Rmu_ssc0000432.1_g000080

Protein trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0001307
Physical Location & Seq
Forward (+)
282720 .. 285343
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000432.1_g000080.1.cds

Sequence Viewer

Length: 1608 bp
atggcagattcctcaccccaaactacaaagcaccactcacccactaaagcagagcccaaggcttctctttcttccatcttcttcacttcaagaaaagcctccgcctttgcttatggaatcgcctttgctctcattgccttcacttccttctgggttttcaacccatctggctactctttcccttttagcgtcaacaccatcttctactcttctccttccaactcttctcaggaagttactaaatccccaaagatcgaatctttaccacatttgggcagcaatggaagtttgaacagtgaaatgggtgcttctcagttttccgggaagatgggaaatcagagcagtactcaaatgggtactgatcaatcttcaaaacccgtgatttctttgccccaagaatccaatcacaccagaaatgagtcttctttttctgaaggttctagtggggaaaatggtttgccaagctatgtggcattgaagtccataagcaatgaggggttgtctgggtttgagttgattaatggttgtgatttgtttgatggaagatgggtgagagatgattcatacccactttatgctgctgggtcttgtccttacattgatgaatctttcaattgttttctcaatagtaggcctgataatggttatgaaaagtatagatggcaacccaaaaactgcaatctcccaaggatgaatggaaggaacatgttggaattattgagaggaaagcgtctagtttttgttggtgattctctcaacaggaatatgtgggagtctttggtttgtcttcttaggaattcagtggatgataagagcagagtttttgaagcttctggcaggagcgaatttcgtacagagggcgcctatttttttgtattcaaggattacaattgttcactggagtttgttcaatcaccatttctagttcaagaatcggaggtgctaaccacaaatgggtcaaagaaggaaacactgcgcctggatatgattcagagatccttggataagtacaaaagtgcagatgttctcgtcttcaacacaggtcactggtggactcatgagaaaacttccagagggcagggttactatcaagagggtgaatatatctatagtcaattgaatgtcaaagaggcgtatggaaaagctataacgacatgggccagatggctggatgctaatataaatcctgaaaaaactgttgttttcttccggggctattcgcccaatcactttagcatcttcatgtttgctttaccatttcatagtggtggaagatggaatactggaggtcaatgtcatggtcggacagagccagttcaatacgaggcatacaaaggaaaatatcctgcaaagatgagaatactggactcagtaatcagggaaatgaagattccaatcttttatctgaatgttacaaaaatgactgattttcggagggatgctcacccatccatttacagaaagcagaatttgacagaggaggagagacagttgtctttgagatcccaggattgcagtcattggtgcctccctggtgttcctgatacatggaacgagcttctatatgctcatctccttacatataccctgcagcggaggagaccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

535

Amino Acids

60.97

Weight (kDa)

