Rh5BG549700

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001307
Physical Location & Seq
Reverse (-)
87310856 .. 87313314
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG549700.1

Sequence Viewer

Length: 990 bp
ATGGGTGCTTCTGAGTTTTCAAGGAAGATGGGAAATCAGAGCAGTACTCAAATGGGTACTGACCAATCTTCAAAACCCATGATTTCGTTGCCTCAAGAATCCAATCAGACCAGAAATGAGTCATCTTTTCCTGAGGGTTCTAATGGGGAAAATGGTTTGCCAAGCTATGTGGCATTGAAGTCCATAAGCAATGAGGGATTGTCTGGGTTTGAGTTGATGAATGGTTGTGATTTGTTTAATGGAAGATGGGTGAGAGATGATTCATACCCACTTTATGCTGCTGAGTCATGTCCTTACATTGATGAGTCTTTCAATTGTTTTCTCAATAGTAGGCCTGATAATGGTTATGAAAAAATCGGAGGTGCTAACCATAAATGGGTCAAAGAAGGAAACACCGCCTGGATATGGTTCAGAGATCCTTGGATAAGTACAGAAGTGCAGATGTTCTTGTCTTCAACACAGGTCACTGGTGAACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGCTATATCAACTGAATGTTAAAGAGGCGTATGGAAAAGCTATAACAACATGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTATTGTTTTCTTCCGGGGCTATTCACCTAATCACTTTAGCGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAATTCAATACGAGGCATACAAAGGAAAATATCCGGCAAAGATGAGAATACTGGACTCAGTAATTAGGGAAATGAAGACTCCAATCTTTTATCTGAATGTTACAAAAATGACTGATTTTCGGCGGGATGCTCATCCATCCATTTACAGAAAGCAGAATTTGACGGAGGAGGAGAGACAGCTGTCTTTGCGATCCCAGGATTGCAGTCATTGGTGCCTCCCTGGTGTTCGTGATACATGGAACGAGCTTCTATGTGCTCATCTCCTTAGATATATCCAGCATCGGAGGAGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

329

Amino Acids

37.94

Weight (kDa)

