Rh5AG191900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018702
Physical Location & Seq
Reverse (-)
22183027 .. 22186725
3699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG191900.1

Sequence Viewer

Length: 354 bp
ATGATGCTCGGCCTCTGGAAGGACTTTCCGGCCAAGCTCCACCACAAGAGTAGCACAACAACCGCATTGAAATCGACAATCGATCGGAGACTCGTTGACGTCGTTGCAGCAAAAGCAGGCTTCCAGCAACAAGGTCTGATCATATTTTCGGTCACTGTGCTCTTCGCTCACCAAACGCAGTTGTTGGACATCGATCCCTCCAAGCTCAAGAGCTCCATGACTTTGGTCTTCAGGACGGTTGTTGAAGGACGCCTTGAAGTTCGCGAGCACCTTGAGGTTTGTGCCTTGGGAGGGTTTCTCAAAAGTTCGTCTAAGCTGATGGGCTCGATAGGTTTTGGATCCTGGGCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.86

Weight (kDa)

9.73

Isoelectric Point (pI)

24.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
AccB1I GGYRCC 1 cut(s) 346
AccII CGCG 1 cut(s) 264
AciI CCGC 1 cut(s) 63
AclWI GGATC 3 cut(s) 188, 333, 346
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 214
AcyI GRCGYC 2 cut(s) 99, 250
AfiI CCNNNNNNNGG 2 cut(s) 19, 291
AgsI TTSAA 3 cut(s) 70, 245, 257
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 4 cut(s) 37, 205, 213, 316
AluI AGCT 4 cut(s) 37, 205, 213, 316
Alw21I GWGCWC 3 cut(s) 162, 215, 270
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 3 cut(s) 188, 333, 346
AoxI GGCC 2 cut(s) 10, 30
ApeKI GCWGC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 349
BamHI GGATCC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 2 cut(s) 215, 326
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 3 cut(s) 162, 215, 270
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BciT130I CCWGG 1 cut(s) 343
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 82
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 343
BmiI GGNNCC 2 cut(s) 340, 348
BmrFI CCNGG 1 cut(s) 343
BoxI GACNNNNGTC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 220
BplI GAGNNNNNCTC 2 cut(s) 282, 314
BpuEI CTTGAG 2 cut(s) 191, 293
Bsa29I ATCGAT 2 cut(s) 81, 192
BsaHI GRCGYC 2 cut(s) 99, 250
BsaJI CCNNGG 2 cut(s) 285, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 291
BseBI CCWGG 1 cut(s) 343
BseCI ATCGAT 2 cut(s) 81, 192
BseDI CCNNGG 2 cut(s) 285, 342
BseLI CCNNNNNNNGG 2 cut(s) 19, 291
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 2 cut(s) 12, 32
BshNI GGYRCC 1 cut(s) 346
BshVI ATCGAT 2 cut(s) 81, 192
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 3 cut(s) 162, 215, 270
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 19, 291
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 12, 32
Bsp1286I GDGCHC 5 cut(s) 162, 215, 270, 326, 349
Bsp143I GATC 4 cut(s) 82, 138, 193, 338
Bsp68I TCGCGA 1 cut(s) 264
BspACI CCGC 1 cut(s) 63
BspANI GGCC 2 cut(s) 12, 32
BspDI ATCGAT 2 cut(s) 81, 192
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 340, 348
BspPI GGATC 3 cut(s) 188, 333, 346
BspQI GCTCTTC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 285, 342
BssMI GATC 4 cut(s) 82, 138, 193, 338
BssNI GRCGYC 2 cut(s) 99, 250
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 157, 238
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 2 cut(s) 99, 250
BstC8I GCNNGC 2 cut(s) 118, 266
BstDEI CTNAG 1 cut(s) 312
BstENI CCTNNNNNAGG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 264
BstKTI GATC 4 cut(s) 85, 141, 196, 341
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 4 cut(s) 82, 138, 193, 338
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 343
BstPAI GACNNNNGTC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 341
BstSLI GKGCMC 1 cut(s) 349
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 338
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 338
Bsu15I ATCGAT 2 cut(s) 81, 192
BsuRI GGCC 2 cut(s) 12, 32
BsuTUI ATCGAT 2 cut(s) 81, 192
BtsIMutI CAGTG 1 cut(s) 153
BtuMI TCGCGA 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 118, 266
ClaI ATCGAT 2 cut(s) 81, 192
CseI GACGC 1 cut(s) 258
CviAII CATG 1 cut(s) 217
CviJI RGCY 8 cut(s) 12, 32, 37, 120, 205, 213, 316, 324
CviKI_1 RGCY 8 cut(s) 12, 32, 37, 120, 205, 213, 316, 324
DdeI CTNAG 1 cut(s) 312
DpnI GATC 4 cut(s) 84, 140, 195, 340
DpnII GATC 4 cut(s) 82, 138, 193, 338
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 2 cut(s) 215, 326
Eco53kI GAGCTC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 2 cut(s) 215, 326
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 220
FaiI YATR 3 cut(s) 143, 218, 352
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 1 cut(s) 216
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 108
FriOI GRGCYC 2 cut(s) 215, 326
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 2 cut(s) 12, 32
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 258
Hin1I GRCGYC 2 cut(s) 99, 250
Hin1II CATG 1 cut(s) 220
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 87, 138
Hpy188III TCNNGA 4 cut(s) 16, 208, 232, 263
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 13, 239
HpyCH4III ACNGT 2 cut(s) 157, 238
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 2 cut(s) 99, 250
Hsp92II CATG 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 4 cut(s) 82, 138, 193, 338
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 2 cut(s) 42, 218
LpnPI CCDG 5 cut(s) 42, 102, 137, 217, 328
Lsp1109I GCAGC 1 cut(s) 119
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 151
MalI GATC 4 cut(s) 84, 140, 195, 340
MboI GATC 4 cut(s) 82, 138, 193, 338
MboII GAAGA 2 cut(s) 154, 220
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 5 cut(s) 162, 215, 270, 326, 349
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 23, 208, 268, 284
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 343
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 4 cut(s) 82, 138, 193, 338
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 340, 348
NmuCI GTSAC 1 cut(s) 151
NruI TCGCGA 1 cut(s) 264
PciSI GCTCTTC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PkrI GCNGC 1 cut(s) 109
Ple19I CGATCG 1 cut(s) 85
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PshAI GACNNNNGTC 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 340, 348
PsuI RGATCY 1 cut(s) 338
PvuI CGATCG 1 cut(s) 85
RruI TCGCGA 1 cut(s) 264
SacI GAGCTC 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 167
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 4 cut(s) 82, 138, 193, 338
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 5 cut(s) 162, 215, 270, 326, 349
SetI ASST 9 cut(s) 39, 102, 136, 207, 215, 273, 279, 318, 334
SmlI CTYRAG 2 cut(s) 206, 272
SmoI CTYRAG 2 cut(s) 206, 272
SsiI CCGC 1 cut(s) 63
SstI GAGCTC 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 157, 238
TaiI ACGT 1 cut(s) 102
TaqI TCGA 4 cut(s) 74, 81, 192, 326
TaqII GACCGA 1 cut(s) 139
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 151
TspRI CASTG 1 cut(s) 160
XagI CCTNNNNNAGG 1 cut(s) 17
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.