Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001307

Physical Location & Seq

Genomic Coordinates Reverse (-)

87322567 .. 87324525

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG549900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCAACCCAAAAACTGCAATCTCCCAAGGATGAATGGAAGGAACATGTTGGAATTATTGAGAGGAAAGCGTCTAGTTTTTGTTGGAGCGAATTTCGTACAGAGGGCGCCTACTTTTTTGTATTCAAGGATTACAATTGTTCAGTGGAGTTTGTTCAATCACCATTTCTAGTTCAAGAATCGGAGGTGCTGACCACAAATGGGTCAAAGAAGGAAACACTGCGCCTGGATATGATTCAGAAATCCTTGGATAAGTACAAAAGTGCAGATGTTCTCGTCTTCAACACAGGTCACTGGTGGACTCATGAGAAAACTTCCAGAGGGCAGGGTTACTATCAAGAGGGTGACTATATCTATAGTCAATTGAATGTCAAAGAGGCGTATGGTAAAGCTATAACAACACGGGCCAGATGGCTGGATGCTAATATAAATCCTGAAAAAACTGTTGTTTTCTTCCGGGGCTATTCGCCCAATCACTTTAGTGGTGGAAGATGGAATACTGGAGGTCAATGTCATGGTCGGACAGAGCCAATTCAATATGAGGGATACAAAGGAAAATATCCTGCAAAGATGAGAATGCTGGACTCAGTAATCAGGGAAATGAAGATTCCAATCTTTTATCTGAATGTTACAAAAATGACAGATTTTCGGAGGGATGCTCACCCATCCATTTACAGAAAGCAGAATTTGACAGAGGAGGAGAGACAGTTGTCTTTGAGATCCCAGGATTGCAGTCATTGGTGCCTTCCTGGTGTTCCTGATACATGGAACGAGCTTCTATATGCTCATCTCCTTACATATACCCAGCAGCGGAGGAGACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

274

Amino Acids

32.28

Weight (kDa)

