Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0014426

Physical Location & Seq

Genomic Coordinates Reverse (-)

7601453 .. 7605287

Gene Structure 3835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG092900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGGCTGCTTGTGCTTTGCTGGGTGACAATGGCGACCATGTCAGCGGCAATGGAAGCAATAACAACAACAACAACAACAACAGCAGTGCTAGCCACAGCCCATTGAACTCCAACAGCCAAGGAAGCAGCGTGGTCGAGCAGCAGAACCCGGTTCGGTCGAAAATGGTGAGGAAGAGAATGGCTTCCGAGATTGAAGTGCAGGCCACCACCAACACCAACTCAATCAGAATTGGCAGCAGCAACAATAACGGTGATAATTATATGAGGGTTTCGCGTAATCGGAGCGTTATGCTAAATCCAAACCCGACCCATGACAAAGTGAATATGGTCTCCAACTACTCCACCACTATGCTCAATCTACCAGTACCATCATCGTCCAACAATTTGACCACGCTCATGACGTCAGGAGGTGGTGGGGTTTTATCAACTGCTTCCGCTTCTTCTTCCCCTCCAAGCTGGGGTCCTATCGATCCCTTGTCGCTCCATCACCCGATTCACCAGACCCAGATCGCCGCAACCACTCCTCCTCCCGCCGTCTGCGGCTTTTCGGGGCTCCCTCTCTTCCCACCGGAAAGAACATCTCCTCCTAATCATACTAGCACCACGCTTTCTACCGTTATGGATCAGGACAGCTCCGCCACGGCCTGGATCGACGGCATCATAAAAGACCTCATCCACAGCTCCACCAACGTCTCCATTCCTCAGCTCATCCAGAACGTCCGAGAGATAATCTTCCCTTGCAATCCCAACCTCGCTTCGCTGCTCGAGTACCGCCTCCGCTCCATATCGGAGCCGCCCCCGCCTCCGATCCCACTCTTCAACAGAAGAAGAGAGCAAGGTCCCGGGCTGCAGCTGAATCTCGACTCTAACCCCTCCGGCATAAATGACGTCACTGTTTTCCCGTCTTCAACTACCAGCGGTCACTCTGCAGGTCATCACCATGTGATGAACCAGGAGTTGTTTTTGAACTGGGGAGACACCCTACCCCAACAACAGCAGCAACAACCCAACCCTACATCTTCCCCTACTTGCAACGAAAGCAACATCCAGGTTCAACAACACCACATTTCCCAGGTGGTTCACCCACAGCAACAAACACTAGATAAGCAGCAGCAGCAACAACAAAACTCTCCATCCCCGGCCGCCGAGTCTACACAAACCACCACTGCACCACCACCATCTACAACAGCCCCAGCCACGCCGTCCCCGGCGGTACTAATGCGAGAGAAGAAAGAAGAGATGCGGCAGCAGAAGCGAGACGAAGAGGGACTGCACCTGCTCACCTTACTCCTCCAATGCGCCGAAGCTGTGTCCGCAGATAACTTTGAAGAAGCAACCAAAATGTTACTCGAGATTTCCGAGCTCTCAACCCCGTTCGGCACCTCCGCGCAGCGCGTGGCGGCCTACTTCTCCGAGGCCATGTCAGCCAGACTAGTCAGCTCCTGTCTCGGATTCTACGCCTCCCTCCCGGTCTCCGCCGCTCCCATCACCCATTCCCAGAAGCTCGTCTCCGCCTTCCAAGTCTTCAACGGAATCAGCCCGTTCGTCAAGTTCTCCCACTTCACGGCCAACCAAGCCATCCAGGAAGCATTCGAAAGAGAAGACCGGGTGCACATAGTAGATCTCGACATAATGCAAGGCCTACAATGGCCGGGGCTGTTCCACATTCTCGCCTCCCGGCCCGGTGGGCCGCCCTACGTCCGCCTCACCGGTCTAGGAACCTCCATGGAGGCTCTAGAAGCCACCGGAAAACGCTTAACCGACTTCGCCGACAAGCTAGGGCTTCCGTTCGAGTTCTTTCCCTTGGCGGAGAAGGTAGGCAGTTTGGACCCTGACCGGCTCAACATAAGCAAGAGAGAGGCCGTCGCCGTCCACTGGCTGCAGCATTCTCTTTACGACGTCACCGGCTCCGACGCTAACACGCTCTGGCTTTTGCAGAGATTGGCACCAAAAGTAGTGACCGTAGTGGAGCAGGACTTGAGTCACGCCGGTTCATTTCTAGGGAGGTTTGTGGAGGCCATACACTACTACTCGGCCTTGTTCGACTCTTTGAGTGCAAGCTACGGTGAAGAAAGCGAGGAGAGGCACGTCGTGGAGCAGCAGCTTTTGTCGAGGGAGATTCGGAATGTTCTAGCCGTGGGAGGCCCGTCGAGGAGTGGAGAAGTGAAGTTCCATAACTGGAGGGAGAAGTTCCAGCAGAGTGGGTTCAGGGGGATTTCTTTGGCGGGAAATGCAGCGACTCAGGCAACCTTGCTGCTTGGGATGTTCCCTTCTGATGGGTACACGTTGGTGGAAGACAATGGGACTCTTAAGCTTGGTTGGAAGGACCTTTGTTTGCTGACTGCTTCGGCTTGGAGACCACCTTATCATGCTACTACCAACCCCAACCTTCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0008356 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009889 GO:0009956 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045165 GO:0045185 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051235 GO:0051252 GO:0051301 GO:0051457 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070727 GO:0072595 GO:0080090 GO:0090610 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

799

Amino Acids

87.1

Weight (kDa)

6.0

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	427 - 786	3.2e-130	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54220
fragaria_vesca	FvH4_6g09040
malus_domestica	MD04G1181500.v1.1 MD12G1196300.v1.1
prunus_persica	Prupe.6G300900_v2.0.a1
pyrus_communis	pycom04g16040 pycom12g18250
rosa_chinensis	RchiOBHm_Chr3g0459291
rosa_laevigata	RLG00000025096
rosa_multiflora	Rmu_sc0012999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00420330
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG092900 Rh3BG096000 Rh3CG097000 Rh3DG096600
rosa_wichuraiana	Rw3G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1284
AatII	GACGTC	3 cut(s)	404, 891, 1902
Acc36I	ACCTGC	2 cut(s)	920, 1284
AccB1I	GGYRCC	2 cut(s)	1379, 1945
AccB7I	CCANNNNNTGG	1 cut(s)	645
AccBSI	CCGCTC	2 cut(s)	780, 1481
AccI	GTMKAC	1 cut(s)	1151
AccII	CGCG	3 cut(s)	274, 1388, 1395
AclWI	GGATC	4 cut(s)	464, 630, 656, 802
AcoI	YGGCCR	3 cut(s)	1140, 1566, 1649
AcyI	GRCGYC	3 cut(s)	401, 888, 1899
AdeI	CACNNNGTG	2 cut(s)	943, 2092
AfaI	GTAC	4 cut(s)	366, 770, 1215, 2282
AfiI	CCNNNNNNNGG	5 cut(s)	458, 645, 1564, 1875, 2276
AflII	CTTAAG	1 cut(s)	2309
AflIII	ACRYGT	1 cut(s)	2283
AgeI	ACCGGT	1 cut(s)	1709
AgsI	TTSAA	8 cut(s)	106, 194, 820, 909, 967, 1055, 1328, 1528
