAAGGCAAAAGAACAGGAAAGAAAAAAATGGATGACAACAGAGCAGTAGTGGATTTTCAGACACTTCTAACTCAATGTGCAAAAGCTGCTGCAAGCTATGACACAAGGACTGCGAATGAACAACTCAAGCTGATAAGGCAGCACTCATCTCCCCATGGTGATGGAACCCAACGATTAGCTCATTACTTTGCCAATGGCCTCGAAGAACGCTTGATCGCTGCGGTTCCCTTGTACAATCCCGTTTCCCTTTTCAGTTATAAGATGTCAGCTGCTGATCTCTTAAAAGCTTACCAGACTTATATCAAAGCATGCCCTTTCAAGCTGATGTCAAATATCTACGCTAACAAAACTATTTTCAAGCTAGCAGAGAAAGTAACGAGGCTTCACATAATCGATTTTGGTATTCTCTATGGCTACCAATGGCCTTGCCTTATCCAGATGCTTGCGAAAAGACCCTCCGGACCTCCAATGCTTCACATTACTGGTATTGAATTTCCCCAATCAGGATTTCGACCATCTGGGAGGCTTGAAGAGACGGGAAACCGCCTAGCGAAATACTGCAAGAGATTCGATGTCCCATTTGAGTACAACTTCATAGCACAGAGTTGGGACACAATTCAATATGAAGATATCAAACTTGACAGAGATGAGTTGACTGTAGTGAACTGCTTGTACAGGTTAAAGAACTTACATGATGAAACAGTAATCAACAGTCCAAGGGATACAGTTTTGAAGCTTATCAGGAGAATCAACCCTGATATCTTCATCCATGGAGTGGTTAATGGAGCCTACAATGCACCCTTCTTCAACATACGGTTCCGGGAGGCACTCTACTATTTCTCTTCTTTGTTTGATATGTTTGAGGAGACTTTGCCCAGAGAAGATCAACAGAGGCTGCTCTACGAACAAGAGATATTTGGTAGAGATATTATCAATGTGATAGCATGTGAGGGTTCCAGGAGGCTTGAAAAGCCTGAAACATACAAGCAGTGGCAGATAAGAAACACTAGAGCTGGATTCAAGCAGTTACCATTGAACCAGGAGATCGTGAAGAAAGTTAAGAATATTGTAAGGTTAGATTACCATGAGGACTTTGTTGTTGACGAAGATGGCAAGTGGCTCTTGCAGGGATGGAAAGGCCGAATAATACATGCTATTTCTTGCTGGAAATCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

673

Amino Acids

77.3

Weight (kDa)

5.82

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 301 - 671 4.9e-116 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1101
AccB7I CCANNNNNTGG 1 cut(s) 1618
AccIII TCCGGA 1 cut(s) 1301
AciI CCGC 3 cut(s) 441, 1064, 1387
AclWI GGATC 4 cut(s) 110, 762, 834, 847
AcsI RAATTY 3 cut(s) 8, 107, 1334
AcuI CTGAAG 3 cut(s) 45, 266, 782
AfaI GTAC 4 cut(s) 762, 1076, 1430, 1517
AfiI CCNNNNNNNGG 4 cut(s) 62, 670, 1346, 1618
AjnI CCWGG 2 cut(s) 1799, 1881
AjuI GAANNNNNNNTTGG 6 cut(s) 133, 165, 523, 555, 1335, 1367
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 3 cut(s) 128, 1370, 1703
AlwI GGATC 4 cut(s) 110, 762, 834, 847
AlwNI CAGNNNCTG 3 cut(s) 763, 1115, 1738
Aor13HI TCCGGA 1 cut(s) 1301
AoxI GGCC 4 cut(s) 294, 1039, 1265, 1981
ApeKI GCWGC 8 cut(s) 382, 725, 929, 932, 982, 1061, 1112, 1738
ApoI RAATTY 3 cut(s) 8, 107, 1334
Asp700I GAANNNNTTC 2 cut(s) 29, 498
AspS9I GGNCC 2 cut(s) 295, 1304
AsuC2I CCSGG 1 cut(s) 1664
AsuHPI GGTGA 3 cut(s) 353, 569, 1013
AsuNHI GCTAGC 1 cut(s) 1204
AvaII GGWCC 1 cut(s) 1304
BamHI GGATCC 1 cut(s) 839