8.65

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 860, 1524
AciI CCGC 2 cut(s) 102, 1594
AclWI GGATC 2 cut(s) 990, 1497
AcsI RAATTY 3 cut(s) 796, 845, 1468
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 861
AfaI GTAC 4 cut(s) 346, 358, 853, 1010
AfiI CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1593
AflIII ACRYGT 1 cut(s) 705
AjnI CCWGG 3 cut(s) 978, 1506, 1531
AluBI AGCT 4 cut(s) 465, 830, 1145, 1558
AluI AGCT 4 cut(s) 465, 830, 1145, 1558
Alw26I GTCTC 2 cut(s) 1480, 1594
AlwI GGATC 2 cut(s) 990, 1497
AoxI GGCC 2 cut(s) 632, 1158
ApeKI GCWGC 3 cut(s) 276, 578, 1591
ApoI RAATTY 3 cut(s) 796, 845, 1468
AseI ATTAAT 1 cut(s) 519
AspLEI GCGC 2 cut(s) 863, 978
AspS9I GGNCC 1 cut(s) 1158
AsuC2I CCSGG 2 cut(s) 322, 1211
AsuHPI GGTGA 7 cut(s) 6, 30, 562, 758, 906, 1109, 1436
BanI GGYRCC 2 cut(s) 860, 1524
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 2 cut(s) 1264, 1296
BbsI GAAGAC 3 cut(s) 414, 779, 1024
BbvI GCAGC 3 cut(s) 288, 565, 1603
BciT130I CCWGG 3 cut(s) 980, 1508, 1533
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 2 cut(s) 322, 1211
BcoDI GTCTC 2 cut(s) 1480, 1594
BfaI CTAG 3 cut(s) 441, 734, 923
BfmI CTRYAG 2 cut(s) 1108, 1589
BfoI RGCGCY 1 cut(s) 864
BisI GCNGC 3 cut(s) 277, 579, 1592
BlsI GCNGC 3 cut(s) 278, 580, 1593
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 5 cut(s) 322, 980, 1211, 1508, 1533
BmgT120I GGNCC 1 cut(s) 1158
BmiI GGNNCC 2 cut(s) 862, 1526
BmrFI CCNGG 5 cut(s) 322, 980, 1211, 1508, 1533
BmsI GCATC 3 cut(s) 1162, 1245, 1429
BoxI GACNNNNGTC 1 cut(s) 1492
BpiI GAAGAC 3 cut(s) 414, 779, 1024
BplI GAGNNNNNCTC 4 cut(s) 331, 363, 1426, 1458
BpmI CTGGAG 2 cut(s) 920, 1305
BpuMI CCSGG 2 cut(s) 322, 1211
BsaBI GATNNNNATC 1 cut(s) 1394
BsaHI GRCGYC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 1594
BsaJI CCNNGG 6 cut(s) 57, 686, 999, 1210, 1506, 1531
BsaXI ACNNNNNCTCC 2 cut(s) 1475, 1505
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1593
Bse1I ACTGG 5 cut(s) 903, 1052, 1288, 1313, 1368
Bse3DI GCAATG 3 cut(s) 132, 286, 496
Bse8I GATNNNNATC 1 cut(s) 1394
BseBI CCWGG 3 cut(s) 980, 1508, 1533
BseDI CCNNGG 6 cut(s) 57, 686, 999, 1210, 1506, 1531
BseGI GGATG 5 cut(s) 696, 811, 1177, 1444, 1448
BseJI GATNNNNATC 1 cut(s) 1394
BseLI CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1593
BseMI GCAATG 3 cut(s) 132, 286, 496
BseMII CTCAG 3 cut(s) 242, 326, 1383
BseNI ACTGG 5 cut(s) 903, 1052, 1288, 1313, 1368
BseRI GAGGAG 2 cut(s) 1493, 1496
BseXI GCAGC 3 cut(s) 288, 565, 1603
BseYI CCCAGC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 1038
BshFI GGCC 2 cut(s) 634, 1160
BshNI GGYRCC 2 cut(s) 860, 1524
BsiSI CCGG 2 cut(s) 321, 1210
BslI CCNNNNNNNGG 4 cut(s) 272, 641, 954, 1593
BsmAI GTCTC 2 cut(s) 1480, 1594
BsnI GGCC 2 cut(s) 634, 1160
Bso31I GGTCTC 1 cut(s) 1594
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 4 cut(s) 252, 361, 995, 1502
BspACI CCGC 2 cut(s) 102, 1594
BspANI GGCC 2 cut(s) 634, 1160
BspCNI CTCAG 3 cut(s) 241, 325, 1382
BspHI TCATGA 1 cut(s) 1057
BspLI GGNNCC 2 cut(s) 862, 1526
BspMAI CTGCAG 1 cut(s) 1593
BspPI GGATC 2 cut(s) 990, 1497
BspT107I GGYRCC 2 cut(s) 860, 1524
BspTNI GGTCTC 1 cut(s) 1594
BsrDI GCAATG 3 cut(s) 132, 286, 496
BsrI ACTGG 5 cut(s) 903, 1052, 1288, 1313, 1368
BssECI CCNNGG 6 cut(s) 57, 686, 999, 1210, 1506, 1531
BssMI GATC 4 cut(s) 252, 361, 995, 1502