AhlI	ACTAGT	1 cut(s)	1432
AjiI	CACGTC	1 cut(s)	2089
AjnI	CCWGG	5 cut(s)	644, 951, 1047, 1071, 1581
AleI	CACNNNNGTG	1 cut(s)	2288
AloI	GAACNNNNNNTCC	2 cut(s)	568, 600
Alw21I	GWGCWC	2 cut(s)	1365, 1614
Alw26I	GTCTC	8 cut(s)	334, 697, 969, 1251, 1451, 1477, 1513, 2350
Alw44I	GTGCAC	1 cut(s)	1610
AlwI	GGATC	4 cut(s)	464, 630, 656, 802
AlwNI	CAGNNNCTG	1 cut(s)	1443
Ama87I	CYCGRG	3 cut(s)	764, 842, 1349
ApaLI	GTGCAC	1 cut(s)	1610
AsiGI	ACCGGT	1 cut(s)	1709
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	3 cut(s)	1301, 1390, 1395
AspS9I	GGNCC	7 cut(s)	461, 839, 1680, 1688, 1828, 2144, 2326
AsuII	TTCGAA	1 cut(s)	1593
AsuNHI	GCTAGC	1 cut(s)	89
AvaI	CYCGRG	3 cut(s)	764, 842, 1349
AvaII	GGWCC	4 cut(s)	461, 839, 1828, 2326
BaeGI	GKGCMC	1 cut(s)	1614
BanI	GGYRCC	2 cut(s)	1379, 1945
BanII	GRGCYC	2 cut(s)	555, 1365
BbsI	GAAGAC	4 cut(s)	897, 1516, 1608, 2301
Bbv12I	GWGCWC	2 cut(s)	1365, 1614
BbvCI	CCTCAGC	1 cut(s)	702
BccI	CCATC	7 cut(s)	376, 492, 1141, 1186, 1493, 1586, 2270
BceAI	ACGGC	8 cut(s)	518, 657, 670, 1186, 1581, 1847, 1853, 2120
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	5 cut(s)	646, 953, 1049, 1073, 1583
BcoDI	GTCTC	8 cut(s)	334, 697, 969, 1251, 1451, 1477, 1513, 2350
BcuI	ACTAGT	1 cut(s)	1432
BfaI	CTAG	9 cut(s)	90, 597, 1100, 1433, 1715, 1736, 1778, 2000, 2132
BfmI	CTRYAG	3 cut(s)	848, 927, 1880
BfrI	CTTAAG	1 cut(s)	2309
BfuAI	ACCTGC	2 cut(s)	920, 1284
BglI	GCCNNNNNGGC	1 cut(s)	1687
BglII	AGATCT	1 cut(s)	1621
Bme18I	GGWCC	4 cut(s)	461, 839, 1828, 2326
BmeT110I	CYCGRG	3 cut(s)	764, 842, 1349
BmgBI	CACGTC	1 cut(s)	2089
BmgT120I	GGNCC	7 cut(s)	461, 839, 1680, 1688, 1828, 2144, 2326
BmiI	GGNNCC	9 cut(s)	462, 554, 792, 841, 1381, 1720, 1830, 1909, 1947
BmrI	ACTGGG	1 cut(s)	979
BmsI	GCATC	2 cut(s)	666, 1230
BmtI	GCTAGC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	979
BoxI	GACNNNNGTC	1 cut(s)	1980
BpiI	GAAGAC	4 cut(s)	897, 1516, 1608, 2301
BpmI	CTGGAG	1 cut(s)	2200
Bpu10I	CCTNAGC	1 cut(s)	702
Bpu14I	TTCGAA	1 cut(s)	1593
BpuEI	CTTGAG	1 cut(s)	1999
Bsa29I	ATCGAT	1 cut(s)	468
BsaHI	GRCGYC	3 cut(s)	401, 888, 1899
BsaI	GGTCTC	3 cut(s)	334, 1477, 2350
BsaWI	WCCGGW	3 cut(s)	568, 1709, 1745
BsaXI	ACNNNNNCTCC	6 cut(s)	508, 511, 538, 541, 568, 598
