Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0018702

Physical Location & Seq

Genomic Coordinates Reverse (-)

36149032 .. 36150811

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG319500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGCCGCCGGAATTGTGAGCTCGGAGAGTTGTGGTTTGCCGTCTCTGATTCCAAGCATCGTCGCTATGCGAAGAAGAACTCCCAAGCTCCGTCGATGATGCTCGGCCTCTGGAAGGACTTTCCGGCCAAGCTCCACCACAAGGTCTACAGATTCTCAATGTCGCCGTTTTCTTCTCCCTCGTCTATCAGTCTCCGGGCAGGAATGGGTGACAAGAAGAAGAAGAAGGCTACTATGCTCATCCGACTTGTGTCATCTGCTAGGACTGGATATTTCTATGTCACCAAGAAGCCGTCCGGGATGACAGAAAAACTTGAGTTGCGAAAATATGATCCTCGGGTAAAACTTCATGTTCTATTTACTGAGGCCAAATTGAAAATTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019866 GO:0022411 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032984 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0070125 GO:0070126 GO:0071704 GO:0071840 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L33

Protein Analysis

128

Amino Acids

14.8

Weight (kDa)

10.45

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L33	PF00471	80 - 124	2e-11	Ribosomal protein L33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018702)

Species	Orthologous Gene IDs
rosa_samantha	Rh2BG453500 Rh3BG360900 Rh5AG191900 Rh5BG189600 Rh5BG394600 Rh5BG505400 Rh5CG418400 Rh7AG319500 Rh7CG336400 Rh7CG435800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	115, 142
AgsI	TTSAA	1 cut(s)	376
AluBI	AGCT	3 cut(s)	22, 89, 133
AluI	AGCT	3 cut(s)	22, 89, 133
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	49, 197
AlwI	GGATC	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	4 cut(s)	4, 106, 126, 366
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	197, 298
AsuHPI	GGTGA	2 cut(s)	221, 274
AvaI	CYCGRG	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BceAI	ACGGC	3 cut(s)	26, 151, 277
BcnI	CCSGG	2 cut(s)	197, 298
BcoDI	GTCTC	2 cut(s)	49, 197
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	148
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	197, 298
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	197, 298
BmsI	GCATC	2 cut(s)	67, 90
BoxI	GACNNNNGTC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	197, 298
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 142
Bse1I	ACTGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	2 cut(s)	240, 306
BseLI	CCNNNNNNNGG	2 cut(s)	115, 142
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	271
BshFI	GGCC	4 cut(s)	6, 108, 128, 368
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	4 cut(s)	10, 125, 196, 297
BslI	CCNNNNNNNGG	2 cut(s)	115, 142
BsmAI	GTCTC	2 cut(s)	49, 197
BsmBI	CGTCTC	1 cut(s)	49
BsnI	GGCC	4 cut(s)	6, 108, 128, 368
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	4 cut(s)	6, 108, 128, 368
BspCNI	CTCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	363
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	240, 306
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	2 cut(s)	49, 197
BstMBI	GATC	1 cut(s)	331
BstPAI	GACNNNNGTC	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	195, 296
BstSFI	CTRYAG	1 cut(s)	148
BsuRI	GGCC	4 cut(s)	6, 108, 128, 368
BtsCI	GGATG	2 cut(s)	240, 306
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	9 cut(s)	6, 22, 89, 108, 128, 133, 230, 292, 368
CviKI_1	RGCY	9 cut(s)	6, 22, 89, 108, 128, 133, 230, 292, 368
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	22
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	353
FaiI	YATR	5 cut(s)	69, 236, 279, 330, 351
FatI	CATG	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	2 cut(s)	227, 313
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	1 cut(s)	7
HaeIII	GGCC	4 cut(s)	6, 108, 128, 368
HapII	CCGG	4 cut(s)	10, 125, 196, 297
Hin1II	CATG	1 cut(s)	353
HinfI	GANTC	2 cut(s)	50, 153
HpaII	CCGG	4 cut(s)	10, 125, 196, 297
HphI	GGTGA	2 cut(s)	221, 274
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	26, 49, 245
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	66, 97
HpyAV	CCTTC	2 cut(s)	109, 220
HpyF3I	CTNAG	1 cut(s)	363
Hsp92II	CATG	1 cut(s)	353
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	2 cut(s)	94, 138
LpnPI	CCDG	7 cut(s)	23, 97, 138, 186, 209, 252, 310
LweI	GCATC	2 cut(s)	67, 90
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	209, 280
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	6 cut(s)	85, 88, 165, 229, 232, 235
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	3 cut(s)	13, 371, 378
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	4 cut(s)	119, 190, 345, 358
MseI	TTAA	1 cut(s)	381
MspI	CCGG	4 cut(s)	10, 125, 196, 297
MspR9I	CCNGG	2 cut(s)	197, 298
NciI	CCSGG	2 cut(s)	197, 298
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	353
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	2 cut(s)	209, 280
PfeI	GAWTC	2 cut(s)	50, 153
PfoI	TCCNGGA	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	8
PshAI	GACNNNNGTC	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	197, 298
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	4 cut(s)	24, 91, 135, 147
SfaNI	GCATC	2 cut(s)	67, 90
SfcI	CTRYAG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	3 cut(s)	13, 371, 378
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	195, 296
TaqI	TCGA	1 cut(s)	95
TasI	AATT	3 cut(s)	13, 371, 378
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	50, 153
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TseFI	GTSAC	2 cut(s)	209, 280
Tsp45I	GTSAC	2 cut(s)	209, 280
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.