Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008066

Physical Location & Seq

Genomic Coordinates Reverse (-)

699415 .. 708528

Gene Structure 9114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG007900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4029 bp

ATGGAATCACCTGTTGGAGGTGTGAGGCAAACATCTGTGATAGTTGTTACATTGGAGACTGGTGAAGTATATGTGATTGCGAGTTTGTCGTCTAGGCTTGATACTCAGGTCATATATGTTGATCCTACTACTGGAGCACTTCGCTACAATGCGAAGCCAGGATTTGATGTTTTTAAATCCGAAAAGGAAGCTTTGAATTACATTACAAACGGTTCGGAGTGGTTGTGTAGGAGCACTACCTATGCCCGTGCAATATTGGGCTATGCTGCTTTGGGCAGCTTTGGTTTGCTGCTTGTGGCTACCAAGTTGACTGCTACTGTTCCGAATCTGCCTGGCGGAGGGTCTGTGTATACTGTGACTGAGAGCCAATGGATCAAGATTTTGCTTCAGAATCCACAGCCCCAGGGGAAAGGAGAAGTGAAGAATGTTAATGAATTGACTGATATGGACATTGATGGGAAGCATTACTTTTGTGAGGCAAGGGACATCACTCGGCCATTTCCTAGCCGTATGTGCTTGCGTGAACCTGACGATGAATTCGTTTGGAATGCTTGGTTCTCGATGCCTTTCAAAAACATTGGGCTTCCGCACCATTGTGTCACTCTTCTTCAGGGTTTTGCAGAATGTCGAGGTTTTGGATCCTCAGGGAATCTGGAAGGAGTTGTTGCTCTCATAGCTCGTCGTAGCAGGCTGCATCCTGGTACTCGATACTTGGCTAGGGGATTAAATTCATGTTATAGCACAGGAAACGAAGTGGAGTGTGAGCAACTTGTATGGGTCCCTAGAAGGGCTGGCCAAACTGTTCCTTTCAACACGTATGTCTGGCGGCGGGGGACAATTCCAATCTGGTGGGGTGCAGAGTTAAAGATCACTGCTGCCGAAGCAGAAATCTATGTTTCAGACCGCGATCCTTATAAAGGGAGTGCAGATTACTACCAGAGGTTGAGTAAGAGGTATGATGCACGGAATTTAGATGTAGCTGTTGGGGGGACTCAGAATCGAAAAGCATCAGTTCCAATTGTATGCATCAACTTGCTTAGAAATGGAGAAGGAAAGTCGGAATCCATTTTAGTACAGCATTTTGAGGAATCTTTAAACTACATCAGATCCACAGGAAAACTTCCTTATACGCGAATTCCTTTAATAAATTATGACTGGCATGCAAGTATAAAGTTAAAAGGCGAACAGCAAACCATTGAAGGATTATGGAGACATCTAAAAGCACCCACTGTATCTATAGCCATTTCTGAAGGAGATTATTTGCCTTCACGAGACAGAATTAAGGACTGCAGAGGAGAAATTATCTACAATGATGACTTTGAAGGTGCTTTCTGCTTGAGATCCCATCAAAATGGTGTAATACGTTTCAACTGTGCTGATTCTTTGGATAGAACAAATGCTGCAAGTTATTTTGGCTCTCTCCAGGTTTTTGTGGAGCAGTGTAGGCGGCTTGGTATATCGCTTGACAGTGATTTGGCATTTGGTTATCCGTCAATGACTAATTATGCCGGATATACAGCTCCTTTGCCACCAGGCTGGGAGAAGAGGTCGGATGCAGTAACAGGGAAAACATACTACATTGATCACAATACTAGGACCACAACATGGATGCATCCATGTCCCGATAAACCTTGGAAAAGATTTGATATGTCATTTGAGGAATTCAAGAGGTCAACAATTTTATCTCCAGTATCCACGCTTGCAGATCTTTTTCTGCTCGCTGGTGATATTCATGCAACACTTTATACGGGCTCTAAAGCCATGCATAGTCAAATCCTCAGCATTTTCAATGAAGATGCTGGAAAGTTTAAACAATTTTCTGCAGCACAGAATATGAAAATAACTTTGCAGAGACGGTATAAAAATGCAGTTGTAGACAGCTCTCGTCAAAAGCAACTGGAAATGTTCCTTGGAATGAGATTATTCAAGCATCTTCCATCAGTTTCTTTTCACCCTCTAAATGTAGTCTCTCGACCATCTGGTTTCTTCCTTAAGCCAGTTGCTAACATGTTTCCAAGTTCCAATGGTGAAGCCAGTCTTCTGAGTTTCAAAAGAAAAGACCTAATCTGGGTTTGCCCACAAGCTGCAGATGTGGTTGAACTTTTTATCTATCTAGGTGAGCCTTGCCATGTATGTCAGCTTCTTCTCACAGTATCCCATGGCGCAGATGACTCGACCTATCCATCAACAGTTGATGTAAGGACGGGCCGCTGTTTAGATGGGCTAAAACTGGTCTTGGAGGGTGCTTCGATCCCTCACTGTGTAAATGGAACAAACCTTGTGATACCCATACCGGGGCCAATTAGTCCAGAGGATATGGCTATAACAGGAGCTGGTGCACGCCTTCATGCTCAAGATATATCTACCCTTCCATTATTGTATGATTTTGAAGAATTGGAAGGAGAACTTGACTTCCTTACTCGTGTAGTTGCCCTTACATTTTATCCCGCTGTCTCTGGAAGAACCCCTATCACTCTTGGTGAGATAGAAGTCCTTGGAGTTTCTCTTCCTTGGAAGGGTGTATTTAATAAAGAAGGCCCTGGTGCAAGATTACCTGAACAGGCTAAAAACTTTCAGAATGAAACCAAACCATCTTTTTCTCGTTCAGATACCAATCCATTTTCTGGTGCTTCATCTAATGATGTGCCACCACCAGTGCAACCAAGTGTGTCCGCAGACAATTTGGTTGACCTGTTGACTGGAGAGGTCATCCTTTCAGAACAGATTGCTCAGCCAGTGATAGGAAATGCTGTGGATAAGGGAGGTGACTTGCTTGATTTTTTAGACCAAGCTGTTGTTGAATATCATGGTGCTCAAAATGATCATAAATTGTCTTCATCACACGATGGTAGATCTTCAGATAGCAGTTCCCAGCAGTACATTGATCGATTAAAATCACTTACTGGACCACATATGGAAAGAAAACTAGACTTCATGGAAGCTATGAAACTTGAAATTGAGCGACTCCGGCTGAATATTTCTGCTGCTGAAAGGGATAGAGCTTTATTATCAATTGGAACTGATCCTGCTACCATAAATCCTAATGTGTTACTTGATGAACGTTACATGGGAAGGTTGTGCAGAGTTGCAAACTCCCTTGCTCTTCTTGGACAAGCGTCCTTGGAAGACAGAATTACATCTGCTATTGGTCTTGAGACTACTGATGACAATGTGATAGATTTTTGGAATATAAGTAAAATTGGGGAGTGTTGTTATGGGGGCATGTGTGAGGTGCATGCTGAAACTGATCCACGTACAAGTAAATCCTTTTCAGAATCATCAGGTGGAGGTTCTCCTTCGATCTTGTTATGTTCTCAATGTCAAAGGAAAGTTTGTAAAGTTTGTTGTGCTGGGAGAGGAGCCCTTCTGGTTTCAGGCTATGGCTCAAGGGAGGCCACGAATTACAATGGTGTGGTAAGGCAGGGGGGATCAAGCCATGGTAGCCAGGTTGATATCTCTACAAATCGTTCAGTCGTGCTTGATGGTGTTGTTTGCAAACGATGCTGCCATGAGATTGTGCTTGATGCTTTGATATTGGACTACGTTAGGGTTTTGTTAAGCATGAGGAGAAGTTCCCGTGCAGATGCTTCTGCGCATGAAGCCTTGAACCAGGTGACTGGATTTTCCTTAAAAGATGGTCTTTCTGAGAGTAATCAGTCTTCTGGAAAGAGATCCATTAAATCTCTGCGACAAGTACTTGACGGAGAGGAATCCCTTGCTGAGTTTCCATTCGCCAGCTTCTTACACTCGGTTGAAACGGCTACTGATTCAGCACCACTCTTGTCATTGCTTGCTCCTCTTGATTGTGGATCACGGCATTCTTACTGGAAAGCTCCTCCTAGTACAACCTCTGTTGAATTCATTATTGTTCTTGGTACCCTTTCTGATGTCAGTGGGGTTTCTTTGCTTATTAGTCCATGTGGTTACTCCGAGGCTGAAGCTCCCACCGTAAGTCTACTTCTATATATAGTCTCTTATATTTTTAAATTAGGTATATGTAACGCCATCTTTGATATGTATGCCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syja_N WW

Protein Analysis

1342

Amino Acids

147.68

Weight (kDa)

5.98

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	84 - 390	3.7e-39	SacI homology domain
WW	PF00397	509 - 539	8.5e-12	WW domain
