Rh1DG268500

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016654
Physical Location & Seq
Forward (+)
48482935 .. 48484371
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG268500.1

Sequence Viewer

Length: 1437 bp
ATGAGGAAACCAAGTGTTGTTATGAAGTTGGGAACATGGAGAGGAGTTCAGAGGTCAATTTTTATATTGGGTAGTTTTGCTCTTCTCATCTCAATTGTTACCTTATCATCCAAATTCTACTCTCTCAAATCATTTCATGTTACTGATACCTTCTGCAATTATGTAAATACTGATAGTCAAAGCAGGATTGACAGTCATAAAGTCACTCTCGAAACTGTGATTCAGAAACTCCAACAGGAACTTAAAACGTTCAGAGATTCAACAACAGATTCGTCGTCATCTGCGCATTTGTTAAAGCACAGTACGTTTCTTGCTGATATTTTGGGGCTGATCGAGTCGGTGCACGAATCTCTGGTGCAGAATGACGAGACGACTCAGAAGTTAAGCAATGATGTCAAAGACATCCATCCTCTGCTAAAACCGAAGCAGCACTCTGATGAGCCTGCGGAGTATTTTCTAATAGAAGAGATTCGGAAGTATGTCAAGATCAAGCCGAACAGATTGGGAAAGCAGAATTTCATGGGAGCTAATGGGACTTTCACTAGCATTGGCCATGCTTGCTTTGCCATGAAGACAGAACTTGAAGAATACATGAACTACGACATTGGAGATATCTGCAATGACGATTGGAAGCTAGCTCAGAAGCTCATGGTTCATGGATGCGATCCACTTCCAAGGAGGAGGTGCTTCGCTCTGGCCCCGAAGATATATAGCAAGCCACTCCCAATCCATGAGTCCATGTGGAAGCTCCCAGACAATAGAAATGTCCGGTGGAGTCAGTATCGGTGCAAGAACTTTACTTGCCTTGCAAGTAATTCCGCTCCCAAGGGGTTCTTCAAATGTGCAGATTGCTTCAATCTGTCACACCACGAAATGCCTAGATGGATGCAACAAGTAAGTCTAGACTCAAAATTGAATCTGACTGCAGATTTTCTTATCCCCGAAGTGCTTCAAATCAAGCCGCGAGAGATCAGAATCGGACTGGATTTTAGCGTAGGGACTGGGACTTTTGCAGCTAGGATGAGGGAGTTCAATGTCACCATTGTCTCGGCAACTATCAATCTTGGGGCACCTTTTAATGAAATGATAGCTCTTCGTGGACTCGTCCCTCTTTACTTGACAATCAATCAACGGCTGCCATTCTTCGACAACACTCTGGATTTGATTCACACCACAAGATTTCTGGATGGCTGGATTGATTTTGTGCTGCTAGACTTTGTCTTGTATGATTGGGATAGAGTTTTGAGGCCTGGGGGTTTGCTGTGGATTGATAGCTTCTTCTGTGTGAAGGAAGATTTGAATGCTTATTTGGAGTCCCTTAAGATGCTGAGGTACAAGAAGCACAAATGGGTTGTTGTTCCAAAGATTGATAAAGATGATGATAGAGAGGTTTTCTTTTCTGCTGTTCTAGAAAAGCCGCCCAGACCATTCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29 zf-RING_2

Protein Analysis

478

Amino Acids

55.27

Weight (kDa)