BanII GRGCYC 1 cut(s) 188
BarI GAAGNNNNNNTAC 2 cut(s) 1209, 1241
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 8 cut(s) 394, 737, 916, 919, 994, 1048, 1099, 1725
BccI CCATC 6 cut(s) 139, 614, 998, 1366, 1946, 1968
BcgI CGANNNNNNTGC 2 cut(s) 1393, 1427
BciT130I CCWGG 2 cut(s) 1801, 1883
BciVI GTATCC 1 cut(s) 1558
BclI TGATCA 2 cut(s) 91, 808
BcnI CCSGG 1 cut(s) 1664
BcoDI GTCTC 3 cut(s) 128, 1370, 1703
BfaI CTAG 6 cut(s) 332, 444, 491, 1205, 1391, 1851
BfmI CTRYAG 1 cut(s) 1500
BfuI GTATCC 1 cut(s) 1558
BisI GCNGC 9 cut(s) 383, 441, 726, 930, 933, 983, 1062, 1113, 1739
BlsI GCNGC 9 cut(s) 384, 442, 727, 931, 934, 984, 1063, 1114, 1740
Bme1390I CCNGG 3 cut(s) 1664, 1801, 1883
Bme18I GGWCC 1 cut(s) 1304
BmgT120I GGNCC 2 cut(s) 295, 1304
BmiI GGNNCC 7 cut(s) 528, 841, 1009, 1068, 1630, 1661, 1798
BmrFI CCNGG 3 cut(s) 1664, 1801, 1883
BmrI ACTGGG 2 cut(s) 114, 460
BmsI GCATC 3 cut(s) 231, 445, 1272
BmtI GCTAGC 1 cut(s) 1208
BmuI ACTGGG 2 cut(s) 114, 460
BpiI GAAGAC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 463
BpuEI CTTGAG 1 cut(s) 953
BpuMI CCSGG 1 cut(s) 1664
Bsa29I ATCGAT 1 cut(s) 1236
BsaJI CCNNGG 4 cut(s) 602, 997, 1559, 1612
BsaWI WCCGGW 1 cut(s) 1301
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 670, 1346, 1618
Bse1I ACTGG 4 cut(s) 120, 455, 664, 1330
BseAI TCCGGA 1 cut(s) 1301
BseBI CCWGG 2 cut(s) 1801, 1883
BseCI ATCGAT 1 cut(s) 1236
BseDI CCNNGG 4 cut(s) 602, 997, 1559, 1612
BseGI GGATG 7 cut(s) 10, 131, 460, 625, 880, 1608, 1979
BseLI CCNNNNNNNGG 4 cut(s) 62, 670, 1346, 1618
BseMII CTCAG 5 cut(s) 201, 300, 477, 606, 726
BseNI ACTGG 4 cut(s) 120, 455, 664, 1330
BseRI GAGGAG 2 cut(s) 712, 1721
BseXI GCAGC 8 cut(s) 394, 737, 916, 919, 994, 1048, 1099, 1725
BshFI GGCC 4 cut(s) 296, 1041, 1267, 1983
BshVI ATCGAT 1 cut(s) 1236
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 2 cut(s) 1302, 1663
BslFI GGGAC 3 cut(s) 593, 1403, 1466
BslI CCNNNNNNNGG 4 cut(s) 62, 670, 1346, 1618
BsmAI GTCTC 3 cut(s) 128, 1370, 1703
BsmBI CGTCTC 1 cut(s) 1370
BsmFI GGGAC 3 cut(s) 593, 1403, 1466
BsnI GGCC 4 cut(s) 296, 1041, 1267, 1983
Bsp1286I GDGCHC 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 1301
Bsp1407I TGTACA 2 cut(s) 1074, 1515
Bsp19I CCATGG 2 cut(s) 997, 1612
BspACI CCGC 3 cut(s) 441, 1064, 1387
BspANI GGCC 4 cut(s) 296, 1041, 1267, 1983