SAC9_GBDL_1st	PF24790	653 - 838	1.8e-98	SAC9 first GBDL domain
SAC9_C8D	PF24791	1066 - 1176	2.1e-20	SAC9 C8D domain
SAC9_GBDL_2nd	PF24789	1236 - 1319	3.8e-38	SAC9 second GBDL domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59770 AT3G59770 AT3G59770 AT3G59770
fragaria_vesca	FvH4_1g00530 FvH4_1g00530
malus_domestica	MD02G1004400.v1.1 MD15G1148100.v1.1
prunus_persica	Prupe.7G266700_v2.0.a1 Prupe.7G266700_v2.0.a1 Prupe.7G266700_v2.0.a1 Prupe.7G266700_v2.0.a1
pyrus_communis	pycom02g00290 pycom15g13240
rosa_chinensis	RchiOBHm_Chr2g0085161
rosa_laevigata	RLG00000015661
rosa_multiflora	Rmu_sc0008647.1_g000009
rosa_roxburghii	Rroxscaffold_2G00155600
rosa_rugosa	Rorug01G0458000
rosa_samantha	Rh2AG006300 Rh2BG007100 Rh2CG007900 Rh2DG008100
rosa_wichuraiana	Rw2G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
Acc16I	TGCGCA	1 cut(s)	3594
Acc65I	GGTACC	1 cut(s)	3875
AccB1I	GGYRCC	1 cut(s)	3875
AccB7I	CCANNNNNTGG	2 cut(s)	1605, 2624
AccI	GTMKAC	3 cut(s)	350, 1875, 3955
AccII	CGCG	2 cut(s)	906, 1132
AciI	CCGC	9 cut(s)	336, 587, 826, 829, 904, 1447, 2209, 2448, 2673
AclI	AACGTT	1 cut(s)	3061
AcoI	YGGCCR	2 cut(s)	494, 793
AcsI	RAATTY	6 cut(s)	536, 727, 967, 1134, 1661, 3857
AcuI	CTGAAG	5 cut(s)	371, 593, 1269, 2841, 3957
AfaI	GTAC	7 cut(s)	703, 1074, 2879, 3256, 3696, 3844, 3877
AflII	CTTAAG	1 cut(s)	1991
AflIII	ACRYGT	2 cut(s)	813, 2007
AjnI	CCWGG	9 cut(s)	157, 331, 402, 697, 1422, 1531, 2539, 3444, 3609
AjuI	GAANNNNNNNTTGG	3 cut(s)	29, 1893, 1925
AleI	CACNNNNGTG	1 cut(s)	594
AloI	GAACNNNNNNTCC	2 cut(s)	2397, 2429
Alw21I	GWGCWC	4 cut(s)	139, 236, 2341, 2815
Alw26I	GTCTC	8 cut(s)	50, 1204, 1266, 1846, 1972, 2458, 3149, 3976
Alw44I	GTGCAC	1 cut(s)	2337
AlwNI	CAGNNNCTG	1 cut(s)	2333
AoxI	GGCC	6 cut(s)	494, 793, 2206, 2297, 2536, 3393
ApaLI	GTGCAC	1 cut(s)	2337
ApoI	RAATTY	6 cut(s)	536, 727, 967, 1134, 1661, 3857
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
Asp718I	GGTACC	1 cut(s)	3875
AspLEI	GCGC	2 cut(s)	2165, 3595
AspS9I	GGNCC	6 cut(s)	778, 1596, 2206, 2297, 2537, 2906
AsuC2I	CCSGG	1 cut(s)	2295
AsuHPI	GGTGA	8 cut(s)	74, 1736, 1943, 2039, 2129, 2492, 2777, 3625
AvaII	GGWCC	3 cut(s)	778, 1596, 2906
AxyI	CCTNAGG	1 cut(s)	643
BaeGI	GKGCMC	1 cut(s)	2341
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BalI	TGGCCA	1 cut(s)	795
