Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014426

Physical Location & Seq

Genomic Coordinates Reverse (-)

7688437 .. 7692193

Gene Structure 3757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG096000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2394 bp

ATGGCTGCTTGTGCTTTGCTGGGTGACAATGGCGACCTTGTCAGCGGCAATGGAAGCAATAACAACAACAACAACAGCAGTGCCAGCCACAGCCCATTGAACTCCAACAGCCAAGGCAGCAGCGTGGTCGAGCAGCAGAACCCGGTTCGGTCGAAAATGGTGAGGAAGAGAATGGCTTCCGAGATTGAAGTGCAGCCCACCAACAACACCAACCCAATCAGAATTGGCAGCAGCAACAATAACGGTGATAATTATATGAGGGTTTCGCGTAATCGGAGCGTTATGCTAAATCCAAACCCGACCCATGACAAAGTGAATATGGTCTCCAACTACTCCACCACTATGCTCAATCTACCAGTACCATCATCGTCCAACAATTTGACCACGCTCATGACGTCAGGAGGTGGTGGGGTTTTATCAACTGCTTCCGCTTCTTCTTCCCCTCCAAGCTGGGGTCCTATCGATCCCTTGTCGCTCCATCACCCGATTCACCATACCCAGATCGCAGCAACCACTCCTCCTCCCGCCGTCTGCGGCTTTTCGGGGCTCCCTCTCTTCCCACCGGAAAGAACGTCTCCTCCGACTCATACTAGCACCACGCTTTCTACCGTTATGGATCAAGACAGCTCCGCCACGGCCTGGATCGACGGCATCATAAAAGACCTCATCCACAGCTCCACCAACGTCTCCATTCCTCAGCTCATCCAGAACGTCCGAGAGATAATCTTCCCTTGCAATCCCAACCTCGCTTCGCTGCTCGAGTACCGCCTCCGCTCCATATCCGAGCCGCCCCCGCCTCCGATCCCACTCTTCAACAGAAGAAGAGACCAAGGTCCCGGGCTGCAGCTGAATCTCGACTCCAACTCCTCCGGCATAAATGACGTCACTGTTTTCCCGTCTTCAACCACCAGCGGTCACTCTGGTCATCACCATGTGATGAACCAGGAGTTGTTTTTGAACTGGGGAGACACCCTACCCCAACAACAGCAGCAACAACCCAACCCTACATCTTCCCCTACTTGCAACGAAAGCAACATCCAGGTTCAACAACACCACATTTCCCAGGTGGTTCACCCACAGCAACAAACACTAGATAAGCAGCAGCAGCAACAACAAAACTCTCCATCCCCGGCCGCCGAGTCTACGCAAACCACCACTGCACCACCGCCGCCATCTACAACAGCCCCAGCCACGCCGTCCCCGGCGGTACTAATGCGAGAGAAGAAAGAAGAGATGCGGCAGCAGAAGCGAGACGAAGAGGGACTGCACCTGCTCACCTTACTCCTCCAATGCGCCGAAGCTGTGTCCGCAGATAACTTTGAGGAAGCAACCAAAATGTTACTCGAGATTTCCGAGCTCTCAACCCCGTTCGGCACCTCCGCGCAGCGCGTGGCGGCCTACTTCTCCGAGGCCATGTCAGCCAGACTAGTCAGCTCCTGTCTCGGATTCTACGCCTCCCTCCCGGTCTCCGCCGCTCCCATCACCCATTCCCAGAAGCTCGTCTCCGCCTTCCAAGTCTTCAACGGAATCAGCCCGTTCGTCAAGTTCTCCCACTTCACGGCCAACCAAGCCATCCAGGAAGCATTCGAAAGAGAAGACCGGGTGCACATAGTAGATCTCGACATAATGCAAGGCCTACAATGGCCGGGGCTGTTCCACATTCTCGCCTCCCGGCCCGGTGGGCCGCCCTACGTCCGCCTCACCGGTCTAGGAACCTCCATGGACGCTCTAGAAGCCACCGGAAAACGCTTAACCGACTTCGCCGACAAGCTAGGGCTTCCGTTCGAGTTCTTTCCCGTGGCGGAGAAGGTAGGCAGTTTGGACCCTGACCGGCTCAACATAAGCAAGAGAGAGGCCGTCGCCGTCCACTGGCTGCAGCATTCTCTTTACGACGTCACCGGCTCCGACGCTAACACGCTCTGGCTTTTGCAGAGATTGGCACCAAAAGTAGTGACGGTAGTGGAGCAGGACTTGAGTCACGCCGGTTCATTTCTAGGGAGGTTTGTGGAGGCCATACACTACTACTCGGCCTTGTTCGACTCTTTGAGTGCAAGCTACGGTGAAGAAAGCGAGGAGAGGCACGTCGTGGAGCAGCAGCTATTGTCGAGGGAGATTCGGAATGTTCTAGCCGTGGGAGGCCCGTCGAGGAGTGGAGAAGTGAAGTTCCATAACTGGAGGGAGAAGTTCCAGCAGAGTGGGTTCAGGGGGATTTCTTTGGCGGGAAATGCAGCGACTCAGGCAACCTTGCTGCTTGGGATGTTCCCTTCTGATGGGTACACACTGGTGGAAGACAATGGGACTCTTAAGCTTGGTTGGAAAGACCTTTGTTTGCTGACTGCTTCGGCTTGGAGACCACCTTATCTTGCTACTACCAACCCCAACCTTCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0008356 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009889 GO:0009956 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045165 GO:0045185 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051235 GO:0051252 GO:0051301 GO:0051457 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070727 GO:0072595 GO:0080090 GO:0090610 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

797

Amino Acids

86.85

Weight (kDa)

5.97

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	425 - 784	2.2e-130	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54220
fragaria_vesca	FvH4_6g09040
malus_domestica	MD04G1181500.v1.1 MD12G1196300.v1.1
prunus_persica	Prupe.6G300900_v2.0.a1
pyrus_communis	pycom04g16040 pycom12g18250
rosa_chinensis	RchiOBHm_Chr3g0459291
rosa_laevigata	RLG00000025096
rosa_multiflora	Rmu_sc0012999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00420330
rosa_rugosa	Rorug03G0035100
rosa_samantha	Rh3AG092900 Rh3BG096000 Rh3CG097000 Rh3DG096600
rosa_wichuraiana	Rw3G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1278
AatII	GACGTC	3 cut(s)	398, 885, 1896
Acc36I	ACCTGC	1 cut(s)	1278
AccB1I	GGYRCC	2 cut(s)	1373, 1939
AccB7I	CCANNNNNTGG	1 cut(s)	639
AccBSI	CCGCTC	2 cut(s)	774, 1475
AccI	GTMKAC	1 cut(s)	1142
AccII	CGCG	3 cut(s)	268, 1382, 1389
AclWI	GGATC	4 cut(s)	458, 624, 650, 796
AcoI	YGGCCR	3 cut(s)	1131, 1560, 1643
AcyI	GRCGYC	3 cut(s)	395, 882, 1893
AdeI	CACNNNGTG	2 cut(s)	934, 2086
AfaI	GTAC	4 cut(s)	360, 764, 1209, 2276
AfiI	CCNNNNNNNGG	5 cut(s)	452, 639, 1558, 1869, 2270