8.74

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 318 - 441 5.8e-06 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016654)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01240
fragaria_vesca FvH4_7g15510
malus_domestica MD07G1130500.v1.1
prunus_persica Prupe.2G178700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0357841
rosa_laevigata RLG00000027992
rosa_multiflora Rmu_sc0002071.1_g000002 Rmu_sc0011109.1_g000006
rosa_roxburghii Rroxscaffold_4G00298460
rosa_rugosa Rorug01G0258900
rosa_samantha Rh1AG272900 Rh1BG240200 Rh1DG268500
rosa_wichuraiana Rw1G024360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 1069
AccBSI CCGCTC 1 cut(s) 821
AccII CGCG 1 cut(s) 964
AciI CCGC 4 cut(s) 446, 819, 962, 1418
AclI AACGTT 1 cut(s) 248
AclWI GGATC 1 cut(s) 659
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 2 cut(s) 113, 514
AfaI GTAC 2 cut(s) 304, 1334
AflII CTTAAG 1 cut(s) 1319
AgsI TTSAA 8 cut(s) 261, 584, 838, 856, 916, 953, 1033, 1300
AjnI CCWGG 1 cut(s) 1249
AjuI GAANNNNNNNTTGG 4 cut(s) 818, 850, 1292, 1324
AluBI AGCT 8 cut(s) 527, 634, 638, 646, 748, 1016, 1091, 1275
AluI AGCT 8 cut(s) 527, 634, 638, 646, 748, 1016, 1091, 1275
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 362, 1051
Alw44I GTGCAC 1 cut(s) 341
AlwI GGATC 1 cut(s) 659
AoxI GGCC 3 cut(s) 550, 696, 1247
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 4 cut(s) 427, 1013, 1135, 1207
ApoI RAATTY 2 cut(s) 113, 514
Asp700I GAANNNNTTC 2 cut(s) 468, 948
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 697
AsuHPI GGTGA 1 cut(s) 1030
AsuNHI GCTAGC 1 cut(s) 634
BaeGI GKGCMC 2 cut(s) 345, 1072
BalI TGGCCA 1 cut(s) 552
BanI GGYRCC 1 cut(s) 1069
BbsI GAAGAC 1 cut(s) 578
Bbv12I GWGCWC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 1328
BbvI GCAGC 4 cut(s) 439, 1025, 1122, 1194
BccI CCATC 3 cut(s) 414, 876, 1181
BceAI ACGGC 1 cut(s) 1148
BciT130I CCWGG 1 cut(s) 1251
BcoDI GTCTC 2 cut(s) 362, 1051
BfaI CTAG 7 cut(s) 543, 635, 879, 902, 1017, 1211, 1409
BfmI CTRYAG 1 cut(s) 924
BfrI CTTAAG 1 cut(s) 1319
BisI GCNGC 6 cut(s) 428, 962, 1014, 1136, 1208, 1418
BlsI GCNGC 6 cut(s) 429, 963, 1015, 1137, 1209, 1419
Bme1390I CCNGG 1 cut(s) 1251
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 2 cut(s) 699, 1071
BmrFI CCNGG 1 cut(s) 1251
BmrI ACTGGG 1 cut(s) 1011
BmsI GCATC 3 cut(s) 650, 876, 1314
BmtI GCTAGC 1 cut(s) 638
BmuI ACTGGG 1 cut(s) 1011
BpiI GAAGAC 1 cut(s) 578
Bpu10I CCTNAGC 1 cut(s) 1328
BsaBI GATNNNNATC 1 cut(s) 974
BsaJI CCNNGG 3 cut(s) 674, 825, 1250