9.02

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	30 - 262	5.5e-77	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49340
fragaria_vesca	FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44450 FvH4_3g44460 FvH4_3g44460 FvH4_3g44460
malus_domestica	MD03G1012500.v1.1 MD03G1012600.v1.1 MD03G1013000.v1.1 MD03G1013100.v1.1 MD03G1013400.v1.1 MD03G1013500.v1.1 MD11G1015200.v1.1
prunus_persica	Prupe.6G013100_v2.0.a1 Prupe.6G013300_v2.0.a1
pyrus_communis	pycom02g13780 pycom03g01130
rosa_chinensis	RchiOBHm_Chr5g0081011 RchiOBHm_Chr5g0081071 RchiOBHm_Chr5g0081121 RchiOBHm_Chr5g0081131
rosa_laevigata	RLG00000036911 RLG00000036913
rosa_multiflora	Rmu_sc0006274.1_g000005 Rmu_ssc0000432.1_g000079 Rmu_ssc0000432.1_g000080 Rmu_ssc0000432.1_g000113 Rmu_ssc0000432.1_g000119
rosa_roxburghii	Rroxscaffold_1G00002310 Rroxscaffold_1G00002320 Rroxscaffold_1G00002470
rosa_rugosa	Rorug05G0473500 Rorug05G0473600
rosa_samantha	Rh5AG525800 Rh5AG526000 Rh5AG526100 Rh5BG549700 Rh5BG549900 Rh5BG550300 Rh5BG550400 Rh5CG572600 Rh5CG573200 Rh5CG573300 Rh5DG560000 Rh5DG560100
rosa_wichuraiana	Rw0G002560 Rw0G002570 Rw0G012050 Rw5G048870 Rw5G048880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 741
AciI	CCGC	1 cut(s)	811
AclWI	GGATC	1 cut(s)	714
AcsI	RAATTY	2 cut(s)	92, 685
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	2 cut(s)	100, 257
AfiI	CCNNNNNNNGG	2 cut(s)	201, 810
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	6 cut(s)	127, 158, 176, 283, 367, 536
AjnI	CCWGG	3 cut(s)	225, 723, 748
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	2 cut(s)	392, 775
AluI	AGCT	2 cut(s)	392, 775
Alw26I	GTCTC	2 cut(s)	697, 811
AlwI	GGATC	1 cut(s)	714
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	808
ApoI	RAATTY	2 cut(s)	92, 685
AspLEI	GCGC	2 cut(s)	110, 225
AspS9I	GGNCC	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	3 cut(s)	153, 356, 653
BanI	GGYRCC	2 cut(s)	107, 741
BarI	GAAGNNNNNNTAC	2 cut(s)	481, 513
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	820
BccI	CCATC	3 cut(s)	405, 486, 673
BciT130I	CCWGG	3 cut(s)	227, 725, 750
BciVI	GTATCC	1 cut(s)	539
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	2 cut(s)	697, 811
BfaI	CTAG	2 cut(s)	75, 170
BfmI	CTRYAG	1 cut(s)	355
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	539
BisI	GCNGC	1 cut(s)	809
BlsI	GCNGC	1 cut(s)	810
Bme1390I	CCNGG	4 cut(s)	227, 458, 725, 750
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	2 cut(s)	109, 743
BmrFI	CCNGG	4 cut(s)	227, 458, 725, 750
BmsI	GCATC	2 cut(s)	409, 646
BoxI	GACNNNNGTC	1 cut(s)	709
BpiI	GAAGAC	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	643, 675
BpmI	CTGGAG	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	458
BsaBI	GATNNNNATC	1 cut(s)	611
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	811
BsaJI	CCNNGG	4 cut(s)	27, 246, 457, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 810
Bse1I	ACTGG	2 cut(s)	299, 505
Bse8I	GATNNNNATC	1 cut(s)	611
BseBI	CCWGG	3 cut(s)	227, 725, 750
BseDI	CCNNGG	4 cut(s)	27, 246, 457, 723
BseGI	GGATG	4 cut(s)	37, 424, 661, 665
BseJI	GATNNNNATC	1 cut(s)	611
BseLI	CCNNNNNNNGG	2 cut(s)	201, 810
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	2 cut(s)	299, 505
BseRI	GAGGAG	2 cut(s)	710, 713
BseXI	GCAGC	1 cut(s)	820
BseYI	CCCAGC	1 cut(s)	804
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	2 cut(s)	107, 741
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	201, 810
BsmAI	GTCTC	2 cut(s)	697, 811
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	407
Bso31I	GGTCTC	1 cut(s)	811
Bsp143I	GATC	1 cut(s)	719
BspACI	CCGC	1 cut(s)	811
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	599
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	109, 743
BspPI	GGATC	1 cut(s)	714
BspT107I	GGYRCC	2 cut(s)	107, 741
BspTNI	GGTCTC	1 cut(s)	811
BsrI	ACTGG	2 cut(s)	299, 505
BssECI	CCNNGG	4 cut(s)	27, 246, 457, 723
BssMI	GATC	1 cut(s)	719
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	27, 246
Bst2UI	CCWGG	3 cut(s)	227, 725, 750
Bst4CI	ACNGT	2 cut(s)	445, 708
BstACI	GRCGYC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	586
BstF5I	GGATG	4 cut(s)	37, 424, 661, 665
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 225
BstKTI	GATC	1 cut(s)	722
BstMAI	GTCTC	2 cut(s)	697, 811
BstMBI	GATC	1 cut(s)	719
BstNI	CCWGG	3 cut(s)	227, 725, 750
BstNSI	RCATGY	1 cut(s)	50
BstPAI	GACNNNNGTC	1 cut(s)	709
BstSCI	CCNGG	4 cut(s)	225, 456, 723, 748
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	820
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	719