AflII	CTTAAG	1 cut(s)	2303
AgeI	ACCGGT	1 cut(s)	1703
AgsI	TTSAA	7 cut(s)	100, 188, 814, 903, 958, 1046, 1522
AhlI	ACTAGT	1 cut(s)	1426
AjiI	CACGTC	1 cut(s)	2083
AjnI	CCWGG	5 cut(s)	638, 942, 1038, 1062, 1575
AleI	CACNNNNGTG	1 cut(s)	2282
AloI	GAACNNNNNNTCC	2 cut(s)	562, 594
Alw21I	GWGCWC	2 cut(s)	1359, 1608
Alw44I	GTGCAC	1 cut(s)	1604
AlwI	GGATC	4 cut(s)	458, 624, 650, 796
AlwNI	CAGNNNCTG	1 cut(s)	1437
Ama87I	CYCGRG	3 cut(s)	758, 836, 1343
ApaLI	GTGCAC	1 cut(s)	1604
AsiGI	ACCGGT	1 cut(s)	1703
Asp700I	GAANNNNTTC	1 cut(s)	175
AspLEI	GCGC	3 cut(s)	1295, 1384, 1389
AspS9I	GGNCC	6 cut(s)	455, 833, 1674, 1682, 1822, 2138
AsuII	TTCGAA	1 cut(s)	1587
AvaI	CYCGRG	3 cut(s)	758, 836, 1343
AvaII	GGWCC	3 cut(s)	455, 833, 1822
BaeGI	GKGCMC	1 cut(s)	1608
BanI	GGYRCC	2 cut(s)	1373, 1939
BanII	GRGCYC	2 cut(s)	549, 1359
BbsI	GAAGAC	4 cut(s)	891, 1510, 1602, 2295
Bbv12I	GWGCWC	2 cut(s)	1359, 1608
BbvCI	CCTCAGC	1 cut(s)	696
BccI	CCATC	7 cut(s)	370, 486, 1132, 1180, 1487, 1580, 2264
BceAI	ACGGC	8 cut(s)	512, 651, 664, 1180, 1575, 1841, 1847, 2114
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	5 cut(s)	640, 944, 1040, 1064, 1577
BcuI	ACTAGT	1 cut(s)	1426
BfaI	CTAG	8 cut(s)	591, 1091, 1427, 1709, 1730, 1772, 1994, 2126
BfmI	CTRYAG	2 cut(s)	842, 1874
BfrI	CTTAAG	1 cut(s)	2303
BfuAI	ACCTGC	1 cut(s)	1278
BglI	GCCNNNNNGGC	1 cut(s)	1681
BglII	AGATCT	1 cut(s)	1615
Bme18I	GGWCC	3 cut(s)	455, 833, 1822
BmeT110I	CYCGRG	3 cut(s)	758, 836, 1343
BmgBI	CACGTC	1 cut(s)	2083
BmgT120I	GGNCC	6 cut(s)	455, 833, 1674, 1682, 1822, 2138
BmiI	GGNNCC	8 cut(s)	456, 548, 835, 1375, 1714, 1824, 1903, 1941
BmrI	ACTGGG	1 cut(s)	970
BmsI	GCATC	2 cut(s)	660, 1224
BmuI	ACTGGG	1 cut(s)	970
BoxI	GACNNNNGTC	2 cut(s)	831, 1974
BpiI	GAAGAC	4 cut(s)	891, 1510, 1602, 2295
BpmI	CTGGAG	1 cut(s)	2194
Bpu10I	CCTNAGC	1 cut(s)	696
Bpu14I	TTCGAA	1 cut(s)	1587
BpuEI	CTTGAG	1 cut(s)	1993
Bsa29I	ATCGAT	1 cut(s)	462
BsaHI	GRCGYC	3 cut(s)	395, 882, 1893
BsaI	GGTCTC	4 cut(s)	328, 819, 1471, 2344
BsaWI	WCCGGW	3 cut(s)	562, 1703, 1739
BsaXI	ACNNNNNCTCC	8 cut(s)	502, 505, 532, 535, 562, 592, 848, 878
Bsc4I	CCNNNNNNNGG	5 cut(s)	452, 639, 1558, 1869, 2270