Bsc4I	CCNNNNNNNGG	5 cut(s)	458, 645, 1564, 1875, 2276
Bse118I	RCCGGY	4 cut(s)	1709, 1836, 1904, 1988
Bse1I	ACTGG	4 cut(s)	362, 974, 1880, 2183
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	5 cut(s)	646, 953, 1049, 1073, 1583
BseCI	ATCGAT	1 cut(s)	468
BseGI	GGATG	6 cut(s)	672, 708, 1044, 1133, 1578, 2268
BseLI	CCNNNNNNNGG	5 cut(s)	458, 645, 1564, 1875, 2276
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	716, 2255
BseNI	ACTGG	4 cut(s)	362, 974, 1880, 2183
BseRI	GAGGAG	6 cut(s)	513, 516, 573, 1280, 2093, 2167
BseSI	GKGCMC	1 cut(s)	1614
BseX3I	CGGCCG	1 cut(s)	1140
BseYI	CCCAGC	3 cut(s)	19, 456, 1192
BsgI	GTGCAG	3 cut(s)	218, 1152, 1256
Bsh1236I	CGCG	3 cut(s)	274, 1388, 1395
Bsh1285I	CGRYCG	2 cut(s)	158, 1143
BshNI	GGYRCC	2 cut(s)	1379, 1945
BshTI	ACCGGT	1 cut(s)	1709
BshVI	ATCGAT	1 cut(s)	468
BsiEI	CGRYCG	2 cut(s)	158, 1143
BsiHKAI	GWGCWC	2 cut(s)	1365, 1614
BsiHKCI	CYCGRG	3 cut(s)	764, 842, 1349
BslFI	GGGAC	4 cut(s)	825, 1189, 1281, 2317
BslI	CCNNNNNNNGG	5 cut(s)	458, 645, 1564, 1875, 2276
BsmAI	GTCTC	8 cut(s)	334, 697, 969, 1251, 1451, 1477, 1513, 2350
BsmBI	CGTCTC	3 cut(s)	697, 1251, 1513
BsmFI	GGGAC	4 cut(s)	825, 1189, 1281, 2317
BsmI	GAATGC	2 cut(s)	1589, 1885
Bso31I	GGTCTC	3 cut(s)	334, 1477, 2350
BsoBI	CYCGRG	3 cut(s)	764, 842, 1349
Bsp119I	TTCGAA	1 cut(s)	1593
Bsp1286I	GDGCHC	3 cut(s)	555, 1365, 1614
Bsp143I	GATC	6 cut(s)	469, 507, 622, 648, 807, 1621
Bsp19I	CCATGG	1 cut(s)	1725
BspCNI	CTCAG	2 cut(s)	715, 2254
BspDI	ATCGAT	1 cut(s)	468
BspFNI	CGCG	3 cut(s)	274, 1388, 1395
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	9 cut(s)	462, 554, 792, 841, 1381, 1720, 1830, 1909, 1947
BspMAI	CTGCAG	3 cut(s)	852, 931, 1884
BspMI	ACCTGC	2 cut(s)	920, 1284
BspOI	GCTAGC	1 cut(s)	93
BspPI	GGATC	4 cut(s)	464, 630, 656, 802
BspT104I	TTCGAA	1 cut(s)	1593
BspT107I	GGYRCC	2 cut(s)	1379, 1945
BspTI	CTTAAG	1 cut(s)	2309
BspTNI	GGTCTC	3 cut(s)	334, 1477, 2350
BsrBI	CCGCTC	2 cut(s)	780, 1481
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	4 cut(s)	1709, 1836, 1904, 1988
BsrI	ACTGG	4 cut(s)	362, 974, 1880, 2183
BssAI	RCCGGY	4 cut(s)	1709, 1836, 1904, 1988
BssMI	GATC	6 cut(s)	469, 507, 622, 648, 807, 1621