BssNI GRCGYC 1 cut(s) 861
BssT1I CCWWGG 3 cut(s) 57, 686, 999
Bst2UI CCWGG 3 cut(s) 980, 1508, 1533
Bst4CI ACNGT 3 cut(s) 296, 1198, 1491
Bst6I CTCTTC 2 cut(s) 214, 229
BstACI GRCGYC 1 cut(s) 861
BstDEI CTNAG 4 cut(s) 228, 312, 791, 1369
BstF5I GGATG 5 cut(s) 696, 811, 1177, 1444, 1448
BstH2I RGCGCY 1 cut(s) 864
BstHHI GCGC 2 cut(s) 863, 978
BstKTI GATC 4 cut(s) 255, 364, 998, 1505
BstMAI GTCTC 2 cut(s) 1480, 1594
BstMBI GATC 4 cut(s) 252, 361, 995, 1502
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 3 cut(s) 980, 1508, 1533
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 1492
BstSCI CCNGG 5 cut(s) 320, 978, 1209, 1506, 1531
BstSFI CTRYAG 2 cut(s) 1108, 1589
BstV1I GCAGC 3 cut(s) 288, 565, 1603
BstV2I GAAGAC 3 cut(s) 414, 779, 1024
BstX2I RGATCY 2 cut(s) 995, 1502
BstXI CCANNNNNNTGG 1 cut(s) 1168
BstYI RGATCY 2 cut(s) 995, 1502
BsuRI GGCC 2 cut(s) 634, 1160
BtsCI GGATG 5 cut(s) 696, 811, 1177, 1444, 1448
BtsI GCAGTG 1 cut(s) 971
BtsIMutI CAGTG 5 cut(s) 301, 807, 896, 971, 1045
CciI TCATGA 1 cut(s) 1057
CfoI GCGC 2 cut(s) 863, 978
Cfr13I GGNCC 1 cut(s) 1158
CseI GACGC 2 cut(s) 178, 719
Csp6I GTAC 4 cut(s) 345, 357, 852, 1009
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CviAII CATG 6 cut(s) 706, 1058, 1155, 1243, 1298, 1548
CviQI GTAC 4 cut(s) 345, 357, 852, 1009
DdeI CTNAG 4 cut(s) 228, 312, 791, 1369
DinI GGCGCC 1 cut(s) 862
DpnI GATC 4 cut(s) 254, 363, 997, 1504
DpnII GATC 4 cut(s) 252, 361, 995, 1502
Eam1104I CTCTTC 2 cut(s) 214, 229
EarI CTCTTC 2 cut(s) 214, 229
EciI GGCGGA 1 cut(s) 91
Eco130I CCWWGG 3 cut(s) 57, 686, 999
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 1594
Eco57I CTGAAG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 3 cut(s) 978, 1506, 1531
EcoT14I CCWWGG 3 cut(s) 57, 686, 999
EcoT38I GRGCYC 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 862
EheI GGCGCC 1 cut(s) 862
ErhI CCWWGG 3 cut(s) 57, 686, 999
FaeI CATG 6 cut(s) 709, 1061, 1158, 1246, 1301, 1551
FatI CATG 6 cut(s) 705, 1057, 1154, 1242, 1297, 1547
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 277, 579, 1592
FokI GGATG 5 cut(s) 703, 818, 1184, 1435, 1451
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 277, 579, 1592
FspBI CTAG 3 cut(s) 441, 734, 923
GlaI GCGC 2 cut(s) 862, 977
GluI GCNGC 3 cut(s) 277, 579, 1592
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 2 cut(s) 920, 1305
HaeII RGCGCY 1 cut(s) 864
HaeIII GGCC 2 cut(s) 634, 1160
HapII CCGG 2 cut(s) 321, 1210
HgaI GACGC 2 cut(s) 178, 719
HhaI GCGC 2 cut(s) 863, 978
Hin1I GRCGYC 1 cut(s) 861
Hin1II CATG 6 cut(s) 709, 1061, 1158, 1246, 1301, 1551
Hin6I GCGC 2 cut(s) 861, 976
HinP1I GCGC 2 cut(s) 861, 976
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 828
HpaII CCGG 2 cut(s) 321, 1210
HphI GGTGA 7 cut(s) 6, 30, 562, 758, 906, 1109, 1436
Hpy166II GTNNAC 3 cut(s) 193, 896, 1053
Hpy188I TCNGA 7 cut(s) 339, 433, 937, 993, 1305, 1407, 1434
Hpy188III TCNNGA 8 cut(s) 90, 230, 929, 1058, 1071, 1091, 1187, 1541
Hpy8I GTNNAC 3 cut(s) 193, 896, 1053
HpyAV CCTTC 6 cut(s) 148, 157, 225, 428, 693, 958
HpyCH4III ACNGT 3 cut(s) 296, 1198, 1491
HpyCH4V TGCA 5 cut(s) 678, 1019, 1349, 1515, 1591
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 4 cut(s) 228, 312, 791, 1369
Hsp92I GRCGYC 1 cut(s) 861
Hsp92II CATG 6 cut(s) 709, 1061, 1158, 1246, 1301, 1551