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	719
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	4 cut(s)	37, 424, 661, 665
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	3 cut(s)	150, 218, 292
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	2 cut(s)	110, 225
Cfr13I	GGNCC	1 cut(s)	405
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	99, 256
CviAII	CATG	4 cut(s)	47, 305, 515, 765
CviJI	RGCY	6 cut(s)	392, 407, 415, 462, 529, 775
CviKI_1	RGCY	6 cut(s)	392, 407, 415, 462, 529, 775
CviQI	GTAC	2 cut(s)	99, 256
DdeI	CTNAG	1 cut(s)	586
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	1 cut(s)	721
DpnII	GATC	1 cut(s)	719
Eco130I	CCWWGG	2 cut(s)	27, 246
Eco31I	GGTCTC	1 cut(s)	811
EcoRII	CCWGG	3 cut(s)	225, 723, 748
EcoT14I	CCWWGG	2 cut(s)	27, 246
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	2 cut(s)	27, 246
FaeI	CATG	4 cut(s)	50, 308, 518, 768
FatI	CATG	4 cut(s)	46, 304, 514, 764
Fnu4HI	GCNGC	1 cut(s)	809
FokI	GGATG	4 cut(s)	44, 431, 652, 668
Fsp4HI	GCNGC	1 cut(s)	809
FspBI	CTAG	2 cut(s)	75, 170
GlaI	GCGC	2 cut(s)	109, 224
GluI	GCNGC	1 cut(s)	809
GsaI	CCCAGC	1 cut(s)	808
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	457
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	2 cut(s)	110, 225
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	50, 308, 518, 768
Hin6I	GCGC	2 cut(s)	108, 223
HinP1I	GCGC	2 cut(s)	108, 223
HinfI	GANTC	5 cut(s)	179, 235, 301, 584, 607
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	3 cut(s)	153, 356, 653
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	5 cut(s)	184, 240, 522, 624, 651
Hpy188III	TCNNGA	6 cut(s)	176, 305, 318, 338, 434, 758
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	3 cut(s)	34, 205, 755
HpyCH4III	ACNGT	2 cut(s)	445, 708
HpyCH4V	TGCA	4 cut(s)	19, 266, 566, 732
HpyF3I	CTNAG	1 cut(s)	586
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	50, 308, 518, 768
HspAI	GCGC	2 cut(s)	108, 223
KasI	GGCGCC	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	719
LmnI	GCTCC	1 cut(s)	87
Lsp1109I	GCAGC	1 cut(s)	820
LweI	GCATC	2 cut(s)	409, 646
MaeI	CTAG	2 cut(s)	75, 170
MaeIII	GTNAC	4 cut(s)	290, 329, 344, 628
MalI	GATC	1 cut(s)	721
MboI	GATC	1 cut(s)	719
MboII	GAAGA	4 cut(s)	271, 445, 501, 616
MfeI	CAATTG	2 cut(s)	136, 362
MflI	RGATCY	1 cut(s)	719
MluCI	AATT	6 cut(s)	54, 92, 136, 362, 531, 685
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	295, 578
MmeI	TCCRAC	3 cut(s)	31, 65, 500
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	811
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	4 cut(s)	227, 458, 725, 750
MunI	CAATTG	2 cut(s)	136, 362
Mva1269I	GAATGC	1 cut(s)	582
MvaI	CCWGG	3 cut(s)	227, 725, 750
NarI	GGCGCC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	458
NdeII	GATC	1 cut(s)	719
NlaIII	CATG	4 cut(s)	50, 308, 518, 768
NlaIV	GGNNCC	2 cut(s)	109, 743
NmuCI	GTSAC	2 cut(s)	290, 344
NspI	RCATGY	1 cut(s)	50
OliI	CACNNNNGTG	1 cut(s)	480
PagI	TCATGA	1 cut(s)	304
PciI	ACATGT	1 cut(s)	46
PctI	GAATGC	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	179, 235, 607
PkrI	GCNGC	1 cut(s)	810
PleI	GAGTC	2 cut(s)	295, 578
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	2 cut(s)	295, 578
PscI	ACATGT	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	709
Psp6I	CCWGG	3 cut(s)	225, 723, 748
PspFI	CCCAGC	1 cut(s)	804
PspGI	CCWGG	3 cut(s)	225, 723, 748
PspN4I	GGNNCC	2 cut(s)	109, 743
PspPI	GGNCC	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	2 cut(s)	100, 257
RsaNI	GTAC	2 cut(s)	99, 256
RseI	CAYNNNNRTG	1 cut(s)	480
SatI	GCNGC	1 cut(s)	809
Sau3AI	GATC	1 cut(s)	719
Sau96I	GGNCC	1 cut(s)	405
SchI	GAGTC	2 cut(s)	295, 578
ScrFI	CCNGG	4 cut(s)	227, 458, 725, 750
SetI	ASST	5 cut(s)	189, 292, 394, 508, 777
SfaNI	GCATC	2 cut(s)	409, 646
SfcI	CTRYAG	1 cut(s)	355
SfoI	GGCGCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	480
Sse9I	AATT	6 cut(s)	54, 92, 136, 362, 531, 685
SsiI	CCGC	1 cut(s)	811
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	75, 170
StyD4I	CCNGG	4 cut(s)	225, 456, 723, 748
StyI	CCWWGG	2 cut(s)	27, 246
TaaI	ACNGT	2 cut(s)	445, 708
TasI	AATT	6 cut(s)	54, 92, 136, 362, 531, 685
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	179, 235, 607
TscAI	CASTG	3 cut(s)	150, 225, 299
TseFI	GTSAC	2 cut(s)	290, 344
TseI	GCWGC	1 cut(s)	808
Tsp45I	GTSAC	2 cut(s)	290, 344
TspDTI	ATGAA	2 cut(s)	48, 617
TspRI	CASTG	3 cut(s)	150, 225, 299
XapI	RAATTY	2 cut(s)	92, 685
XceI	RCATGY	1 cut(s)	50
XspI	CTAG	2 cut(s)	75, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.