BssNI	GRCGYC	3 cut(s)	401, 888, 1899
BssT1I	CCWWGG	3 cut(s)	118, 1725, 1803
Bst2UI	CCWGG	5 cut(s)	646, 953, 1049, 1073, 1583
Bst4CI	ACNGT	5 cut(s)	251, 616, 895, 1963, 2066
Bst6I	CTCTTC	6 cut(s)	167, 566, 821, 823, 1230, 1257
BstACI	GRCGYC	3 cut(s)	401, 888, 1899
BstAFI	CTTAAG	1 cut(s)	2309
BstBI	TTCGAA	1 cut(s)	1593
BstC8I	GCNNGC	3 cut(s)	91, 201, 2059
BstDEI	CTNAG	2 cut(s)	702, 2241
BstDSI	CCRYGG	3 cut(s)	639, 1725, 2136
BstF5I	GGATG	6 cut(s)	672, 708, 1044, 1133, 1578, 2268
BstFNI	CGCG	3 cut(s)	274, 1388, 1395
BstHHI	GCGC	3 cut(s)	1301, 1390, 1395
BstKTI	GATC	6 cut(s)	472, 510, 625, 651, 810, 1624
BstMAI	GTCTC	8 cut(s)	334, 697, 969, 1251, 1451, 1477, 1513, 2350
BstMBI	GATC	6 cut(s)	469, 507, 622, 648, 807, 1621
BstMCI	CGRYCG	2 cut(s)	158, 1143
BstNI	CCWGG	5 cut(s)	646, 953, 1049, 1073, 1583
BstPAI	GACNNNNGTC	1 cut(s)	1980
BstSFI	CTRYAG	3 cut(s)	848, 927, 1880
BstSLI	GKGCMC	1 cut(s)	1614
BstUI	CGCG	3 cut(s)	274, 1388, 1395
BstV2I	GAAGAC	4 cut(s)	897, 1516, 1608, 2301
BstX2I	RGATCY	1 cut(s)	1621
BstXI	CCANNNNNNTGG	1 cut(s)	2201
BstYI	RGATCY	1 cut(s)	1621
BstZI	CGGCCG	1 cut(s)	1140
Bsu15I	ATCGAT	1 cut(s)	468
BsuTUI	ATCGAT	1 cut(s)	468
BtgI	CCRYGG	3 cut(s)	639, 1725, 2136
BtrI	CACGTC	1 cut(s)	2089
BtsCI	GGATG	6 cut(s)	672, 708, 1044, 1133, 1578, 2268
BtsI	GCAGTG	2 cut(s)	91, 1164
BtsIMutI	CAGTG	4 cut(s)	91, 891, 1164, 1873
BveI	ACCTGC	2 cut(s)	920, 1284
Cac8I	GCNNGC	3 cut(s)	91, 201, 2059
CaiI	CAGNNNCTG	1 cut(s)	1443
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	3 cut(s)	1301, 1390, 1395
Cfr10I	RCCGGY	4 cut(s)	1709, 1836, 1904, 1988
Cfr13I	GGNCC	7 cut(s)	461, 839, 1680, 1688, 1828, 2144, 2326
Cfr9I	CCCGGG	1 cut(s)	842
ClaI	ATCGAT	1 cut(s)	468
CseI	GACGC	1 cut(s)	1922
Csp6I	GTAC	4 cut(s)	365, 769, 1214, 2281
CspAI	ACCGGT	1 cut(s)	1709
CviAII	CATG	7 cut(s)	38, 311, 397, 941, 1420, 1726, 2369
CviQI	GTAC	4 cut(s)	365, 769, 1214, 2281
DdeI	CTNAG	2 cut(s)	702, 2241
DpnI	GATC	6 cut(s)	471, 509, 624, 650, 809, 1623
DpnII	GATC	6 cut(s)	469, 507, 622, 648, 807, 1621
DraIII	CACNNNGTG	2 cut(s)	943, 2092
EaeI	YGGCCR	3 cut(s)	1140, 1566, 1649
EagI	CGGCCG	1 cut(s)	1140
Eam1104I	CTCTTC	6 cut(s)	167, 566, 821, 823, 1230, 1257
EarI	CTCTTC	6 cut(s)	167, 566, 821, 823, 1230, 1257