BsaWI WCCGGW 2 cut(s) 768, 1431
Bse1I ACTGG 2 cut(s) 987, 1006
Bse3DI GCAATG 2 cut(s) 394, 625
Bse8I GATNNNNATC 1 cut(s) 974
BseBI CCWGG 1 cut(s) 1251
BseDI CCNNGG 3 cut(s) 674, 825, 1250
BseGI GGATG 7 cut(s) 107, 402, 406, 665, 891, 1026, 1192
BseJI GATNNNNATC 1 cut(s) 974
BseMI GCAATG 2 cut(s) 394, 625
BseMII CTCAG 3 cut(s) 389, 653, 1319
BseNI ACTGG 2 cut(s) 987, 1006
BseRI GAGGAG 2 cut(s) 57, 694
BseSI GKGCMC 2 cut(s) 345, 1072
BseXI GCAGC 4 cut(s) 439, 1025, 1122, 1194
BsgI GTGCAG 2 cut(s) 377, 864
Bsh1236I CGCG 1 cut(s) 964
BshFI GGCC 3 cut(s) 552, 698, 1249
BshNI GGYRCC 1 cut(s) 1069
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 2 cut(s) 769, 1432
BslFI GGGAC 5 cut(s) 547, 1012, 1018, 1091, 1300
BsmAI GTCTC 2 cut(s) 362, 1051
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 5 cut(s) 547, 1012, 1018, 1091, 1300
BsmI GAATGC 1 cut(s) 1306
BsnI GGCC 3 cut(s) 552, 698, 1249
Bsp1286I GDGCHC 2 cut(s) 345, 1072
Bsp143I GATC 4 cut(s) 330, 486, 664, 969
BspACI CCGC 4 cut(s) 446, 819, 962, 1418
BspANI GGCC 3 cut(s) 552, 698, 1249
BspCNI CTCAG 3 cut(s) 388, 652, 1320
BspFNI CGCG 1 cut(s) 964
BspLI GGNNCC 2 cut(s) 699, 1071
BspMAI CTGCAG 1 cut(s) 928
BspOI GCTAGC 1 cut(s) 638
BspPI GGATC 1 cut(s) 659
BspQI GCTCTTC 2 cut(s) 87, 1098
BspT107I GGYRCC 1 cut(s) 1069
BspTI CTTAAG 1 cut(s) 1319
BsrBI CCGCTC 1 cut(s) 821
BsrDI GCAATG 2 cut(s) 394, 625
BsrI ACTGG 2 cut(s) 987, 1006
BssECI CCNNGG 3 cut(s) 674, 825, 1250
BssMI GATC 4 cut(s) 330, 486, 664, 969
BssT1I CCWWGG 2 cut(s) 674, 825
Bst2UI CCWGG 1 cut(s) 1251
Bst4CI ACNGT 3 cut(s) 194, 217, 302
Bst6I CTCTTC 3 cut(s) 87, 459, 1098
BstAFI CTTAAG 1 cut(s) 1319
BstC8I GCNNGC 4 cut(s) 444, 559, 636, 716
BstDEI CTNAG 3 cut(s) 375, 639, 1328
BstF5I GGATG 7 cut(s) 107, 402, 406, 665, 891, 1026, 1192
BstFNI CGCG 1 cut(s) 964
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 4 cut(s) 333, 489, 667, 972
BstMAI GTCTC 2 cut(s) 362, 1051
BstMBI GATC 4 cut(s) 330, 486, 664, 969
BstMWI GCNNNNNNNGC 2 cut(s) 558, 563
BstNI CCWGG 1 cut(s) 1251
BstSCI CCNGG 1 cut(s) 1249
BstSFI CTRYAG 1 cut(s) 924
BstSLI GKGCMC 2 cut(s) 345, 1072
BstUI CGCG 1 cut(s) 964
BstV1I GCAGC 4 cut(s) 439, 1025, 1122, 1194
BstV2I GAAGAC 1 cut(s) 578
BsuRI GGCC 3 cut(s) 552, 698, 1249
BtsCI GGATG 7 cut(s) 107, 402, 406, 665, 891, 1026, 1192
Cac8I GCNNGC 4 cut(s) 444, 559, 636, 716
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 697
Csp6I GTAC 2 cut(s) 303, 1333
CviQI GTAC 2 cut(s) 303, 1333
DdeI CTNAG 3 cut(s) 375, 639, 1328
