Rh2BG453500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018702
Physical Location & Seq
Reverse (-)
64083687 .. 64083884
198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG453500.1

Sequence Viewer

Length: 198 bp
ATGTCAAGGTCGTCGTCTCGGTCAACTCCGTCTGTGATGCCCGGTCTCTGGAAGGATCTTCCGGTCAAGCTCTACCACAAGGTCTACAGATTCTCAATGGCGCCGGTACACCTCGATCTCACTTCGAACACTTTCTCTGGCGAGATTCCGAGGAGCAGCGCCAACCTTGGTGAAAGATTTCGATCCAGAAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.41

Weight (kDa)

10.58

Isoelectric Point (pI)

86.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 84
AclWI GGATC 2 cut(s) 63, 177
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 21, 50
AlwI GGATC 2 cut(s) 63, 177
ApeKI GCWGC 1 cut(s) 156
Asp700I GAANNNNTTC 2 cut(s) 131, 177
AspLEI GCGC 2 cut(s) 103, 161
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 182
AsuII TTCGAA 1 cut(s) 125
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 168
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 2 cut(s) 21, 50
BfmI CTRYAG 1 cut(s) 85
BfoI RGCGCY 2 cut(s) 104, 162
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 149, 166
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 149, 166
BseJI GATNNNNATC 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 100
BsiSI CCGG 3 cut(s) 42, 62, 104
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 21, 50
BsmBI CGTCTC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 125
Bsp143I GATC 3 cut(s) 55, 115, 182
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 2 cut(s) 63, 177
BspT104I TTCGAA 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 149, 166
BssMI GATC 3 cut(s) 55, 115, 182
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 166
BstACI GRCGYC 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 125
BstH2I RGCGCY 2 cut(s) 104, 162
BstHHI GCGC 2 cut(s) 103, 161
BstKTI GATC 3 cut(s) 58, 118, 185
BstMAI GTCTC 2 cut(s) 21, 50
BstMBI GATC 3 cut(s) 55, 115, 182
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
CfoI GCGC 2 cut(s) 103, 161
Cfr10I RCCGGY 1 cut(s) 103
Csp6I GTAC 1 cut(s) 107
CviJI RGCY 1 cut(s) 70
CviKI_1 RGCY 1 cut(s) 70
CviQI GTAC 1 cut(s) 107
DinI GGCGCC 1 cut(s) 102
DpnI GATC 3 cut(s) 57, 117, 184
DpnII GATC 3 cut(s) 55, 115, 182
Eco130I CCWWGG 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 166
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 21
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
GlaI GCGC 2 cut(s) 102, 160
GluI GCNGC 1 cut(s) 157
HaeII RGCGCY 2 cut(s) 104, 162
HapII CCGG 3 cut(s) 42, 62, 104
HhaI GCGC 2 cut(s) 103, 161
Hin1I GRCGYC 1 cut(s) 101
Hin6I GCGC 2 cut(s) 101, 159
HinP1I GCGC 2 cut(s) 101, 159
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 2 cut(s) 90, 145
HpaII CCGG 3 cut(s) 42, 62, 104
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 3 cut(s) 24, 85, 109
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 49, 186
Hpy8I GTNNAC 3 cut(s) 24, 85, 109
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 101
HspAI GCGC 2 cut(s) 101, 159
KasI GGCGCC 1 cut(s) 100
Kzo9I GATC 3 cut(s) 55, 115, 182
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 5 cut(s) 34, 55, 75, 117, 123
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 27
MalI GATC 3 cut(s) 57, 117, 184
MboI GATC 3 cut(s) 55, 115, 182
MboII GAAGA 1 cut(s) 50
MflI RGATCY 1 cut(s) 55
Mly113I GGCGCC 1 cut(s) 101
MnlI CCTC 2 cut(s) 122, 144
MroXI GAANNNNTTC 2 cut(s) 131, 177
MspI CCGG 3 cut(s) 42, 62, 104
MspR9I CCNGG 1 cut(s) 42
NarI GGCGCC 1 cut(s) 101
NciI CCSGG 1 cut(s) 42
NdeII GATC 3 cut(s) 55, 115, 182
NlaIV GGNNCC 1 cut(s) 102
NspV TTCGAA 1 cut(s) 125
PdmI GAANNNNTTC 2 cut(s) 131, 177
PfeI GAWTC 2 cut(s) 90, 145
PkrI GCNGC 1 cut(s) 158
PluTI GGCGCC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 3 cut(s) 55, 115, 182
ScrFI CCNGG 1 cut(s) 42
SetI ASST 5 cut(s) 11, 72, 84, 114, 168
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 1 cut(s) 85
SfoI GGCGCC 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 125
SspDI GGCGCC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 1 cut(s) 166
TaqI TCGA 3 cut(s) 114, 125, 181
TaqII GACCGA 1 cut(s) 9
TfiI GAWTC 2 cut(s) 90, 145
TseI GCWGC 1 cut(s) 156
TspGWI ACGGA 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 84
XmnI GAANNNNTTC 2 cut(s) 131, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.