BamHI	GGATCC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	3875
BanII	GRGCYC	2 cut(s)	1754, 3364
BarI	GAAGNNNNNNTAC	6 cut(s)	2124, 2156, 3643, 3675, 3942, 3974
BauI	CACGAG	2 cut(s)	1269, 2421
BbsI	GAAGAC	4 cut(s)	2030, 2826, 3132, 3651
Bbv12I	GWGCWC	4 cut(s)	139, 236, 2341, 2815
BbvCI	CCTCAGC	1 cut(s)	1778
BceAI	ACGGC	3 cut(s)	492, 3774, 3830
BcgI	CGANNNNNNTGC	2 cut(s)	2154, 2188
BciT130I	CCWGG	9 cut(s)	159, 333, 404, 699, 1424, 1533, 2541, 3446, 3611
BciVI	GTATCC	2 cut(s)	1702, 2164
BclI	TGATCA	2 cut(s)	1582, 2821
BcnI	CCSGG	1 cut(s)	2295
BcoDI	GTCTC	8 cut(s)	50, 1204, 1266, 1846, 1972, 2458, 3149, 3976
BfaI	CTAG	8 cut(s)	93, 504, 717, 783, 1593, 2114, 2927, 3840
BfmI	CTRYAG	4 cut(s)	1236, 1288, 1821, 2085
BfrI	CTTAAG	1 cut(s)	1991
BfuI	GTATCC	2 cut(s)	1702, 2164
BglII	AGATCT	2 cut(s)	1705, 2852
BlpI	GCTNAGC	1 cut(s)	2730
BmcAI	AGTACT	1 cut(s)	3696
Bme18I	GGWCC	3 cut(s)	778, 1596, 2906
BmgT120I	GGNCC	6 cut(s)	778, 1596, 2206, 2297, 2537, 2906
BmiI	GGNNCC	6 cut(s)	640, 779, 780, 2298, 3361, 3877
BoxI	GACNNNNGTC	1 cut(s)	3115
BpiI	GAAGAC	4 cut(s)	2030, 2826, 3132, 3651
BpmI	CTGGAG	4 cut(s)	153, 1406, 1671, 2721
Bpu10I	CCTNAGC	1 cut(s)	1778
Bpu1102I	GCTNAGC	1 cut(s)	2730
BpuEI	CTTGAG	4 cut(s)	1357, 2337, 3173, 3370
BpuMI	CCSGG	1 cut(s)	2295
Bsa29I	ATCGAT	1 cut(s)	2887
BsaAI	YACGTR	2 cut(s)	816, 3254
BsaBI	GATNNNNATC	2 cut(s)	2613, 2893
BsaXI	ACNNNNNCTCC	6 cut(s)	209, 239, 330, 360, 1532, 1562
Bse21I	CCTNAGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	3785
Bse8I	GATNNNNATC	2 cut(s)	2613, 2893
BseBI	CCWGG	9 cut(s)	159, 333, 404, 699, 1424, 1533, 2541, 3446, 3611
BseCI	ATCGAT	1 cut(s)	2887
BseGI	GGATG	5 cut(s)	694, 1558, 1612, 1614, 2709
BseJI	GATNNNNATC	2 cut(s)	2613, 2893
BseMI	GCAATG	1 cut(s)	3785
BseMII	CTCAG	9 cut(s)	119, 351, 657, 1007, 1792, 2033, 2744, 3636, 3711
BseRI	GAGGAG	5 cut(s)	1308, 3372, 3580, 3786, 3825
BseSI	GKGCMC	1 cut(s)	2341
BseYI	CCCAGC	3 cut(s)	1536, 2871, 3350
BsgI	GTGCAG	4 cut(s)	876, 945, 3100, 3600
Bsh1236I	CGCG	2 cut(s)	906, 1132
BshFI	GGCC	6 cut(s)	496, 795, 2208, 2299, 2538, 3395
BshNI	GGYRCC	1 cut(s)	3875
BshVI	ATCGAT	1 cut(s)	2887
BsiHKAI	GWGCWC	4 cut(s)	139, 236, 2341, 2815
BsiSI	CCGG	3 cut(s)	1509, 2294, 2968
BslFI	GGGAC	5 cut(s)	497, 764, 847, 1003, 1605