DpnI GATC 4 cut(s) 332, 488, 666, 971
DpnII GATC 4 cut(s) 330, 486, 664, 969
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 3 cut(s) 87, 459, 1098
EarI CTCTTC 3 cut(s) 87, 459, 1098
Eco130I CCWWGG 2 cut(s) 674, 825
Eco147I AGGCCT 1 cut(s) 1249
Eco32I GATATC 1 cut(s) 613
EcoRII CCWGG 1 cut(s) 1249
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 674, 825
ErhI CCWWGG 2 cut(s) 674, 825
Esp3I CGTCTC 1 cut(s) 362
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FaqI GGGAC 5 cut(s) 547, 1012, 1018, 1091, 1300
Fnu4HI GCNGC 6 cut(s) 428, 962, 1014, 1136, 1208, 1418
FokI GGATG 7 cut(s) 94, 389, 393, 672, 898, 1033, 1199
Fsp4HI GCNGC 6 cut(s) 428, 962, 1014, 1136, 1208, 1418
FspBI CTAG 7 cut(s) 543, 635, 879, 902, 1017, 1211, 1409
FspI TGCGCA 1 cut(s) 285
GlaI GCGC 1 cut(s) 285
GluI GCNGC 6 cut(s) 428, 962, 1014, 1136, 1208, 1418
HaeIII GGCC 3 cut(s) 552, 698, 1249
HapII CCGG 2 cut(s) 769, 1432
HhaI GCGC 1 cut(s) 286
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HpaII CCGG 2 cut(s) 769, 1432
HphI GGTGA 1 cut(s) 1030
Hpy166II GTNNAC 2 cut(s) 343, 1100
Hpy188III TCNNGA 6 cut(s) 209, 484, 902, 1157, 1184, 1409
Hpy8I GTNNAC 2 cut(s) 343, 1100
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 160, 1282
HpyCH4III ACNGT 3 cut(s) 194, 217, 302
HpyCH4IV ACGT 2 cut(s) 248, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 558, 563
HpyF3I CTNAG 3 cut(s) 375, 639, 1328
HpySE526I ACGT 2 cut(s) 248, 305
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 4 cut(s) 330, 486, 664, 969
LguI GCTCTTC 2 cut(s) 87, 1098
LmnI GCTCC 3 cut(s) 524, 753, 826
Lsp1109I GCAGC 4 cut(s) 439, 1025, 1122, 1194
LweI GCATC 3 cut(s) 650, 876, 1314
MaeI CTAG 7 cut(s) 543, 635, 879, 902, 1017, 1211, 1409
MaeII ACGT 2 cut(s) 248, 305
MaeIII GTNAC 5 cut(s) 97, 139, 202, 861, 1036
MalI GATC 4 cut(s) 332, 488, 666, 971
MbiI CCGCTC 1 cut(s) 821
MboI GATC 4 cut(s) 330, 486, 664, 969
MfeI CAATTG 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 345, 1072
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 7 cut(s) 57, 93, 113, 157, 514, 814, 911
MluNI TGGCCA 1 cut(s) 552
MlyI GAGTC 7 cut(s) 344, 367, 743, 784, 899, 1095, 1322
MmeI TCCRAC 1 cut(s) 256
Mox20I TGGCCA 1 cut(s) 552
MroXI GAANNNNTTC 2 cut(s) 468, 948
MscI TGGCCA 1 cut(s) 552
MseI TTAA 5 cut(s) 243, 293, 383, 1077, 1320
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 552
MspCI CTTAAG 1 cut(s) 1319
MspI CCGG 2 cut(s) 769, 1432
MspR9I CCNGG 1 cut(s) 1251
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 1306