Bse118I	RCCGGY	4 cut(s)	1703, 1830, 1898, 1982
Bse1I	ACTGG	5 cut(s)	356, 965, 1874, 2177, 2286
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	5 cut(s)	640, 944, 1040, 1064, 1577
BseCI	ATCGAT	1 cut(s)	462
BseGI	GGATG	6 cut(s)	666, 702, 1035, 1124, 1572, 2262
BseLI	CCNNNNNNNGG	5 cut(s)	452, 639, 1558, 1869, 2270
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	710, 2249
BseNI	ACTGG	5 cut(s)	356, 965, 1874, 2177, 2286
BseRI	GAGGAG	7 cut(s)	507, 510, 567, 856, 1274, 2087, 2161
BseSI	GKGCMC	1 cut(s)	1608
BseX3I	CGGCCG	1 cut(s)	1131
BseYI	CCCAGC	3 cut(s)	19, 450, 1186
BsgI	GTGCAG	3 cut(s)	212, 1143, 1250
Bsh1236I	CGCG	3 cut(s)	268, 1382, 1389
Bsh1285I	CGRYCG	2 cut(s)	152, 1134
BshNI	GGYRCC	2 cut(s)	1373, 1939
BshTI	ACCGGT	1 cut(s)	1703
BshVI	ATCGAT	1 cut(s)	462
BsiEI	CGRYCG	2 cut(s)	152, 1134
BsiHKAI	GWGCWC	2 cut(s)	1359, 1608
BsiHKCI	CYCGRG	3 cut(s)	758, 836, 1343
BslFI	GGGAC	4 cut(s)	819, 1183, 1275, 2311
BslI	CCNNNNNNNGG	5 cut(s)	452, 639, 1558, 1869, 2270
BsmBI	CGTCTC	4 cut(s)	579, 691, 1245, 1507
BsmFI	GGGAC	4 cut(s)	819, 1183, 1275, 2311
BsmI	GAATGC	2 cut(s)	1583, 1879
Bso31I	GGTCTC	4 cut(s)	328, 819, 1471, 2344
BsoBI	CYCGRG	3 cut(s)	758, 836, 1343
Bsp119I	TTCGAA	1 cut(s)	1587
Bsp1286I	GDGCHC	3 cut(s)	549, 1359, 1608
Bsp143I	GATC	6 cut(s)	463, 501, 616, 642, 801, 1615
Bsp19I	CCATGG	1 cut(s)	1719
BspCNI	CTCAG	2 cut(s)	709, 2248
BspDI	ATCGAT	1 cut(s)	462
BspFNI	CGCG	3 cut(s)	268, 1382, 1389
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	8 cut(s)	456, 548, 835, 1375, 1714, 1824, 1903, 1941
BspMAI	CTGCAG	2 cut(s)	846, 1878
BspMI	ACCTGC	1 cut(s)	1278
BspPI	GGATC	4 cut(s)	458, 624, 650, 796
BspT104I	TTCGAA	1 cut(s)	1587
BspT107I	GGYRCC	2 cut(s)	1373, 1939
BspTI	CTTAAG	1 cut(s)	2303
BspTNI	GGTCTC	4 cut(s)	328, 819, 1471, 2344
BsrBI	CCGCTC	2 cut(s)	774, 1475
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	4 cut(s)	1703, 1830, 1898, 1982
BsrI	ACTGG	5 cut(s)	356, 965, 1874, 2177, 2286
BssAI	RCCGGY	4 cut(s)	1703, 1830, 1898, 1982
BssMI	GATC	6 cut(s)	463, 501, 616, 642, 801, 1615
BssNI	GRCGYC	3 cut(s)	395, 882, 1893
BssT1I	CCWWGG	3 cut(s)	112, 829, 1719