BsmAI	GTCTC	8 cut(s)	50, 1204, 1266, 1846, 1972, 2458, 3149, 3976
BsmBI	CGTCTC	1 cut(s)	1846
BsmFI	GGGAC	5 cut(s)	497, 764, 847, 1003, 1605
BsmI	GAATGC	2 cut(s)	553, 3817
BsnI	GGCC	6 cut(s)	496, 795, 2208, 2299, 2538, 3395
Bsp1286I	GDGCHC	6 cut(s)	139, 236, 1754, 2341, 2815, 3364
Bsp1720I	GCTNAGC	1 cut(s)	2730
Bsp19I	CCATGG	2 cut(s)	2158, 3436
BspACI	CCGC	9 cut(s)	336, 587, 826, 829, 904, 1447, 2209, 2448, 2673
BspANI	GGCC	6 cut(s)	496, 795, 2208, 2299, 2538, 3395
BspCNI	CTCAG	9 cut(s)	118, 352, 656, 1006, 1791, 2034, 2743, 3637, 3712
BspDI	ATCGAT	1 cut(s)	2887
BspFNI	CGCG	2 cut(s)	906, 1132
BspLI	GGNNCC	6 cut(s)	640, 779, 780, 2298, 3361, 3877
BspMAI	CTGCAG	3 cut(s)	1292, 1825, 2089
BspQI	GCTCTTC	1 cut(s)	3108
BspT107I	GGYRCC	1 cut(s)	3875
BspTI	CTTAAG	1 cut(s)	1991
BsrDI	GCAATG	1 cut(s)	3785
BssNAI	GTATAC	1 cut(s)	351
BssSI	CACGAG	2 cut(s)	1269, 2421
BssT1I	CCWWGG	7 cut(s)	1631, 1909, 2158, 2494, 2510, 3120, 3436
Bst1107I	GTATAC	1 cut(s)	351
Bst2BI	CACGAG	2 cut(s)	1269, 2421
Bst2UI	CCWGG	9 cut(s)	159, 333, 404, 699, 1424, 1533, 2541, 3446, 3611
Bst6I	CTCTTC	4 cut(s)	609, 1538, 2511, 3108
BstAFI	CTTAAG	1 cut(s)	1991
BstAPI	GCANNNNNTGC	1 cut(s)	3501
BstBAI	YACGTR	2 cut(s)	816, 3254
BstDSI	CCRYGG	2 cut(s)	2158, 3436
BstENI	CCTNNNNNAGG	3 cut(s)	15, 336, 915
BstF5I	GGATG	5 cut(s)	694, 1558, 1612, 1614, 2709
BstFNI	CGCG	2 cut(s)	906, 1132
BstHHI	GCGC	2 cut(s)	2165, 3595
BstMAI	GTCTC	8 cut(s)	50, 1204, 1266, 1846, 1972, 2458, 3149, 3976
BstMWI	GCNNNNNNNGC	8 cut(s)	513, 674, 881, 1444, 2968, 3441, 3501, 3599
BstNI	CCWGG	9 cut(s)	159, 333, 404, 699, 1424, 1533, 2541, 3446, 3611
BstNSI	RCATGY	4 cut(s)	1163, 2011, 3226, 3239
BstPAI	GACNNNNGTC	1 cut(s)	3115
BstSFI	CTRYAG	4 cut(s)	1236, 1288, 1821, 2085
BstSLI	GKGCMC	1 cut(s)	2341
BstUI	CGCG	2 cut(s)	906, 1132
BstV2I	GAAGAC	4 cut(s)	2030, 2826, 3132, 3651
BstX2I	RGATCY	6 cut(s)	638, 1106, 1340, 1705, 2852, 3671
BstXI	CCANNNNNNTGG	4 cut(s)	849, 1352, 1536, 3617
BstYI	RGATCY	6 cut(s)	638, 1106, 1340, 1705, 2852, 3671
BstZ17I	GTATAC	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	2887
Bsu36I	CCTNAGG	1 cut(s)	643
BsuI	GTATCC	2 cut(s)	1702, 2164
BsuRI	GGCC	6 cut(s)	496, 795, 2208, 2299, 2538, 3395
BsuTUI	ATCGAT	1 cut(s)	2887
BtgI	CCRYGG	2 cut(s)	2158, 3436
BtsCI	GGATG	5 cut(s)	694, 1558, 1612, 1614, 2709
BtsI	GCAGTG	2 cut(s)	870, 1445