8.86

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 75 - 118 1.2e-16 PMR5 N terminal Domain
PC-Esterase PF13839 171 - 317 1.9e-50 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 906
AciI CCGC 3 cut(s) 396, 648, 817
AclWI GGATC 2 cut(s) 410, 879
AcsI RAATTY 1 cut(s) 850
AfaI GTAC 3 cut(s) 46, 58, 430
AfiI CCNNNNNNNGG 3 cut(s) 341, 376, 405
AgsI TTSAA 6 cut(s) 21, 72, 178, 313, 456, 701
AjnI CCWGG 3 cut(s) 398, 888, 913
AluBI AGCT 4 cut(s) 165, 557, 874, 940
AluI AGCT 4 cut(s) 165, 557, 874, 940
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 2 cut(s) 862, 976
AlwI GGATC 2 cut(s) 410, 879
AoxI GGCC 2 cut(s) 332, 570
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 850
AspS9I GGNCC 1 cut(s) 570
AsuC2I CCSGG 1 cut(s) 623
AsuHPI GGTGA 3 cut(s) 262, 482, 624
AxyI CCTNAGG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 906
BarI GAAGNNNNNNTAC 2 cut(s) 646, 678
BbsI GAAGAC 2 cut(s) 444, 776
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 1 cut(s) 265
BccI CCATC 5 cut(s) 22, 240, 570, 651, 838
BciT130I CCWGG 3 cut(s) 400, 890, 915
BcnI CCSGG 1 cut(s) 623
BcoDI GTCTC 2 cut(s) 862, 976
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 46
Bme1390I CCNGG 4 cut(s) 400, 623, 890, 915
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 1 cut(s) 908
BmrFI CCNGG 4 cut(s) 400, 623, 890, 915
BmsI GCATC 3 cut(s) 574, 811, 982
BoxI GACNNNNGTC 1 cut(s) 874
BpiI GAAGAC 2 cut(s) 444, 776
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpmI CTGGAG 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 825
BsaI GGTCTC 1 cut(s) 976
BsaJI CCNNGG 4 cut(s) 419, 622, 888, 913
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 376, 405
Bse1I ACTGG 3 cut(s) 472, 670, 750
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 825
BseBI CCWGG 3 cut(s) 400, 890, 915
BseDI CCNNGG 4 cut(s) 419, 622, 888, 913
BseGI GGATG 4 cut(s) 589, 826, 826, 830
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 3 cut(s) 341, 376, 405
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 3 cut(s) 123, 273, 765
BseNI ACTGG 3 cut(s) 472, 670, 750
BseRI GAGGAG 2 cut(s) 875, 878
BseXI GCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 458
BshFI GGCC 2 cut(s) 334, 572
BshNI GGYRCC 1 cut(s) 906
BsiHKAI GWGCWC 1 cut(s) 952
BsiSI CCGG 2 cut(s) 622, 728
BslI CCNNNNNNNGG 3 cut(s) 341, 376, 405
BsmAI GTCTC 2 cut(s) 862, 976
BsnI GGCC 2 cut(s) 334, 572
Bso31I GGTCTC 1 cut(s) 976
Bsp1286I GDGCHC 1 cut(s) 952
Bsp143I GATC 2 cut(s) 415, 884
BspACI CCGC 3 cut(s) 396, 648, 817
BspANI GGCC 2 cut(s) 334, 572
BspCNI CTCAG 4 cut(s) 4, 124, 274, 764
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 908
BspPI GGATC 2 cut(s) 410, 879
BspT107I GGYRCC 1 cut(s) 906
BspTNI GGTCTC 1 cut(s) 976
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 3 cut(s) 472, 670, 750
BssECI CCNNGG 4 cut(s) 419, 622, 888, 913
BssMI GATC 2 cut(s) 415, 884
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 3 cut(s) 400, 890, 915
BstDEI CTNAG 5 cut(s) 12, 132, 282, 751, 959
BstF5I GGATG 4 cut(s) 589, 826, 826, 830
BstKTI GATC 2 cut(s) 418, 887
BstMAI GTCTC 2 cut(s) 862, 976
BstMBI GATC 2 cut(s) 415, 884
BstMWI GCNNNNNNNGC 1 cut(s) 880
BstNI CCWGG 3 cut(s) 400, 890, 915
BstPAI GACNNNNGTC 1 cut(s) 874
BstSCI CCNGG 4 cut(s) 398, 621, 888, 913
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 2 cut(s) 444, 776
BstX2I RGATCY 1 cut(s) 415
BstXI CCANNNNNNTGG 1 cut(s) 580
BstYI RGATCY 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 334, 572
BtsCI GGATG 4 cut(s) 589, 826, 826, 830
BtsIMutI CAGTG 1 cut(s) 465
CciI TCATGA 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 570
Csp6I GTAC 3 cut(s) 45, 57, 429