HspAI GCGC 2 cut(s) 861, 976
KasI GGCGCC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 4 cut(s) 252, 361, 995, 1502
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 3 cut(s) 288, 565, 1603
LweI GCATC 3 cut(s) 1162, 1245, 1429
MaeI CTAG 3 cut(s) 441, 734, 923
MaeIII GTNAC 4 cut(s) 235, 1043, 1082, 1411
MalI GATC 4 cut(s) 254, 363, 997, 1504
MboI GATC 4 cut(s) 252, 361, 995, 1502
MfeI CAATTG 3 cut(s) 613, 889, 1115
MflI RGATCY 2 cut(s) 995, 1502
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 7 cut(s) 613, 713, 796, 845, 889, 1115, 1468
Mly113I GGCGCC 1 cut(s) 861
MlyI GAGTC 4 cut(s) 428, 782, 1048, 1361
MmeI TCCRAC 3 cut(s) 243, 690, 1283
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 2 cut(s) 1241, 1266
MspA1I CMGCKG 1 cut(s) 1594
MspI CCGG 2 cut(s) 321, 1210
MspR9I CCNGG 5 cut(s) 322, 980, 1211, 1508, 1533
MunI CAATTG 3 cut(s) 613, 889, 1115
MvaI CCWGG 3 cut(s) 980, 1508, 1533
MwoI GCNNNNNNNGC 1 cut(s) 134
NarI GGCGCC 1 cut(s) 861
NciI CCSGG 2 cut(s) 322, 1211
NdeII GATC 4 cut(s) 252, 361, 995, 1502
NlaIII CATG 6 cut(s) 709, 1061, 1158, 1246, 1301, 1551
NlaIV GGNNCC 2 cut(s) 862, 1526
NmuCI GTSAC 1 cut(s) 1043
NspI RCATGY 1 cut(s) 709
PagI TCATGA 1 cut(s) 1057
PceI AGGCCT 1 cut(s) 634
PciI ACATGT 1 cut(s) 705
PfoI TCCNGGA 1 cut(s) 320
PkrI GCNGC 3 cut(s) 278, 580, 1593
PleI GAGTC 4 cut(s) 427, 781, 1048, 1361
PluTI GGCGCC 1 cut(s) 864
PpsI GAGTC 4 cut(s) 427, 781, 1048, 1361
PscI ACATGT 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 1492
PshBI ATTAAT 1 cut(s) 519
Psp6I CCWGG 3 cut(s) 978, 1506, 1531
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 3 cut(s) 978, 1506, 1531
PspN4I GGNNCC 2 cut(s) 862, 1526
PspPI GGNCC 1 cut(s) 1158
PstI CTGCAG 1 cut(s) 1593
PsuI RGATCY 2 cut(s) 995, 1502
RsaI GTAC 4 cut(s) 346, 358, 853, 1010
RsaNI GTAC 4 cut(s) 345, 357, 852, 1009
RseI CAYNNNNRTG 2 cut(s) 1241, 1266
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 3 cut(s) 277, 579, 1592
Sau3AI GATC 4 cut(s) 252, 361, 995, 1502
Sau96I GGNCC 1 cut(s) 1158
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 4 cut(s) 428, 782, 1048, 1361
ScrFI CCNGG 5 cut(s) 322, 980, 1211, 1508, 1533
SduI GDGCHC 1 cut(s) 57
SetI ASST 8 cut(s) 439, 467, 832, 942, 1045, 1147, 1291, 1560
SfaNI GCATC 3 cut(s) 1162, 1245, 1429
SfcI CTRYAG 2 cut(s) 1108, 1589
SfoI GGCGCC 1 cut(s) 862
SmiMI CAYNNNNRTG 2 cut(s) 1241, 1266
Sse9I AATT 7 cut(s) 613, 713, 796, 845, 889, 1115, 1468
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 2 cut(s) 102, 1594
SspDI GGCGCC 1 cut(s) 860
SspMI CTAG 3 cut(s) 441, 734, 923
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 5 cut(s) 320, 978, 1209, 1506, 1531
StyI CCWWGG 3 cut(s) 57, 686, 999
TaaI ACNGT 3 cut(s) 296, 1198, 1491
TaqI TCGA 1 cut(s) 255
TasI AATT 7 cut(s) 613, 713, 796, 845, 889, 1115, 1468
TatI WGTACW 2 cut(s) 344, 1008
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 5 cut(s) 301, 807, 903, 978, 1052
TseFI GTSAC 1 cut(s) 1043
TseI GCWGC 3 cut(s) 276, 578, 1591
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 7 cut(s) 552, 618, 663, 707, 1231, 1250, 1400
TspRI CASTG 5 cut(s) 301, 807, 903, 978, 1052
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 3 cut(s) 796, 845, 1468
XceI RCATGY 1 cut(s) 709
XspI CTAG 3 cut(s) 441, 734, 923
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.