BtsIMutI	CAGTG	8 cut(s)	870, 1227, 1445, 1474, 2257, 2661, 2742, 3898
CaiI	CAGNNNCTG	1 cut(s)	2333
CfoI	GCGC	2 cut(s)	2165, 3595
Cfr13I	GGNCC	6 cut(s)	778, 1596, 2206, 2297, 2537, 2906
ClaI	ATCGAT	1 cut(s)	2887
CseI	GACGC	1 cut(s)	3105
CsiI	ACCWGGT	1 cut(s)	3609
Csp6I	GTAC	7 cut(s)	702, 1073, 2878, 3255, 3695, 3843, 3876
CviQI	GTAC	7 cut(s)	702, 1073, 2878, 3255, 3695, 3843, 3876
DraI	TTTAAA	4 cut(s)	175, 1095, 1810, 3985
EaeI	YGGCCR	2 cut(s)	494, 793
Eam1104I	CTCTTC	4 cut(s)	609, 1538, 2511, 3108
EarI	CTCTTC	4 cut(s)	609, 1538, 2511, 3108
EciI	GGCGGA	1 cut(s)	351
Eco130I	CCWWGG	7 cut(s)	1631, 1909, 2158, 2494, 2510, 3120, 3436
Eco24I	GRGCYC	2 cut(s)	1754, 3364
Eco32I	GATATC	1 cut(s)	3454
Eco47I	GGWCC	3 cut(s)	778, 1596, 2906
Eco57I	CTGAAG	5 cut(s)	371, 593, 1269, 2841, 3957
Eco81I	CCTNAGG	1 cut(s)	643
EcoNI	CCTNNNNNAGG	3 cut(s)	15, 336, 915
EcoO109I	RGGNCCY	2 cut(s)	778, 2537
EcoRI	GAATTC	4 cut(s)	536, 1134, 1661, 3857
EcoRII	CCWGG	9 cut(s)	157, 331, 402, 697, 1422, 1531, 2539, 3444, 3609
EcoRV	GATATC	1 cut(s)	3454
EcoT14I	CCWWGG	7 cut(s)	1631, 1909, 2158, 2494, 2510, 3120, 3436
EcoT22I	ATGCAT	3 cut(s)	1028, 1614, 1767
EcoT38I	GRGCYC	2 cut(s)	1754, 3364
ErhI	CCWWGG	7 cut(s)	1631, 1909, 2158, 2494, 2510, 3120, 3436
Esp3I	CGTCTC	1 cut(s)	1846
FalI	AAGNNNNNCTT	8 cut(s)	452, 484, 2022, 2054, 2391, 2423, 3624, 3656
FaqI	GGGAC	5 cut(s)	497, 764, 847, 1003, 1605
FauI	CCCGC	2 cut(s)	822, 2455
FauNDI	CATATG	1 cut(s)	2913
FbaI	TGATCA	2 cut(s)	1582, 2821
FblI	GTMKAC	3 cut(s)	350, 1875, 3955
FokI	GGATG	5 cut(s)	681, 1565, 1599, 1621, 2696
FriOI	GRGCYC	2 cut(s)	1754, 3364
FspBI	CTAG	8 cut(s)	93, 504, 717, 783, 1593, 2114, 2927, 3840
FspI	TGCGCA	1 cut(s)	3594
GlaI	GCGC	2 cut(s)	2164, 3594
GsaI	CCCAGC	3 cut(s)	1540, 2875, 3354
GsuI	CTGGAG	4 cut(s)	153, 1406, 1671, 2721
HaeIII	GGCC	6 cut(s)	496, 795, 2208, 2299, 2538, 3395
HapII	CCGG	3 cut(s)	1509, 2294, 2968
HgaI	GACGC	1 cut(s)	3105
HhaI	GCGC	2 cut(s)	2165, 3595
Hin6I	GCGC	2 cut(s)	2163, 3593
HinP1I	GCGC	2 cut(s)	2163, 3593
HincII	GTYRAC	4 cut(s)	309, 1674, 2689, 2697
HindII	GTYRAC	4 cut(s)	309, 1674, 2689, 2697
HindIII	AAGCTT	1 cut(s)	189
HpaII	CCGG	3 cut(s)	1509, 2294, 2968
HphI	GGTGA	8 cut(s)	74, 1736, 1943, 2039, 2129, 2492, 2777, 3625
Hpy166II	GTNNAC	9 cut(s)	309, 351, 524, 1674, 1876, 2339, 2689, 2697, 3956