Bst2UI	CCWGG	5 cut(s)	640, 944, 1040, 1064, 1577
Bst4CI	ACNGT	5 cut(s)	245, 610, 889, 1957, 2060
Bst6I	CTCTTC	6 cut(s)	161, 560, 815, 817, 1224, 1251
BstACI	GRCGYC	3 cut(s)	395, 882, 1893
BstAFI	CTTAAG	1 cut(s)	2303
BstBI	TTCGAA	1 cut(s)	1587
BstC8I	GCNNGC	2 cut(s)	85, 2053
BstDEI	CTNAG	2 cut(s)	696, 2235
BstDSI	CCRYGG	4 cut(s)	633, 1719, 1797, 2130
BstF5I	GGATG	6 cut(s)	666, 702, 1035, 1124, 1572, 2262
BstFNI	CGCG	3 cut(s)	268, 1382, 1389
BstHHI	GCGC	3 cut(s)	1295, 1384, 1389
BstKTI	GATC	6 cut(s)	466, 504, 619, 645, 804, 1618
BstMBI	GATC	6 cut(s)	463, 501, 616, 642, 801, 1615
BstMCI	CGRYCG	2 cut(s)	152, 1134
BstNI	CCWGG	5 cut(s)	640, 944, 1040, 1064, 1577
BstPAI	GACNNNNGTC	2 cut(s)	831, 1974
BstSFI	CTRYAG	2 cut(s)	842, 1874
BstSLI	GKGCMC	1 cut(s)	1608
BstUI	CGCG	3 cut(s)	268, 1382, 1389
BstV2I	GAAGAC	4 cut(s)	891, 1510, 1602, 2295
BstX2I	RGATCY	1 cut(s)	1615
BstXI	CCANNNNNNTGG	1 cut(s)	2195
BstYI	RGATCY	1 cut(s)	1615
BstZI	CGGCCG	1 cut(s)	1131
Bsu15I	ATCGAT	1 cut(s)	462
BsuTUI	ATCGAT	1 cut(s)	462
BtgI	CCRYGG	4 cut(s)	633, 1719, 1797, 2130
BtrI	CACGTC	1 cut(s)	2083
BtsCI	GGATG	6 cut(s)	666, 702, 1035, 1124, 1572, 2262
BtsI	GCAGTG	2 cut(s)	85, 1155
BtsIMutI	CAGTG	5 cut(s)	85, 885, 1155, 1867, 2279
BveI	ACCTGC	1 cut(s)	1278
Cac8I	GCNNGC	2 cut(s)	85, 2053
CaiI	CAGNNNCTG	1 cut(s)	1437
CciI	TCATGA	1 cut(s)	390
CfoI	GCGC	3 cut(s)	1295, 1384, 1389
Cfr10I	RCCGGY	4 cut(s)	1703, 1830, 1898, 1982
Cfr13I	GGNCC	6 cut(s)	455, 833, 1674, 1682, 1822, 2138
Cfr9I	CCCGGG	1 cut(s)	836
ClaI	ATCGAT	1 cut(s)	462
CseI	GACGC	2 cut(s)	1733, 1916
Csp6I	GTAC	4 cut(s)	359, 763, 1208, 2275
CspAI	ACCGGT	1 cut(s)	1703
CviAII	CATG	5 cut(s)	305, 391, 932, 1414, 1720
CviQI	GTAC	4 cut(s)	359, 763, 1208, 2275
DdeI	CTNAG	2 cut(s)	696, 2235
DpnI	GATC	6 cut(s)	465, 503, 618, 644, 803, 1617
DpnII	GATC	6 cut(s)	463, 501, 616, 642, 801, 1615
DraIII	CACNNNGTG	2 cut(s)	934, 2086
EaeI	YGGCCR	3 cut(s)	1131, 1560, 1643
EagI	CGGCCG	1 cut(s)	1131
Eam1104I	CTCTTC	6 cut(s)	161, 560, 815, 817, 1224, 1251
EarI	CTCTTC	6 cut(s)	161, 560, 815, 817, 1224, 1251
EciI	GGCGGA	5 cut(s)	619, 1459, 1495, 1685, 1817