BspCNI CTCAG 5 cut(s) 200, 301, 476, 607, 727
BspDI ATCGAT 1 cut(s) 1236
BspEI TCCGGA 1 cut(s) 1301
BspHI TCATGA 2 cut(s) 103, 154
BspLI GGNNCC 7 cut(s) 528, 841, 1009, 1068, 1630, 1661, 1798
BspOI GCTAGC 1 cut(s) 1208
BspPI GGATC 4 cut(s) 110, 762, 834, 847
BsrGI TGTACA 2 cut(s) 1074, 1515
BsrI ACTGG 4 cut(s) 120, 455, 664, 1330
BssECI CCNNGG 4 cut(s) 602, 997, 1559, 1612
BssT1I CCWWGG 4 cut(s) 602, 997, 1559, 1612
Bst2UI CCWGG 2 cut(s) 1801, 1883
Bst4CI ACNGT 6 cut(s) 290, 1501, 1546, 1556, 1570, 1659
Bst6I CTCTTC 3 cut(s) 801, 1368, 1690
BstAPI GCANNNNNTGC 1 cut(s) 929
BstAUI TGTACA 2 cut(s) 1074, 1515
BstC8I GCNNGC 6 cut(s) 278, 460, 937, 1153, 1206, 1287
BstDEI CTNAG 6 cut(s) 187, 309, 463, 615, 735, 833
BstDSI CCRYGG 2 cut(s) 997, 1612
BstF5I GGATG 7 cut(s) 10, 131, 460, 625, 880, 1608, 1979
BstMAI GTCTC 3 cut(s) 128, 1370, 1703
BstMWI GCNNNNNNNGC 7 cut(s) 302, 607, 722, 929, 979, 1637, 1813
BstNI CCWGG 2 cut(s) 1801, 1883
BstNSI RCATGY 4 cut(s) 280, 1155, 1791, 1997
BstSCI CCNGG 3 cut(s) 1662, 1799, 1881
BstSFI CTRYAG 1 cut(s) 1500
BstV1I GCAGC 8 cut(s) 394, 737, 916, 919, 994, 1048, 1099, 1725
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 839
BstXI CCANNNNNNTGG 1 cut(s) 1004
BstYI RGATCY 1 cut(s) 839
Bsu15I ATCGAT 1 cut(s) 1236
BsuI GTATCC 1 cut(s) 1558
BsuRI GGCC 4 cut(s) 296, 1041, 1267, 1983
BsuTUI ATCGAT 1 cut(s) 1236
BtgI CCRYGG 2 cut(s) 997, 1612
BtsCI GGATG 7 cut(s) 10, 131, 460, 625, 880, 1608, 1979
BtsI GCAGTG 2 cut(s) 435, 1838
BtsIMutI CAGTG 4 cut(s) 306, 435, 671, 1838
Cac8I GCNNGC 6 cut(s) 278, 460, 937, 1153, 1206, 1287
CaiI CAGNNNCTG 3 cut(s) 763, 1115, 1738
CciI TCATGA 2 cut(s) 103, 154
Cfr13I GGNCC 2 cut(s) 295, 1304
ClaI ATCGAT 1 cut(s) 1236
Csp6I GTAC 4 cut(s) 761, 1075, 1429, 1516
CviQI GTAC 4 cut(s) 761, 1075, 1429, 1516
DdeI CTNAG 6 cut(s) 187, 309, 463, 615, 735, 833
Eam1104I CTCTTC 3 cut(s) 801, 1368, 1690
EarI CTCTTC 3 cut(s) 801, 1368, 1690
Ecl136II GAGCTC 1 cut(s) 186
Eco130I CCWWGG 4 cut(s) 602, 997, 1559, 1612
Eco24I GRGCYC 1 cut(s) 188
Eco32I GATATC 3 cut(s) 399, 1474, 1603
Eco47I GGWCC 1 cut(s) 1304
Eco53kI GAGCTC 1 cut(s) 186
Eco57I CTGAAG 3 cut(s) 45, 266, 782
EcoICRI GAGCTC 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 1799, 1881
EcoRV GATATC 3 cut(s) 399, 1474, 1603
EcoT14I CCWWGG 4 cut(s) 602, 997, 1559, 1612