MvaI CCWGG 1 cut(s) 1251
MvnI CGCG 1 cut(s) 964
MwoI GCNNNNNNNGC 2 cut(s) 558, 563
NdeII GATC 4 cut(s) 330, 486, 664, 969
NheI GCTAGC 1 cut(s) 634
NlaIV GGNNCC 2 cut(s) 699, 1071
NmeAIII GCCGAG 1 cut(s) 1028
NmuCI GTSAC 3 cut(s) 202, 861, 1036
NsbI TGCGCA 1 cut(s) 285
PceI AGGCCT 1 cut(s) 1249
PciSI GCTCTTC 2 cut(s) 87, 1098
PctI GAATGC 1 cut(s) 1306
PdmI GAANNNNTTC 2 cut(s) 468, 948
PfeI GAWTC 8 cut(s) 220, 257, 269, 347, 469, 916, 975, 1165
PflFI GACNNNGTC 1 cut(s) 1217
PkrI GCNGC 6 cut(s) 429, 963, 1015, 1137, 1209, 1419
PleI GAGTC 7 cut(s) 343, 367, 742, 783, 899, 1095, 1321
PpsI GAGTC 7 cut(s) 343, 367, 742, 783, 899, 1095, 1321
Psp1406I AACGTT 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 1249
PspGI CCWGG 1 cut(s) 1249
PspN4I GGNNCC 2 cut(s) 699, 1071
PspPI GGNCC 1 cut(s) 697
PstI CTGCAG 1 cut(s) 928
PsyI GACNNNGTC 1 cut(s) 1217
RsaI GTAC 2 cut(s) 304, 1334
RsaNI GTAC 2 cut(s) 303, 1333
RseI CAYNNNNRTG 1 cut(s) 435
SapI GCTCTTC 2 cut(s) 87, 1098
SaqAI TTAA 5 cut(s) 243, 293, 383, 1077, 1320
SatI GCNGC 6 cut(s) 428, 962, 1014, 1136, 1208, 1418
Sau3AI GATC 4 cut(s) 330, 486, 664, 969
Sau96I GGNCC 1 cut(s) 697
SchI GAGTC 7 cut(s) 344, 367, 743, 784, 899, 1095, 1322
ScrFI CCNGG 1 cut(s) 1251
SduI GDGCHC 2 cut(s) 345, 1072
SfaNI GCATC 3 cut(s) 650, 876, 1314
SfcI CTRYAG 1 cut(s) 924
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 1319
SmoI CTYRAG 1 cut(s) 1319
Sse9I AATT 7 cut(s) 57, 93, 113, 157, 514, 814, 911
SseBI AGGCCT 1 cut(s) 1249
SsiI CCGC 4 cut(s) 446, 819, 962, 1418
SspMI CTAG 7 cut(s) 543, 635, 879, 902, 1017, 1211, 1409
StuI AGGCCT 1 cut(s) 1249
StyD4I CCNGG 1 cut(s) 1249
StyI CCWWGG 2 cut(s) 674, 825
TaaI ACNGT 3 cut(s) 194, 217, 302
TaiI ACGT 2 cut(s) 251, 308
TaqI TCGA 3 cut(s) 210, 333, 1146
TasI AATT 7 cut(s) 57, 93, 113, 157, 514, 814, 911
TauI GCSGC 2 cut(s) 964, 1420
TfiI GAWTC 8 cut(s) 220, 257, 269, 347, 469, 916, 975, 1165
Tru1I TTAA 5 cut(s) 243, 293, 383, 1077, 1320
Tru9I TTAA 5 cut(s) 243, 293, 383, 1077, 1320
TseFI GTSAC 3 cut(s) 202, 861, 1036
TseI GCWGC 4 cut(s) 427, 1013, 1135, 1207
Tsp45I GTSAC 3 cut(s) 202, 861, 1036
TspDTI ATGAA 7 cut(s) 38, 125, 508, 584, 608, 644, 1095
Tth111I GACNNNGTC 1 cut(s) 1217
Vha464I CTTAAG 1 cut(s) 1319
VneI GTGCAC 1 cut(s) 341
XapI RAATTY 2 cut(s) 113, 514
XbaI TCTAGA 2 cut(s) 901, 1408
XcmI CCANNNNNNNNNTGG 1 cut(s) 1180
XmnI GAANNNNTTC 2 cut(s) 468, 948
XspI CTAG 7 cut(s) 543, 635, 879, 902, 1017, 1211, 1409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.