Ecl136II	GAGCTC	1 cut(s)	1357
EclXI	CGGCCG	1 cut(s)	1131
Eco130I	CCWWGG	3 cut(s)	112, 829, 1719
Eco147I	AGGCCT	1 cut(s)	1635
Eco24I	GRGCYC	2 cut(s)	549, 1359
Eco31I	GGTCTC	4 cut(s)	328, 819, 1471, 2344
Eco47I	GGWCC	3 cut(s)	455, 833, 1822
Eco52I	CGGCCG	1 cut(s)	1131
Eco53kI	GAGCTC	1 cut(s)	1357
Eco88I	CYCGRG	3 cut(s)	758, 836, 1343
EcoICRI	GAGCTC	1 cut(s)	1357
EcoO109I	RGGNCCY	2 cut(s)	455, 833
EcoRII	CCWGG	5 cut(s)	638, 942, 1038, 1062, 1575
EcoT14I	CCWWGG	3 cut(s)	112, 829, 1719
EcoT38I	GRGCYC	2 cut(s)	549, 1359
ErhI	CCWWGG	3 cut(s)	112, 829, 1719
Esp3I	CGTCTC	4 cut(s)	579, 691, 1245, 1507
FaeI	CATG	5 cut(s)	308, 394, 935, 1417, 1723
FaqI	GGGAC	4 cut(s)	819, 1183, 1275, 2311
FatI	CATG	5 cut(s)	304, 390, 931, 1413, 1719
FauI	CCCGC	3 cut(s)	532, 801, 2212
FblI	GTMKAC	1 cut(s)	1142
FokI	GGATG	6 cut(s)	653, 689, 1022, 1111, 1559, 2269
FriOI	GRGCYC	2 cut(s)	549, 1359
FspBI	CTAG	8 cut(s)	591, 1091, 1427, 1709, 1730, 1772, 1994, 2126
GlaI	GCGC	3 cut(s)	1294, 1383, 1388
GsaI	CCCAGC	3 cut(s)	23, 454, 1190
GsuI	CTGGAG	1 cut(s)	2194
HgaI	GACGC	2 cut(s)	1733, 1916
HhaI	GCGC	3 cut(s)	1295, 1384, 1389
Hin1I	GRCGYC	3 cut(s)	395, 882, 1893
Hin1II	CATG	5 cut(s)	308, 394, 935, 1417, 1723
Hin6I	GCGC	3 cut(s)	1293, 1382, 1387
HinP1I	GCGC	3 cut(s)	1293, 1382, 1387
HindIII	AAGCTT	1 cut(s)	2306
Hpy166II	GTNNAC	5 cut(s)	1072, 1143, 1606, 1867, 2277
Hpy188III	TCNNGA	8 cut(s)	391, 399, 620, 706, 854, 1345, 1619, 1730
Hpy8I	GTNNAC	5 cut(s)	1072, 1143, 1606, 1867, 2277
Hpy99I	CGWCG	6 cut(s)	650, 1862, 1895, 1910, 2087, 2146
HpyAV	CCTTC	4 cut(s)	1519, 1801, 2274, 2393
HpyCH4III	ACNGT	5 cut(s)	245, 610, 889, 1957, 2060
HpyCH4IV	ACGT	8 cut(s)	395, 572, 684, 711, 882, 1692, 1893, 2082
HpyF3I	CTNAG	2 cut(s)	696, 2235
HpySE526I	ACGT	8 cut(s)	395, 572, 684, 711, 882, 1692, 1893, 2082
Hsp92I	GRCGYC	3 cut(s)	395, 882, 1893
Hsp92II	CATG	5 cut(s)	308, 394, 935, 1417, 1723
HspAI	GCGC	3 cut(s)	1293, 1382, 1387
Kzo9I	GATC	6 cut(s)	463, 501, 616, 642, 801, 1615
LweI	GCATC	2 cut(s)	660, 1224
MaeI	CTAG	8 cut(s)	591, 1091, 1427, 1709, 1730, 1772, 1994, 2126
MaeII	ACGT	8 cut(s)	395, 572, 684, 711, 882, 1692, 1893, 2082