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 4 cut(s) 602, 997, 1559, 1612
Esp3I CGTCTC 1 cut(s) 1370
FalI AAGNNNNNCTT 2 cut(s) 1949, 1981
FaqI GGGAC 3 cut(s) 593, 1403, 1466
FbaI TGATCA 2 cut(s) 91, 808
Fnu4HI GCNGC 9 cut(s) 383, 441, 726, 930, 933, 983, 1062, 1113, 1739
FokI GGATG 7 cut(s) 17, 118, 467, 632, 887, 1595, 1986
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 9 cut(s) 383, 441, 726, 930, 933, 983, 1062, 1113, 1739
FspBI CTAG 6 cut(s) 332, 444, 491, 1205, 1391, 1851
GluI GCNGC 9 cut(s) 383, 441, 726, 930, 933, 983, 1062, 1113, 1739
HaeIII GGCC 4 cut(s) 296, 1041, 1267, 1983
HapII CCGG 2 cut(s) 1302, 1663
HincII GTYRAC 2 cut(s) 1497, 1945
HindII GTYRAC 2 cut(s) 1497, 1945
HindIII AAGCTT 3 cut(s) 35, 1128, 1577
HpaII CCGG 2 cut(s) 1302, 1663
HphI GGTGA 3 cut(s) 353, 569, 1013
Hpy166II GTNNAC 4 cut(s) 830, 1497, 1507, 1945
Hpy188I TCNGA 8 cut(s) 69, 91, 190, 240, 403, 736, 808, 903
Hpy8I GTNNAC 4 cut(s) 830, 1497, 1507, 1945
HpyAV CCTTC 3 cut(s) 357, 374, 1654
HpyCH4III ACNGT 6 cut(s) 290, 1501, 1546, 1556, 1570, 1659
HpyCH4V TGCA 6 cut(s) 276, 923, 935, 1404, 1640, 1969
HpyF10VI GCNNNNNNNGC 7 cut(s) 302, 607, 722, 929, 979, 1637, 1813
HpyF3I CTNAG 6 cut(s) 187, 309, 463, 615, 735, 833
Kpn2I TCCGGA 1 cut(s) 1301
Ksp22I TGATCA 2 cut(s) 91, 808
LmnI GCTCC 5 cut(s) 437, 607, 648, 699, 1628
Lsp1109I GCAGC 8 cut(s) 394, 737, 916, 919, 994, 1048, 1099, 1725
LweI GCATC 3 cut(s) 231, 445, 1272
MaeI CTAG 6 cut(s) 332, 444, 491, 1205, 1391, 1851
MaeIII GTNAC 2 cut(s) 1216, 1869
MflI RGATCY 1 cut(s) 839
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 5 cut(s) 8, 28, 107, 1334, 1458
MlyI GAGTC 2 cut(s) 575, 623
MmeI TCCRAC 2 cut(s) 449, 732
MroI TCCGGA 1 cut(s) 1301
MroXI GAANNNNTTC 2 cut(s) 29, 498
MseI TTAA 6 cut(s) 414, 816, 1124, 1523, 1623, 1902
MslI CAYNNNNRTG 3 cut(s) 102, 153, 1002
MspA1I CMGCKG 2 cut(s) 728, 1112
MspI CCGG 2 cut(s) 1302, 1663
MspR9I CCNGG 3 cut(s) 1664, 1801, 1883
MvaI CCWGG 2 cut(s) 1801, 1883
MwoI GCNNNNNNNGC 7 cut(s) 302, 607, 722, 929, 979, 1637, 1813
NciI CCSGG 1 cut(s) 1664
NcoI CCATGG 2 cut(s) 997, 1612
NheI GCTAGC 1 cut(s) 1204
NlaIV GGNNCC 7 cut(s) 528, 841, 1009, 1068, 1630, 1661, 1798
NspI RCATGY 4 cut(s) 280, 1155, 1791, 1997
PaeI GCATGC 2 cut(s) 280, 1155
PagI TCATGA 2 cut(s) 103, 154
PdmI GAANNNNTTC 2 cut(s) 29, 498
PfeI GAWTC 8 cut(s) 86, 161, 494, 731, 803, 1410, 1590, 1860
