Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018702

Physical Location & Seq

Genomic Coordinates Reverse (-)

37555748 .. 37557531

Gene Structure 1784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGCCGCCGGAATTGTGAGCTCGGAGAGTTGTGGTTTGCCGTCTCTGATTCCAAGCATCGTCGCTATGCGAAGAAGAACTCCCAAGCTCCGTCGATGATGCTCGGCCTCTGGAAGGACTTTCCGGCCAAGCTCCACCACAAGGTCTACAGATTCTCAATGTCGCCGGTAACCGCCTCTCCAGCGAAATCAAAACCGAAGCTCATCTCCGGCGAGATTTGGCACTCGAGCTCGACCTCCGCTTGCAGTCTCGTCGGCGCGGGTGTTCAGGCCAGTGGTTCGAGCAGTCGAAGTCTCCGGGCAGGAATGGGTGACAAGAAGAAGAAGAAGGCTACTATGCTCATCCGACTTGTGTCATCTGCTAGGACTGGATATTTCTATGTCACCAAGAAGCCGTCCGGGATGACAGAAAAACTTGAGTTGCGAAAATATGATCCTCGGGTAAAACTTCATGTTCTATTTACTGAGGCCAAATTGAAAATTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019866 GO:0022411 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032984 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0070126 GO:0071704 GO:0071840 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L33

Protein Analysis

162

Amino Acids

18.09

Weight (kDa)

10.44

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L33	PF00471	114 - 158	3.2e-11	Ribosomal protein L33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018702)