EciI	GGCGGA	5 cut(s)	625, 1465, 1501, 1691, 1823
Ecl136II	GAGCTC	1 cut(s)	1363
EclXI	CGGCCG	1 cut(s)	1140
Eco130I	CCWWGG	3 cut(s)	118, 1725, 1803
Eco147I	AGGCCT	1 cut(s)	1641
Eco24I	GRGCYC	2 cut(s)	555, 1365
Eco31I	GGTCTC	3 cut(s)	334, 1477, 2350
Eco47I	GGWCC	4 cut(s)	461, 839, 1828, 2326
Eco52I	CGGCCG	1 cut(s)	1140
Eco53kI	GAGCTC	1 cut(s)	1363
Eco88I	CYCGRG	3 cut(s)	764, 842, 1349
EcoICRI	GAGCTC	1 cut(s)	1363
EcoO109I	RGGNCCY	3 cut(s)	461, 839, 2326
EcoRII	CCWGG	5 cut(s)	644, 951, 1047, 1071, 1581
EcoT14I	CCWWGG	3 cut(s)	118, 1725, 1803
EcoT38I	GRGCYC	2 cut(s)	555, 1365
ErhI	CCWWGG	3 cut(s)	118, 1725, 1803
Esp3I	CGTCTC	3 cut(s)	697, 1251, 1513
FaeI	CATG	7 cut(s)	41, 314, 400, 944, 1423, 1729, 2372
FaqI	GGGAC	4 cut(s)	825, 1189, 1281, 2317
FatI	CATG	7 cut(s)	37, 310, 396, 940, 1419, 1725, 2368
FauI	CCCGC	3 cut(s)	538, 807, 2218
FblI	GTMKAC	1 cut(s)	1151
FokI	GGATG	6 cut(s)	659, 695, 1031, 1120, 1565, 2275
FriOI	GRGCYC	2 cut(s)	555, 1365
FspBI	CTAG	9 cut(s)	90, 597, 1100, 1433, 1715, 1736, 1778, 2000, 2132
GlaI	GCGC	3 cut(s)	1300, 1389, 1394
GsaI	CCCAGC	3 cut(s)	23, 460, 1196
GsuI	CTGGAG	1 cut(s)	2200
HgaI	GACGC	1 cut(s)	1922
HhaI	GCGC	3 cut(s)	1301, 1390, 1395
Hin1I	GRCGYC	3 cut(s)	401, 888, 1899
Hin1II	CATG	7 cut(s)	41, 314, 400, 944, 1423, 1729, 2372
Hin6I	GCGC	3 cut(s)	1299, 1388, 1393
HinP1I	GCGC	3 cut(s)	1299, 1388, 1393
HindIII	AAGCTT	1 cut(s)	2312
Hpy166II	GTNNAC	5 cut(s)	1081, 1152, 1612, 1873, 2283
Hpy188III	TCNNGA	8 cut(s)	397, 405, 626, 712, 860, 1351, 1625, 1736
Hpy8I	GTNNAC	5 cut(s)	1081, 1152, 1612, 1873, 2283
Hpy99I	CGWCG	6 cut(s)	656, 1868, 1901, 1916, 2093, 2152
HpyAV	CCTTC	5 cut(s)	1525, 1807, 2280, 2317, 2399
HpyCH4III	ACNGT	5 cut(s)	251, 616, 895, 1963, 2066
HpyCH4IV	ACGT	8 cut(s)	401, 690, 717, 888, 1698, 1899, 2088, 2285
HpyF3I	CTNAG	2 cut(s)	702, 2241
HpySE526I	ACGT	8 cut(s)	401, 690, 717, 888, 1698, 1899, 2088, 2285
Hsp92I	GRCGYC	3 cut(s)	401, 888, 1899
Hsp92II	CATG	7 cut(s)	41, 314, 400, 944, 1423, 1729, 2372
HspAI	GCGC	3 cut(s)	1299, 1388, 1393
Kzo9I	GATC	6 cut(s)	469, 507, 622, 648, 807, 1621
LweI	GCATC	2 cut(s)	666, 1230
MaeI	CTAG	9 cut(s)	90, 597, 1100, 1433, 1715, 1736, 1778, 2000, 2132