PflMI CCANNNNNTGG 1 cut(s) 1618
PfoI TCCNGGA 2 cut(s) 1662, 1799
PkrI GCNGC 9 cut(s) 384, 442, 727, 931, 934, 984, 1063, 1114, 1740
PleI GAGTC 2 cut(s) 575, 623
PpsI GAGTC 2 cut(s) 575, 623
PsiI TTATAA 1 cut(s) 1101
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 1799, 1881
PspGI CCWGG 2 cut(s) 1799, 1881
PspN4I GGNNCC 7 cut(s) 528, 841, 1009, 1068, 1630, 1661, 1798
PspPI GGNCC 2 cut(s) 295, 1304
PsrI GAACNNNNNNTAC 2 cut(s) 1499, 1531
PstNI CAGNNNCTG 3 cut(s) 763, 1115, 1738
PsuI RGATCY 1 cut(s) 839
PvuII CAGCTG 2 cut(s) 728, 1112
RsaI GTAC 4 cut(s) 762, 1076, 1430, 1517
RsaNI GTAC 4 cut(s) 761, 1075, 1429, 1516
RseI CAYNNNNRTG 3 cut(s) 102, 153, 1002
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 6 cut(s) 414, 816, 1124, 1523, 1623, 1902
SatI GCNGC 9 cut(s) 383, 441, 726, 930, 933, 983, 1062, 1113, 1739
Sau96I GGNCC 2 cut(s) 295, 1304
SchI GAGTC 2 cut(s) 575, 623
ScrFI CCNGG 3 cut(s) 1664, 1801, 1883
SduI GDGCHC 1 cut(s) 188
SfaNI GCATC 3 cut(s) 231, 445, 1272
SfcI CTRYAG 1 cut(s) 1500
SinI GGWCC 1 cut(s) 1304
SmiMI CAYNNNNRTG 3 cut(s) 102, 153, 1002
SmlI CTYRAG 1 cut(s) 968
SmoI CTYRAG 1 cut(s) 968
SphI GCATGC 2 cut(s) 280, 1155
Sse9I AATT 5 cut(s) 8, 28, 107, 1334, 1458
SsiI CCGC 3 cut(s) 441, 1064, 1387
SspI AATATT 1 cut(s) 1909
SspMI CTAG 6 cut(s) 332, 444, 491, 1205, 1391, 1851
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 3 cut(s) 1662, 1799, 1881
StyI CCWWGG 4 cut(s) 602, 997, 1559, 1612
TaaI ACNGT 6 cut(s) 290, 1501, 1546, 1556, 1570, 1659
TaqI TCGA 5 cut(s) 353, 1044, 1236, 1354, 1413
TasI AATT 5 cut(s) 8, 28, 107, 1334, 1458
TatI WGTACW 3 cut(s) 1074, 1428, 1515
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 8 cut(s) 86, 161, 494, 731, 803, 1410, 1590, 1860
Tru1I TTAA 6 cut(s) 414, 816, 1124, 1523, 1623, 1902
Tru9I TTAA 6 cut(s) 414, 816, 1124, 1523, 1623, 1902
TscAI CASTG 4 cut(s) 313, 442, 671, 1838
TseI GCWGC 8 cut(s) 382, 725, 929, 932, 982, 1061, 1112, 1738
TspRI CASTG 4 cut(s) 313, 442, 671, 1838
Van91I CCANNNNNTGG 1 cut(s) 1618
VpaK11BI GGWCC 1 cut(s) 1304
XapI RAATTY 3 cut(s) 8, 107, 1334
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 4 cut(s) 280, 1155, 1791, 1997
XmnI GAANNNNTTC 2 cut(s) 29, 498
XspI CTAG 6 cut(s) 332, 444, 491, 1205, 1391, 1851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.