Species	Orthologous Gene IDs
rosa_samantha	Rh2BG453500 Rh3BG360900 Rh5AG191900 Rh5BG189600 Rh5BG394600 Rh5BG505400 Rh5CG418400 Rh7AG319500 Rh7CG336400 Rh7CG435800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	260
AciI	CCGC	4 cut(s)	7, 174, 240, 260
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	115, 142
AgsI	TTSAA	1 cut(s)	478
AluBI	AGCT	5 cut(s)	22, 89, 133, 202, 231
AluI	AGCT	5 cut(s)	22, 89, 133, 202, 231
Alw21I	GWGCWC	2 cut(s)	24, 233
Alw26I	GTCTC	3 cut(s)	49, 254, 299
AlwI	GGATC	1 cut(s)	428
Ama87I	CYCGRG	2 cut(s)	226, 438
AoxI	GGCC	5 cut(s)	4, 106, 126, 270, 468
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	299, 400
AsuHPI	GGTGA	2 cut(s)	323, 376
AvaI	CYCGRG	2 cut(s)	226, 438
BanII	GRGCYC	2 cut(s)	24, 233
Bbv12I	GWGCWC	2 cut(s)	24, 233
BceAI	ACGGC	2 cut(s)	26, 379
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BcnI	CCSGG	2 cut(s)	299, 400
BcoDI	GTCTC	3 cut(s)	49, 254, 299
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	148
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	299, 400
BmeT110I	CYCGRG	2 cut(s)	226, 438
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	299, 400
BmsI	GCATC	2 cut(s)	67, 90
BoxI	GACNNNNGTC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	2 cut(s)	299, 400
BsaJI	CCNNGG	1 cut(s)	437
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 142
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	2 cut(s)	273, 373
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	2 cut(s)	342, 408
BseLI	CCNNNNNNNGG	2 cut(s)	115, 142
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	2 cut(s)	273, 373
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	5 cut(s)	6, 108, 128, 272, 470
BsiHKAI	GWGCWC	2 cut(s)	24, 233
BsiHKCI	CYCGRG	2 cut(s)	226, 438
BsiSI	CCGG	6 cut(s)	10, 125, 167, 210, 298, 399
BslI	CCNNNNNNNGG	2 cut(s)	115, 142
BsmAI	GTCTC	3 cut(s)	49, 254, 299
BsmBI	CGTCTC	1 cut(s)	49
BsnI	GGCC	5 cut(s)	6, 108, 128, 272, 470
BsoBI	CYCGRG	2 cut(s)	226, 438
Bsp1286I	GDGCHC	2 cut(s)	24, 233
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	4 cut(s)	7, 174, 240, 260
BspANI	GGCC	5 cut(s)	6, 108, 128, 272, 470
BspCNI	CTCAG	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	260
BspPI	GGATC	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	273, 373
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	465
BstEII	GGTNACC	1 cut(s)	169
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	342, 408
BstFNI	CGCG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	3 cut(s)	49, 254, 299
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstPAI	GACNNNNGTC	1 cut(s)	352
BstPI	GGTNACC	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	297, 398
BstSFI	CTRYAG	1 cut(s)	148
BstUI	CGCG	1 cut(s)	260
BsuRI	GGCC	5 cut(s)	6, 108, 128, 272, 470
BtsCI	GGATG	2 cut(s)	342, 408
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	452
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	126
Ecl136II	GAGCTC	2 cut(s)	22, 231
Eco24I	GRGCYC	2 cut(s)	24, 233
Eco53kI	GAGCTC	2 cut(s)	22, 231
Eco88I	CYCGRG	2 cut(s)	226, 438
Eco91I	GGTNACC	1 cut(s)	169
EcoICRI	GAGCTC	2 cut(s)	22, 231
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	24, 233
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	455
FaiI	YATR	5 cut(s)	69, 338, 381, 432, 453
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	2 cut(s)	329, 415
FriOI	GRGCYC	2 cut(s)	24, 233
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	7
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	5 cut(s)	6, 108, 128, 272, 470
HapII	CCGG	6 cut(s)	10, 125, 167, 210, 298, 399
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	455
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	2 cut(s)	50, 153
HpaII	CCGG	6 cut(s)	10, 125, 167, 210, 298, 399
HphI	GGTGA	2 cut(s)	323, 376
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	26, 49, 347
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	3 cut(s)	66, 97, 257
HpyAV	CCTTC	2 cut(s)	109, 322
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	465
Hsp92II	CATG	1 cut(s)	455
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	94, 138
LweI	GCATC	2 cut(s)	67, 90
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	3 cut(s)	169, 311, 382
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	5 cut(s)	85, 88, 331, 334, 337
MhlI	GDGCHC	2 cut(s)	24, 233
MluCI	AATT	3 cut(s)	13, 473, 480
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	5 cut(s)	119, 187, 247, 447, 460
MseI	TTAA	1 cut(s)	483
MspI	CCGG	6 cut(s)	10, 125, 167, 210, 298, 399
MspR9I	CCNGG	2 cut(s)	299, 400
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	2 cut(s)	299, 400
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	455
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	2 cut(s)	311, 382
PaeR7I	CTCGAG	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	50, 153
PfoI	TCCNGGA	1 cut(s)	398
PkrI	GCNGC	1 cut(s)	8
PshAI	GACNNNNGTC	1 cut(s)	352
Psp124BI	GAGCTC	2 cut(s)	24, 233
PspEI	GGTNACC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	226
SacI	GAGCTC	2 cut(s)	24, 233
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	299, 400
SduI	GDGCHC	2 cut(s)	24, 233
SetI	ASST	7 cut(s)	24, 91, 135, 147, 204, 233, 239
SfaNI	GCATC	2 cut(s)	67, 90
SfcI	CTRYAG	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	226
SmlI	CTYRAG	2 cut(s)	226, 416
SmoI	CTYRAG	2 cut(s)	226, 416
Sse9I	AATT	3 cut(s)	13, 473, 480
SsiI	CCGC	4 cut(s)	7, 174, 240, 260
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	2 cut(s)	24, 233
StyD4I	CCNGG	2 cut(s)	297, 398
TaqI	TCGA	5 cut(s)	95, 227, 233, 281, 289
TasI	AATT	3 cut(s)	13, 473, 480
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	50, 153
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	311, 382
Tsp45I	GTSAC	2 cut(s)	311, 382
TspDTI	ATGAA	1 cut(s)	440
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.