MaeIII	GTNAC	7 cut(s)	23, 883, 914, 1338, 1894, 1951, 1976
MalI	GATC	6 cut(s)	465, 503, 618, 644, 803, 1617
MbiI	CCGCTC	2 cut(s)	774, 1475
MboI	GATC	6 cut(s)	463, 501, 616, 642, 801, 1615
MflI	RGATCY	1 cut(s)	1615
MhlI	GDGCHC	3 cut(s)	549, 1359, 1608
MluCI	AATT	3 cut(s)	222, 250, 376
MlyI	GAGTC	7 cut(s)	577, 851, 1148, 1984, 2033, 2227, 2293
MmeI	TCCRAC	7 cut(s)	129, 351, 396, 605, 885, 1929, 2294
MroXI	GAANNNNTTC	1 cut(s)	175
MseI	TTAA	2 cut(s)	1751, 2304
MslI	CAYNNNNRTG	4 cut(s)	341, 389, 930, 2282
MspA1I	CMGCKG	3 cut(s)	45, 847, 912
MspCI	CTTAAG	1 cut(s)	2303
MteI	GCGCNGCGC	1 cut(s)	1385
Mva1269I	GAATGC	2 cut(s)	1583, 1879
MvaI	CCWGG	5 cut(s)	640, 944, 1040, 1064, 1577
MvnI	CGCG	3 cut(s)	268, 1382, 1389
NcoI	CCATGG	1 cut(s)	1719
NdeII	GATC	6 cut(s)	463, 501, 616, 642, 801, 1615
NlaIII	CATG	5 cut(s)	308, 394, 935, 1417, 1723
NlaIV	GGNNCC	8 cut(s)	456, 548, 835, 1375, 1714, 1824, 1903, 1941
NmeAIII	GCCGAG	2 cut(s)	1162, 2006
NmuCI	GTSAC	6 cut(s)	23, 883, 914, 1894, 1951, 1976
NspV	TTCGAA	1 cut(s)	1587
OliI	CACNNNNGTG	1 cut(s)	2282
PaeR7I	CTCGAG	2 cut(s)	758, 1343
PagI	TCATGA	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	1278
PceI	AGGCCT	1 cut(s)	1635
PcsI	WCGNNNNNNNCGW	3 cut(s)	392, 578, 1350
PctI	GAATGC	2 cut(s)	1583, 1879
PdmI	GAANNNNTTC	1 cut(s)	175
PfeI	GAWTC	5 cut(s)	487, 850, 1446, 1527, 2113
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	639
PfoI	TCCNGGA	1 cut(s)	1575
PinAI	ACCGGT	1 cut(s)	1703
PleI	GAGTC	7 cut(s)	577, 851, 1147, 1983, 2033, 2227, 2293
PpsI	GAGTC	7 cut(s)	577, 851, 1147, 1983, 2033, 2227, 2293
PpuMI	RGGWCCY	2 cut(s)	455, 833
PshAI	GACNNNNGTC	2 cut(s)	831, 1974
Psp124BI	GAGCTC	1 cut(s)	1359
Psp5II	RGGWCCY	2 cut(s)	455, 833
Psp6I	CCWGG	5 cut(s)	638, 942, 1038, 1062, 1575
PspFI	CCCAGC	3 cut(s)	19, 450, 1186
PspGI	CCWGG	5 cut(s)	638, 942, 1038, 1062, 1575
PspN4I	GGNNCC	8 cut(s)	456, 548, 835, 1375, 1714, 1824, 1903, 1941
PspPI	GGNCC	6 cut(s)	455, 833, 1674, 1682, 1822, 2138
PspPPI	RGGWCCY	2 cut(s)	455, 833
PspXI	VCTCGAGB	1 cut(s)	758
PstI	CTGCAG	2 cut(s)	846, 1878
PstNI	CAGNNNCTG	1 cut(s)	1437
PsuI	RGATCY	1 cut(s)	1615
