Rh3BG360900
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018702
Physical Location & Seq
Reverse (-)
43594103 .. 43594396
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG360900.1

Sequence Viewer

Length: 294 bp
ATGGTCCGCCTGAATTGTGAGCTCGGAGAGTTGTGGTTCGCCGTCTCCGATTCCAAGCATCGTCGCCACGTGAAGAAGAACTCCCAAGCTCCGTCGATGATGCTCGATGTCGCCGAAATCTCCGGCGAGCTCCCTCCGAGTCTGTTGTACCTCGGTCTCTCTTCGAACACTTTCTCCGGCAAGATTCTGAGGTGCATCGCCAACCTGACTCAGCTTCAGCTCATCAACCTGTCAAACGATCAGTTTTTCGGTCAGGTTCTGGCGATCTTTAGCTTCAGCTGGGTTCCGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

97

Amino Acids

10.84

Weight (kDa)

7.83

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 7
AcuI CTGAAG 2 cut(s) 200, 259
AcvI CACGTG 1 cut(s) 70
AfaI GTAC 1 cut(s) 149
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 7 cut(s) 22, 89, 130, 214, 220, 273, 279
AluI AGCT 7 cut(s) 22, 89, 130, 214, 220, 273, 279
Alw21I GWGCWC 2 cut(s) 24, 132
Alw26I GTCTC 2 cut(s) 49, 161
AlwNI CAGNNNCTG 1 cut(s) 259
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 4
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 24, 132
BbrPI CACGTG 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 24, 132
BceAI ACGGC 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 49, 161
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 285
BmsI GCATC 3 cut(s) 67, 90, 204
Bpu14I TTCGAA 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
BseDI CCNNGG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 179, 224
BseYI CCCAGC 1 cut(s) 279
BsiHKAI GWGCWC 2 cut(s) 24, 132
BsiSI CCGG 3 cut(s) 123, 177, 287
BsmAI GTCTC 2 cut(s) 49, 161
BsmBI CGTCTC 1 cut(s) 49
Bso31I GGTCTC 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 24, 132
Bsp143I GATC 2 cut(s) 238, 264
BspACI CCGC 1 cut(s) 7
BspCNI CTCAG 2 cut(s) 180, 223
BspLI GGNNCC 1 cut(s) 285
BspT104I TTCGAA 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 2 cut(s) 238, 264
Bst6I CTCTTC 1 cut(s) 166
BstBAI YACGTR 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 188, 210
BstKTI GATC 2 cut(s) 241, 267
BstMAI GTCTC 2 cut(s) 49, 161
BstMBI GATC 2 cut(s) 238, 264
BtgZI GCGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 291
CviJI RGCY 7 cut(s) 22, 89, 130, 214, 220, 273, 279
CviKI_1 RGCY 7 cut(s) 22, 89, 130, 214, 220, 273, 279
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 188, 210
DpnI GATC 2 cut(s) 240, 266
DpnII GATC 2 cut(s) 238, 264
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Ecl136II GAGCTC 2 cut(s) 22, 130
Eco24I GRGCYC 2 cut(s) 24, 132
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 2 cut(s) 22, 130
Eco57I CTGAAG 2 cut(s) 200, 259
Eco72I CACGTG 1 cut(s) 70
EcoICRI GAGCTC 2 cut(s) 22, 130
EcoT38I GRGCYC 2 cut(s) 24, 132
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 1 cut(s) 294
FaiI YATR 1 cut(s) 292
FatI CATG 1 cut(s) 290
FriOI GRGCYC 2 cut(s) 24, 132
GsaI CCCAGC 1 cut(s) 283
HapII CCGG 3 cut(s) 123, 177, 287
Hin1II CATG 1 cut(s) 294
HinfI GANTC 4 cut(s) 50, 139, 184, 208
HpaII CCGG 3 cut(s) 123, 177, 287
Hpy188I TCNGA 4 cut(s) 26, 49, 138, 189
Hpy99I CGWCG 2 cut(s) 66, 97
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 195
HpyF3I CTNAG 2 cut(s) 188, 210
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 1 cut(s) 294
Kzo9I GATC 2 cut(s) 238, 264
LmnI GCTCC 2 cut(s) 94, 135
LpnPI CCDG 8 cut(s) 23, 136, 190, 218, 239, 242, 245, 265
LweI GCATC 3 cut(s) 67, 90, 204
MaeII ACGT 1 cut(s) 69
MalI GATC 2 cut(s) 240, 266
MboI GATC 2 cut(s) 238, 264
MboII GAAGA 3 cut(s) 85, 88, 153
MhlI GDGCHC 2 cut(s) 24, 132
MluCI AATT 1 cut(s) 13
MlyI GAGTC 2 cut(s) 148, 202
MnlI CCTC 3 cut(s) 144, 161, 183
MroXI GAANNNNTTC 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 279
MspI CCGG 3 cut(s) 123, 177, 287
NdeII GATC 2 cut(s) 238, 264
NlaIII CATG 1 cut(s) 294
NlaIV GGNNCC 1 cut(s) 285
NspV TTCGAA 1 cut(s) 164
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 111
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 50, 184
PleI GAGTC 2 cut(s) 147, 202
PmaCI CACGTG 1 cut(s) 70
PmlI CACGTG 1 cut(s) 70
PpsI GAGTC 2 cut(s) 147, 202
Ppu21I YACGTR 1 cut(s) 70
Psp124BI GAGCTC 2 cut(s) 24, 132
PspCI CACGTG 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 279
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SacI GAGCTC 2 cut(s) 24, 132
Sau3AI GATC 2 cut(s) 238, 264
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 148, 202
SduI GDGCHC 2 cut(s) 24, 132
SfaNI GCATC 3 cut(s) 67, 90, 204
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 13
SsiI CCGC 1 cut(s) 7
SstI GAGCTC 2 cut(s) 24, 132
TaiI ACGT 1 cut(s) 72
TaqI TCGA 3 cut(s) 95, 105, 164
TaqII GACCGA 2 cut(s) 143, 239
TasI AATT 1 cut(s) 13
TfiI GAWTC 2 cut(s) 50, 184
TspGWI ACGGA 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.