Hpy8I	GTNNAC	9 cut(s)	309, 351, 524, 1674, 1876, 2339, 2689, 2697, 3956
Hpy99I	CGWCG	1 cut(s)	684
HpyCH4IV	ACGT	5 cut(s)	815, 1363, 3061, 3253, 3543
HpyF10VI	GCNNNNNNNGC	8 cut(s)	513, 674, 881, 1444, 2968, 3441, 3501, 3599
HpySE526I	ACGT	5 cut(s)	815, 1363, 3061, 3253, 3543
HspAI	GCGC	2 cut(s)	2163, 3593
KflI	GGGWCCC	1 cut(s)	778
KpnI	GGTACC	1 cut(s)	3879
Ksp22I	TGATCA	2 cut(s)	1582, 2821
LguI	GCTCTTC	1 cut(s)	3108
LmnI	GCTCC	9 cut(s)	134, 231, 1435, 1525, 2330, 3359, 3799, 3838, 3946
MabI	ACCWGGT	1 cut(s)	3609
MaeI	CTAG	8 cut(s)	93, 504, 717, 783, 1593, 2114, 2927, 3840
MaeII	ACGT	5 cut(s)	815, 1363, 3061, 3253, 3543
MfeI	CAATTG	2 cut(s)	1017, 3012
MflI	RGATCY	6 cut(s)	638, 1106, 1340, 1705, 2852, 3671
MhlI	GDGCHC	6 cut(s)	139, 236, 1754, 2341, 2815, 3364
MlsI	TGGCCA	1 cut(s)	795
MluNI	TGGCCA	1 cut(s)	795
MlyI	GAGTC	3 cut(s)	985, 2165, 2958
MmeI	TCCRAC	2 cut(s)	1038, 1530
Mox20I	TGGCCA	1 cut(s)	795
Mph1103I	ATGCAT	3 cut(s)	1028, 1614, 1767
MscI	TGGCCA	1 cut(s)	795
MslI	CAYNNNNRTG	2 cut(s)	594, 1350
Msp20I	TGGCCA	1 cut(s)	795
MspA1I	CMGCKG	2 cut(s)	2211, 2450
MspCI	CTTAAG	1 cut(s)	1991
MspI	CCGG	3 cut(s)	1509, 2294, 2968
MssI	GTTTAAAC	1 cut(s)	1810
MunI	CAATTG	2 cut(s)	1017, 3012
Mva1269I	GAATGC	2 cut(s)	553, 3817
MvaI	CCWGG	9 cut(s)	159, 333, 404, 699, 1424, 1533, 2541, 3446, 3611
MvnI	CGCG	2 cut(s)	906, 1132
MwoI	GCNNNNNNNGC	8 cut(s)	513, 674, 881, 1444, 2968, 3441, 3501, 3599
NciI	CCSGG	1 cut(s)	2295
NcoI	CCATGG	2 cut(s)	2158, 3436
NdeI	CATATG	1 cut(s)	2913
NlaIV	GGNNCC	6 cut(s)	640, 779, 780, 2298, 3361, 3877
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	4 cut(s)	355, 598, 2765, 3613
NsbI	TGCGCA	1 cut(s)	3594
NsiI	ATGCAT	3 cut(s)	1028, 1614, 1767
NspI	RCATGY	4 cut(s)	1163, 2011, 3226, 3239
OliI	CACNNNNGTG	1 cut(s)	594
PaeI	GCATGC	2 cut(s)	1163, 3239
PasI	CCCWGGG	1 cut(s)	403
PciI	ACATGT	1 cut(s)	2007
PciSI	GCTCTTC	1 cut(s)	3108
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PctI	GAATGC	2 cut(s)	553, 3817
PflMI	CCANNNNNTGG	2 cut(s)	1605, 2624
PleI	GAGTC	3 cut(s)	985, 2165, 2958
PmeI	GTTTAAAC	1 cut(s)	1810
PpsI	GAGTC	3 cut(s)	985, 2165, 2958
Ppu21I	YACGTR	2 cut(s)	816, 3254
PpuMI	RGGWCCY	1 cut(s)	778
PscI	ACATGT	1 cut(s)	2007
PshAI	GACNNNNGTC	1 cut(s)	3115
PsiI	TTATAA	1 cut(s)	915