PsyI	GACNNNGTC	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	4 cut(s)	360, 764, 1209, 2276
RsaNI	GTAC	4 cut(s)	359, 763, 1208, 2275
RseI	CAYNNNNRTG	4 cut(s)	341, 389, 930, 2282
SacI	GAGCTC	1 cut(s)	1359
SaqAI	TTAA	2 cut(s)	1751, 2304
Sau3AI	GATC	6 cut(s)	463, 501, 616, 642, 801, 1615
Sau96I	GGNCC	6 cut(s)	455, 833, 1674, 1682, 1822, 2138
SchI	GAGTC	7 cut(s)	577, 851, 1148, 1984, 2033, 2227, 2293
SduI	GDGCHC	3 cut(s)	549, 1359, 1608
SfaNI	GCATC	2 cut(s)	660, 1224
SfcI	CTRYAG	2 cut(s)	842, 1874
SfiI	GGCCNNNNNGGCC	1 cut(s)	1681
Sfr274I	CTCGAG	2 cut(s)	758, 1343
SfuI	TTCGAA	1 cut(s)	1587
SinI	GGWCC	3 cut(s)	455, 833, 1822
SlaI	CTCGAG	2 cut(s)	758, 1343
SmaI	CCCGGG	1 cut(s)	838
SmiMI	CAYNNNNRTG	4 cut(s)	341, 389, 930, 2282
SmlI	CTYRAG	4 cut(s)	758, 1343, 1972, 2303
SmoI	CTYRAG	4 cut(s)	758, 1343, 1972, 2303
SpeI	ACTAGT	1 cut(s)	1426
Sse9I	AATT	3 cut(s)	222, 250, 376
SseBI	AGGCCT	1 cut(s)	1635
SspMI	CTAG	8 cut(s)	591, 1091, 1427, 1709, 1730, 1772, 1994, 2126
SstI	GAGCTC	1 cut(s)	1359
StuI	AGGCCT	1 cut(s)	1635
StyI	CCWWGG	3 cut(s)	112, 829, 1719
TaaI	ACNGT	5 cut(s)	245, 610, 889, 1957, 2060
TaiI	ACGT	8 cut(s)	398, 575, 687, 714, 885, 1695, 1896, 2085
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	222, 250, 376
TauI	GCSGC	9 cut(s)	48, 537, 790, 1136, 1171, 1240, 1397, 1475, 1687
TfiI	GAWTC	5 cut(s)	487, 850, 1446, 1527, 2113
Tru1I	TTAA	2 cut(s)	1751, 2304
Tru9I	TTAA	2 cut(s)	1751, 2304
TscAI	CASTG	5 cut(s)	85, 892, 1162, 1874, 2286
TseFI	GTSAC	6 cut(s)	23, 883, 914, 1894, 1951, 1976
Tsp45I	GTSAC	6 cut(s)	23, 883, 914, 1894, 1951, 1976
TspDTI	ATGAA	2 cut(s)	953, 1977
TspGWI	ACGGA	2 cut(s)	1539, 1770
TspMI	CCCGGG	1 cut(s)	836
TspRI	CASTG	5 cut(s)	85, 892, 1162, 1874, 2286
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	639
Vha464I	CTTAAG	1 cut(s)	2303
VneI	GTGCAC	1 cut(s)	1604
VpaK11BI	GGWCC	3 cut(s)	455, 833, 1822
XbaI	TCTAGA	1 cut(s)	1729
XhoI	CTCGAG	2 cut(s)	758, 1343
XmaI	CCCGGG	1 cut(s)	836
XmiI	GTMKAC	1 cut(s)	1142
XmnI	GAANNNNTTC	1 cut(s)	175
XspI	CTAG	8 cut(s)	591, 1091, 1427, 1709, 1730, 1772, 1994, 2126
ZraI	GACGTC	3 cut(s)	396, 883, 1894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.