Rh5BG505400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018702
Physical Location & Seq
Reverse (-)
80303867 .. 80304202
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG505400.1

Sequence Viewer

Length: 336 bp
ATGGGCTGCCGGAATTGTGAGCTCGGAGAGTTGTGGTTCGCCGTCTCCGATTCCAAGCATCGTCGCTACGCGAAGAAGAACTCCCAAGCTCCGTTGATGATGCCCGACCTCTGGAAGGACTTTCCGGCCAAGCTCCACCACAAGGTCTACAGATTCTCAATGTCGCCGGTAACCGCCTCTCCAGCGAAATCAAAACCGGAGCTCATCTCCGGCGAGATTTGGCGCTCGACCTCCGCTTGCAGTCTCGTCAGCGCGGGTGTTCAAGCCGGTGGTTCGAGCAGTCGAAGGTGCTACGATCACTTTGGTAGCAAACCTGCAGACGGTTGCTACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.27

Weight (kDa)

9.37

Isoelectric Point (pI)

67.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 71, 254
AciI CCGC 3 cut(s) 174, 234, 254
AcoI YGGCCR 1 cut(s) 126
AfiI CCNNNNNNNGG 4 cut(s) 111, 115, 142, 320
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 4 cut(s) 22, 89, 133, 202
AluI AGCT 4 cut(s) 22, 89, 133, 202
Alw21I GWGCWC 2 cut(s) 24, 204
Alw26I GTCTC 2 cut(s) 49, 248
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 6
AspLEI GCGC 2 cut(s) 225, 254
BanII GRGCYC 2 cut(s) 24, 204
Bbv12I GWGCWC 2 cut(s) 24, 204
BceAI ACGGC 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 49, 248
BfmI CTRYAG 3 cut(s) 148, 315, 328
BfoI RGCGCY 1 cut(s) 226
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmsI GCATC 2 cut(s) 67, 90
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 115, 142, 320
Bse118I RCCGGY 2 cut(s) 166, 266
BseLI CCNNNNNNNGG 4 cut(s) 111, 115, 142, 320
Bsh1236I CGCG 2 cut(s) 71, 254
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 24, 204
BsiSI CCGG 6 cut(s) 10, 125, 167, 197, 210, 267
BslI CCNNNNNNNGG 4 cut(s) 111, 115, 142, 320
BsmAI GTCTC 2 cut(s) 49, 248
BsmBI CGTCTC 1 cut(s) 49
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 24, 204
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 3 cut(s) 174, 234, 254
BspANI GGCC 1 cut(s) 128
BspFNI CGCG 2 cut(s) 71, 254
BspMAI CTGCAG 1 cut(s) 319
BspMI ACCTGC 1 cut(s) 322
BsrFI RCCGGY 2 cut(s) 166, 266
BssAI RCCGGY 2 cut(s) 166, 266
BssMI GATC 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 323, 332
BstC8I GCNNGC 1 cut(s) 238
BstEII GGTNACC 1 cut(s) 169
BstENI CCTNNNNNAGG 1 cut(s) 113
BstFNI CGCG 2 cut(s) 71, 254
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 2 cut(s) 225, 254
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 2 cut(s) 49, 248
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstPI GGTNACC 1 cut(s) 169
BstSFI CTRYAG 3 cut(s) 148, 315, 328
BstUI CGCG 2 cut(s) 71, 254
BsuRI GGCC 1 cut(s) 128
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 2 cut(s) 225, 254
Cfr10I RCCGGY 2 cut(s) 166, 266
CviJI RGCY 7 cut(s) 6, 22, 89, 128, 133, 202, 266
CviKI_1 RGCY 7 cut(s) 6, 22, 89, 128, 133, 202, 266
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 126
Ecl136II GAGCTC 2 cut(s) 22, 202
Eco24I GRGCYC 2 cut(s) 24, 204
Eco53kI GAGCTC 2 cut(s) 22, 202
Eco91I GGTNACC 1 cut(s) 169
EcoICRI GAGCTC 2 cut(s) 22, 202
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 169
EcoT38I GRGCYC 2 cut(s) 24, 204
Esp3I CGTCTC 1 cut(s) 49
FauI CCCGC 1 cut(s) 247
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 7
FriOI GRGCYC 2 cut(s) 24, 204
Fsp4HI GCNGC 1 cut(s) 7
GlaI GCGC 2 cut(s) 224, 253
GluI GCNGC 1 cut(s) 7
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 1 cut(s) 128
HapII CCGG 6 cut(s) 10, 125, 167, 197, 210, 267
HhaI GCGC 2 cut(s) 225, 254
Hin6I GCGC 2 cut(s) 223, 252
HinP1I GCGC 2 cut(s) 223, 252
HinfI GANTC 2 cut(s) 50, 153
HpaII CCGG 6 cut(s) 10, 125, 167, 197, 210, 267
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 26, 49
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 109, 279
HpyCH4III ACNGT 2 cut(s) 323, 332
HpyCH4V TGCA 2 cut(s) 240, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HspAI GCGC 2 cut(s) 223, 252
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 3 cut(s) 94, 138, 199
LpnPI CCDG 9 cut(s) 23, 97, 138, 180, 195, 210, 223, 280, 327
LweI GCATC 2 cut(s) 67, 90
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 2 cut(s) 85, 88
MhlI GDGCHC 2 cut(s) 24, 204
MluCI AATT 1 cut(s) 13
MnlI CCTC 3 cut(s) 119, 187, 241
MspI CCGG 6 cut(s) 10, 125, 167, 197, 210, 267
MvnI CGCG 2 cut(s) 71, 254
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 2 cut(s) 50, 153
PkrI GCNGC 1 cut(s) 8
Psp124BI GAGCTC 2 cut(s) 24, 204
PspEI GGTNACC 1 cut(s) 169
PstI CTGCAG 1 cut(s) 319
SacI GAGCTC 2 cut(s) 24, 204
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 1 cut(s) 295
SduI GDGCHC 2 cut(s) 24, 204
SetI ASST 9 cut(s) 24, 91, 111, 135, 147, 204, 233, 290, 316
SfaNI GCATC 2 cut(s) 67, 90
SfcI CTRYAG 3 cut(s) 148, 315, 328
Sse9I AATT 1 cut(s) 13
SsiI CCGC 3 cut(s) 174, 234, 254
SstI GAGCTC 2 cut(s) 24, 204
TaaI ACNGT 2 cut(s) 323, 332
TaqI TCGA 3 cut(s) 227, 275, 283
TasI AATT 1 cut(s) 13
TfiI GAWTC 2 cut(s) 50, 153
TseI GCWGC 1 cut(s) 6
TspGWI ACGGA 1 cut(s) 81
XagI CCTNNNNNAGG 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.