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviAII CATG 6 cut(s) 79, 288, 478, 567, 680, 930
CviJI RGCY 9 cut(s) 165, 334, 557, 572, 580, 627, 694, 874, 940
CviKI_1 RGCY 9 cut(s) 165, 334, 557, 572, 580, 627, 694, 874, 940
CviQI GTAC 3 cut(s) 45, 57, 429
DdeI CTNAG 5 cut(s) 12, 132, 282, 751, 959
DpnI GATC 2 cut(s) 417, 886
DpnII GATC 2 cut(s) 415, 884
Eco130I CCWWGG 1 cut(s) 419
Eco147I AGGCCT 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 976
Eco81I CCTNAGG 1 cut(s) 132
EcoRII CCWGG 3 cut(s) 398, 888, 913
EcoT14I CCWWGG 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 6 cut(s) 82, 291, 481, 570, 683, 933
FatI CATG 6 cut(s) 78, 287, 477, 566, 679, 929
FauI CCCGC 1 cut(s) 810
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 4 cut(s) 596, 813, 817, 833
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 687
HaeIII GGCC 2 cut(s) 334, 572
HapII CCGG 2 cut(s) 622, 728
Hin1II CATG 6 cut(s) 82, 291, 481, 570, 683, 933
HinfI GANTC 7 cut(s) 98, 119, 260, 284, 305, 749, 772
HpaII CCGG 2 cut(s) 622, 728
HphI GGTGA 3 cut(s) 262, 482, 624
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 8 cut(s) 13, 39, 108, 359, 413, 687, 789, 978
Hpy188III TCNNGA 7 cut(s) 95, 131, 478, 491, 511, 599, 923
Hpy8I GTNNAC 1 cut(s) 473
HpyAV CCTTC 1 cut(s) 380
HpyCH4V TGCA 2 cut(s) 439, 897
HpyF10VI GCNNNNNNNGC 1 cut(s) 880
HpyF3I CTNAG 5 cut(s) 12, 132, 282, 751, 959
Hsp92II CATG 6 cut(s) 82, 291, 481, 570, 683, 933
Kzo9I GATC 2 cut(s) 415, 884
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 3 cut(s) 574, 811, 982
MaeIII GTNAC 3 cut(s) 463, 502, 793
MalI GATC 2 cut(s) 417, 886
MboI GATC 2 cut(s) 415, 884
MboII GAAGA 7 cut(s) 37, 60, 255, 444, 610, 666, 781
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 952
MluCI AATT 4 cut(s) 313, 696, 756, 850
MlyI GAGTC 5 cut(s) 128, 293, 314, 743, 766
MmeI TCCRAC 1 cut(s) 665
MseI TTAA 2 cut(s) 237, 537
MspA1I CMGCKG 1 cut(s) 874
MspI CCGG 2 cut(s) 622, 728
MspR9I CCNGG 4 cut(s) 400, 623, 890, 915
MunI CAATTG 1 cut(s) 313
MvaI CCWGG 3 cut(s) 400, 890, 915
MwoI GCNNNNNNNGC 1 cut(s) 880
NciI CCSGG 1 cut(s) 623
NdeII GATC 2 cut(s) 415, 884
NlaIII CATG 6 cut(s) 82, 291, 481, 570, 683, 933
NlaIV GGNNCC 1 cut(s) 908
NmuCI GTSAC 1 cut(s) 463
PagI TCATGA 1 cut(s) 477
PceI AGGCCT 1 cut(s) 334
PfeI GAWTC 2 cut(s) 98, 260
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 5 cut(s) 127, 292, 313, 743, 766
PpsI GAGTC 5 cut(s) 127, 292, 313, 743, 766
PshAI GACNNNNGTC 1 cut(s) 874
Psp6I CCWGG 3 cut(s) 398, 888, 913
PspGI CCWGG 3 cut(s) 398, 888, 913
PspN4I GGNNCC 1 cut(s) 908
PspPI GGNCC 1 cut(s) 570
PsuI RGATCY 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 874
RsaI GTAC 3 cut(s) 46, 58, 430
RsaNI GTAC 3 cut(s) 45, 57, 429
SaqAI TTAA 2 cut(s) 237, 537
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 2 cut(s) 415, 884
Sau96I GGNCC 1 cut(s) 570
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 5 cut(s) 128, 293, 314, 743, 766
ScrFI CCNGG 4 cut(s) 400, 623, 890, 915
SduI GDGCHC 1 cut(s) 952
SetI ASST 8 cut(s) 167, 364, 465, 559, 637, 673, 876, 942
SfaNI GCATC 3 cut(s) 574, 811, 982
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 4 cut(s) 313, 696, 756, 850
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 3 cut(s) 396, 648, 817
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 4 cut(s) 398, 621, 888, 913
StyI CCWWGG 1 cut(s) 419
TasI AATT 4 cut(s) 313, 696, 756, 850
TatI WGTACW 2 cut(s) 44, 428
TfiI GAWTC 2 cut(s) 98, 260
Tru1I TTAA 2 cut(s) 237, 537
Tru9I TTAA 2 cut(s) 237, 537
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 4 cut(s) 233, 252, 363, 782
TspGWI ACGGA 1 cut(s) 872
TspRI CASTG 1 cut(s) 472
XapI RAATTY 1 cut(s) 850
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.