MaeII	ACGT	8 cut(s)	401, 690, 717, 888, 1698, 1899, 2088, 2285
MaeIII	GTNAC	7 cut(s)	23, 889, 920, 1344, 1900, 1957, 1982
MalI	GATC	6 cut(s)	471, 509, 624, 650, 809, 1623
MbiI	CCGCTC	2 cut(s)	780, 1481
MboI	GATC	6 cut(s)	469, 507, 622, 648, 807, 1621
MflI	RGATCY	1 cut(s)	1621
MhlI	GDGCHC	3 cut(s)	555, 1365, 1614
MluCI	AATT	3 cut(s)	228, 256, 382
MlyI	GAGTC	6 cut(s)	857, 1157, 1990, 2039, 2233, 2299
MmeI	TCCRAC	5 cut(s)	135, 357, 402, 1935, 2300
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	2 cut(s)	1757, 2310
MslI	CAYNNNNRTG	4 cut(s)	347, 395, 939, 2288
MspA1I	CMGCKG	3 cut(s)	45, 853, 918
MspCI	CTTAAG	1 cut(s)	2309
MteI	GCGCNGCGC	1 cut(s)	1391
Mva1269I	GAATGC	2 cut(s)	1589, 1885
MvaI	CCWGG	5 cut(s)	646, 953, 1049, 1073, 1583
MvnI	CGCG	3 cut(s)	274, 1388, 1395
NcoI	CCATGG	1 cut(s)	1725
NdeII	GATC	6 cut(s)	469, 507, 622, 648, 807, 1621
NheI	GCTAGC	1 cut(s)	89
NlaIII	CATG	7 cut(s)	41, 314, 400, 944, 1423, 1729, 2372
NlaIV	GGNNCC	9 cut(s)	462, 554, 792, 841, 1381, 1720, 1830, 1909, 1947
NmeAIII	GCCGAG	2 cut(s)	1171, 2012
NmuCI	GTSAC	6 cut(s)	23, 889, 920, 1900, 1957, 1982
NspV	TTCGAA	1 cut(s)	1593
OliI	CACNNNNGTG	1 cut(s)	2288
PaeR7I	CTCGAG	2 cut(s)	764, 1349
PagI	TCATGA	1 cut(s)	396
PaqCI	CACCTGC	1 cut(s)	1284
PceI	AGGCCT	1 cut(s)	1641
PcsI	WCGNNNNNNNCGW	2 cut(s)	398, 1356
PctI	GAATGC	2 cut(s)	1589, 1885
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	5 cut(s)	493, 856, 1452, 1533, 2119
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	645
PfoI	TCCNGGA	1 cut(s)	1581
PinAI	ACCGGT	1 cut(s)	1709
PleI	GAGTC	6 cut(s)	857, 1156, 1989, 2039, 2233, 2299
PpsI	GAGTC	6 cut(s)	857, 1156, 1989, 2039, 2233, 2299
PpuMI	RGGWCCY	3 cut(s)	461, 839, 2326
PshAI	GACNNNNGTC	1 cut(s)	1980
Psp124BI	GAGCTC	1 cut(s)	1365
Psp5II	RGGWCCY	3 cut(s)	461, 839, 2326
Psp6I	CCWGG	5 cut(s)	644, 951, 1047, 1071, 1581
PspFI	CCCAGC	3 cut(s)	19, 456, 1192
PspGI	CCWGG	5 cut(s)	644, 951, 1047, 1071, 1581
PspN4I	GGNNCC	9 cut(s)	462, 554, 792, 841, 1381, 1720, 1830, 1909, 1947
PspPI	GGNCC	7 cut(s)	461, 839, 1680, 1688, 1828, 2144, 2326
PspPPI	RGGWCCY	3 cut(s)	461, 839, 2326
PspXI	VCTCGAGB	1 cut(s)	764
PstI	CTGCAG	3 cut(s)	852, 931, 1884
PstNI	CAGNNNCTG	1 cut(s)	1443
PsuI	RGATCY	1 cut(s)	1621
