Rh7CG435800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018702
Physical Location & Seq
Forward (+)
57025053 .. 57025301
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG435800.1

Sequence Viewer

Length: 249 bp
ATGCTCGGCCTCTGGAAGGACTTTCCGGCCAAGCTCCACCACAAGGTCTACAGATTCTCAATGTCGCCGGTAACTGCCTCTCCAGCGAAATCAAAACTGGAGCTCATCTCCGGCGAGATTTGGCGCTCGAGCTCGACCTCCACTTGCAGTCTTGTCGGCGCGGGTGTTCAGGCCGGTGGTTCGAGCAGTCGAAGGTGCTACGATCACTTTGGTAGCAAACCTGCAGACGGTTGCTACAGTTCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.86

Weight (kDa)

9.6

Isoelectric Point (pI)

64.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 161
AciI CCGC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 27
AfiI CCNNNNNNNGG 3 cut(s) 16, 43, 227
AgsI TTSAA 1 cut(s) 243
AluBI AGCT 3 cut(s) 34, 103, 132
AluI AGCT 3 cut(s) 34, 103, 132
Alw21I GWGCWC 2 cut(s) 105, 134
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 3 cut(s) 7, 27, 171
AspLEI GCGC 2 cut(s) 126, 161
AvaI CYCGRG 1 cut(s) 127
BanII GRGCYC 2 cut(s) 105, 134
Bbv12I GWGCWC 2 cut(s) 105, 134
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BfmI CTRYAG 3 cut(s) 49, 222, 235
BfoI RGCGCY 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 2 cut(s) 66, 119
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 43, 227
Bse118I RCCGGY 2 cut(s) 67, 173
Bse1I ACTGG 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 16, 43, 227
BseNI ACTGG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 3 cut(s) 9, 29, 173
BsiHKAI GWGCWC 2 cut(s) 105, 134
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 4 cut(s) 26, 68, 111, 174
BslI CCNNNNNNNGG 3 cut(s) 16, 43, 227
BsnI GGCC 3 cut(s) 9, 29, 173
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 105, 134
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 161
BspANI GGCC 3 cut(s) 9, 29, 173
BspFNI CGCG 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 229
BsrFI RCCGGY 2 cut(s) 67, 173
BsrI ACTGG 1 cut(s) 102
BssAI RCCGGY 2 cut(s) 67, 173
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 230, 239
BstENI CCTNNNNNAGG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 2 cut(s) 126, 161
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSFI CTRYAG 3 cut(s) 49, 222, 235
BstUI CGCG 1 cut(s) 161
BsuRI GGCC 3 cut(s) 9, 29, 173
BveI ACCTGC 1 cut(s) 229
CfoI GCGC 2 cut(s) 126, 161
Cfr10I RCCGGY 2 cut(s) 67, 173
CviJI RGCY 6 cut(s) 9, 29, 34, 103, 132, 173
CviKI_1 RGCY 6 cut(s) 9, 29, 34, 103, 132, 173
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 27
Ecl136II GAGCTC 2 cut(s) 103, 132
Eco24I GRGCYC 2 cut(s) 105, 134
Eco53kI GAGCTC 2 cut(s) 103, 132
Eco88I CYCGRG 1 cut(s) 127
EcoICRI GAGCTC 2 cut(s) 103, 132
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoT38I GRGCYC 2 cut(s) 105, 134
FauI CCCGC 1 cut(s) 154
FblI GTMKAC 1 cut(s) 48
FriOI GRGCYC 2 cut(s) 105, 134
GlaI GCGC 2 cut(s) 125, 160
GsuI CTGGAG 2 cut(s) 66, 119
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 3 cut(s) 9, 29, 173
HapII CCGG 4 cut(s) 26, 68, 111, 174
HhaI GCGC 2 cut(s) 126, 161
Hin6I GCGC 2 cut(s) 124, 159
HinP1I GCGC 2 cut(s) 124, 159
HinfI GANTC 1 cut(s) 54
HpaII CCGG 4 cut(s) 26, 68, 111, 174
Hpy166II GTNNAC 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 10, 186
HpyCH4III ACNGT 2 cut(s) 230, 239
HpyCH4V TGCA 2 cut(s) 147, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HspAI GCGC 2 cut(s) 124, 159
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 2 cut(s) 39, 100
LpnPI CCDG 8 cut(s) 39, 81, 83, 96, 124, 155, 187, 234
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MhlI GDGCHC 2 cut(s) 105, 134
MnlI CCTC 3 cut(s) 20, 88, 148
MspI CCGG 4 cut(s) 26, 68, 111, 174
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 127
PfeI GAWTC 1 cut(s) 54
Psp124BI GAGCTC 2 cut(s) 105, 134
PspXI VCTCGAGB 1 cut(s) 127
PstI CTGCAG 1 cut(s) 226
SacI GAGCTC 2 cut(s) 105, 134
Sau3AI GATC 1 cut(s) 202
SduI GDGCHC 2 cut(s) 105, 134
SetI ASST 8 cut(s) 36, 48, 105, 134, 140, 197, 223, 248
SfcI CTRYAG 3 cut(s) 49, 222, 235
Sfr274I CTCGAG 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SsiI CCGC 1 cut(s) 161
SstI GAGCTC 2 cut(s) 105, 134
TaaI ACNGT 2 cut(s) 230, 239
TaqI TCGA 4 cut(s) 128, 134, 182, 190
TfiI GAWTC 1 cut(s) 54
XagI CCTNNNNNAGG 1 cut(s) 14
XhoI CTCGAG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.