Psp1406I	AACGTT	1 cut(s)	3061
Psp5II	RGGWCCY	1 cut(s)	778
Psp6I	CCWGG	9 cut(s)	157, 331, 402, 697, 1422, 1531, 2539, 3444, 3609
PspFI	CCCAGC	3 cut(s)	1536, 2871, 3350
PspGI	CCWGG	9 cut(s)	157, 331, 402, 697, 1422, 1531, 2539, 3444, 3609
PspN4I	GGNNCC	6 cut(s)	640, 779, 780, 2298, 3361, 3877
PspPI	GGNCC	6 cut(s)	778, 1596, 2206, 2297, 2537, 2906
PspPPI	RGGWCCY	1 cut(s)	778
PstI	CTGCAG	3 cut(s)	1292, 1825, 2089
PstNI	CAGNNNCTG	1 cut(s)	2333
PsuI	RGATCY	6 cut(s)	638, 1106, 1340, 1705, 2852, 3671
RsaI	GTAC	7 cut(s)	703, 1074, 2879, 3256, 3696, 3844, 3877
RsaNI	GTAC	7 cut(s)	702, 1073, 2878, 3255, 3695, 3843, 3876
RseI	CAYNNNNRTG	2 cut(s)	594, 1350
SapI	GCTCTTC	1 cut(s)	3108
Sau96I	GGNCC	6 cut(s)	778, 1596, 2206, 2297, 2537, 2906
ScaI	AGTACT	1 cut(s)	3696
SchI	GAGTC	3 cut(s)	985, 2165, 2958
SduI	GDGCHC	6 cut(s)	139, 236, 1754, 2341, 2815, 3364
SexAI	ACCWGGT	1 cut(s)	3609
SfcI	CTRYAG	4 cut(s)	1236, 1288, 1821, 2085
SinI	GGWCC	3 cut(s)	778, 1596, 2906
SmiMI	CAYNNNNRTG	2 cut(s)	594, 1350
SmlI	CTYRAG	5 cut(s)	1336, 1991, 2352, 3152, 3385
SmoI	CTYRAG	5 cut(s)	1336, 1991, 2352, 3152, 3385
SphI	GCATGC	2 cut(s)	1163, 3239
SsiI	CCGC	9 cut(s)	336, 587, 826, 829, 904, 1447, 2209, 2448, 2673
SspI	AATATT	2 cut(s)	255, 2977
SspMI	CTAG	8 cut(s)	93, 504, 717, 783, 1593, 2114, 2927, 3840
StyI	CCWWGG	7 cut(s)	1631, 1909, 2158, 2494, 2510, 3120, 3436
TaiI	ACGT	5 cut(s)	818, 1366, 3064, 3256, 3546
TaqI	TCGA	9 cut(s)	560, 628, 706, 1000, 1972, 2174, 2249, 2887, 3299
TatI	WGTACW	4 cut(s)	1072, 2877, 3694, 3842
TauI	GCSGC	3 cut(s)	829, 1450, 2211
TscAI	CASTG	8 cut(s)	877, 1234, 1445, 1474, 2264, 2661, 2742, 3898
TseFI	GTSAC	4 cut(s)	355, 598, 2765, 3613
Tsp45I	GTSAC	4 cut(s)	355, 598, 2765, 3613
TspGWI	ACGGA	3 cut(s)	979, 1479, 3717
TspRI	CASTG	8 cut(s)	877, 1234, 1445, 1474, 2264, 2661, 2742, 3898
Van91I	CCANNNNNTGG	2 cut(s)	1605, 2624
Vha464I	CTTAAG	1 cut(s)	1991
VneI	GTGCAC	1 cut(s)	2337
VpaK11BI	GGWCC	3 cut(s)	778, 1596, 2906
XagI	CCTNNNNNAGG	3 cut(s)	15, 336, 915
XapI	RAATTY	6 cut(s)	536, 727, 967, 1134, 1661, 3857
XceI	RCATGY	4 cut(s)	1163, 2011, 3226, 3239
XmiI	GTMKAC	3 cut(s)	350, 1875, 3955
XspI	CTAG	8 cut(s)	93, 504, 717, 783, 1593, 2114, 2927, 3840
ZrmI	AGTACT	1 cut(s)	3696
Zsp2I	ATGCAT	3 cut(s)	1028, 1614, 1767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.