PsyI	GACNNNGTC	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	853
RsaI	GTAC	4 cut(s)	366, 770, 1215, 2282
RsaNI	GTAC	4 cut(s)	365, 769, 1214, 2281
RseI	CAYNNNNRTG	4 cut(s)	347, 395, 939, 2288
SacI	GAGCTC	1 cut(s)	1365
SaqAI	TTAA	2 cut(s)	1757, 2310
Sau3AI	GATC	6 cut(s)	469, 507, 622, 648, 807, 1621
Sau96I	GGNCC	7 cut(s)	461, 839, 1680, 1688, 1828, 2144, 2326
SchI	GAGTC	6 cut(s)	857, 1157, 1990, 2039, 2233, 2299
SduI	GDGCHC	3 cut(s)	555, 1365, 1614
SfaNI	GCATC	2 cut(s)	666, 1230
SfcI	CTRYAG	3 cut(s)	848, 927, 1880
SfiI	GGCCNNNNNGGCC	1 cut(s)	1687
Sfr274I	CTCGAG	2 cut(s)	764, 1349
SfuI	TTCGAA	1 cut(s)	1593
SinI	GGWCC	4 cut(s)	461, 839, 1828, 2326
SlaI	CTCGAG	2 cut(s)	764, 1349
SmaI	CCCGGG	1 cut(s)	844
SmiMI	CAYNNNNRTG	4 cut(s)	347, 395, 939, 2288
SmlI	CTYRAG	4 cut(s)	764, 1349, 1978, 2309
SmoI	CTYRAG	4 cut(s)	764, 1349, 1978, 2309
SpeI	ACTAGT	1 cut(s)	1432
Sse9I	AATT	3 cut(s)	228, 256, 382
SseBI	AGGCCT	1 cut(s)	1641
SspMI	CTAG	9 cut(s)	90, 597, 1100, 1433, 1715, 1736, 1778, 2000, 2132
SstI	GAGCTC	1 cut(s)	1365
StuI	AGGCCT	1 cut(s)	1641
StyI	CCWWGG	3 cut(s)	118, 1725, 1803
TaaI	ACNGT	5 cut(s)	251, 616, 895, 1963, 2066
TaiI	ACGT	8 cut(s)	404, 693, 720, 891, 1701, 1902, 2091, 2288
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	228, 256, 382
TauI	GCSGC	9 cut(s)	48, 515, 543, 796, 1145, 1246, 1403, 1481, 1693
TfiI	GAWTC	5 cut(s)	493, 856, 1452, 1533, 2119
Tru1I	TTAA	2 cut(s)	1757, 2310
Tru9I	TTAA	2 cut(s)	1757, 2310
TscAI	CASTG	4 cut(s)	91, 898, 1171, 1880
TseFI	GTSAC	6 cut(s)	23, 889, 920, 1900, 1957, 1982
Tsp45I	GTSAC	6 cut(s)	23, 889, 920, 1900, 1957, 1982
TspDTI	ATGAA	2 cut(s)	962, 1983
TspGWI	ACGGA	2 cut(s)	1545, 1776
TspMI	CCCGGG	1 cut(s)	842
TspRI	CASTG	4 cut(s)	91, 898, 1171, 1880
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	645
Vha464I	CTTAAG	1 cut(s)	2309
VneI	GTGCAC	1 cut(s)	1610
VpaK11BI	GGWCC	4 cut(s)	461, 839, 1828, 2326
XbaI	TCTAGA	1 cut(s)	1735
XhoI	CTCGAG	2 cut(s)	764, 1349
XmaI	CCCGGG	1 cut(s)	842
XmiI	GTMKAC	1 cut(s)	1151
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	9 cut(s)	90, 597, 1100, 1433, 1715, 1736, 1778, 2000, 2132
ZraI	GACGTC	3 cut(s)	402, 889, 1900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.