Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0018268

Physical Location & Seq

Genomic Coordinates Reverse (-)

41755204 .. 41764523

Gene Structure 9320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG349300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCTGAAGTTCACAGTGCAGCTTCAACACCATGCTCATCATCAACTTCCAACATTTCCGTTGATTTTTGTGCATGTAATTGAATCACTTGTGTTTGTCCCAATTATGATTGGCATATTGTTTTTTCTGTTCGAGTTTTACGATGACCAACTATTGGCCTTCATGGTCCTAATTCTTGTTTGGTTGAGTGAACTATTTACCCTGGTCAGATTCCAATTGGTGAAAACAGAAGAACACATGAGATATAAAGGCTTGCTACGGGAATCTAGAAGATGTGTGGATAATGCCGCACTTGGAAGCATTGAAAATAAGCATGCCACGGAAGCTTGGGGTATCATTGAAGACTTATCTAAGCAAAGTGCAAGGTGGGACTCTCATGACCGAAGAAGAAGACCAAGAGATGAGTTTGAGAAACCAAGGAGTCGTGAATTGTATGATGAGCATAAGAGTCGAGATTCCTATGATGAGCCTAGGAGAGGCCGTGACACCCTTGATGATTCAAGGAGGAGCCGTGAGTTGTATGATGAGCCACAGACTCATGAGCATGTGTTGATAATGTTAGAGGCCGAGAGCCTTTGCCTAGAGGTCGTGGGATTTATGAGGTGTCTATGCCAAGTGATGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Membralin

Protein Analysis

208

Amino Acids

24.9

Weight (kDa)

5.89

Isoelectric Point (pI)

70.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018268)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_3G00225920
rosa_samantha	Rh3CG349300 Rh4AG259300 Rh4BG265200 Rh4CG276600 Rh5AG344500 Rh5BG239100 Rh6AG058300 Rh6AG163500 Rh6DG283800 Rh7DG394200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	154, 619
AciI	CCGC	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	26
AfiI	CCNNNNNNNGG	3 cut(s)	154, 476, 619
AgsI	TTSAA	5 cut(s)	26, 83, 305, 341, 501
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	22, 326
AluI	AGCT	2 cut(s)	22, 326
AoxI	GGCC	3 cut(s)	156, 478, 564
ApeKI	GCWGC	1 cut(s)	19
AspA2I	CCTAGG	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	166
AvrII	CCTAGG	1 cut(s)	470
BbsI	GAAGAC	2 cut(s)	348, 397
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	613
BceAI	ACGGC	2 cut(s)	465, 495
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	1 cut(s)	203
BfaI	CTAG	3 cut(s)	267, 471, 581
BisI	GCNGC	2 cut(s)	20, 288
BlnI	CCTAGG	1 cut(s)	470
BlsI	GCNGC	2 cut(s)	21, 289
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	203
BpiI	GAAGAC	2 cut(s)	348, 397
BsaJI	CCNNGG	4 cut(s)	201, 318, 416, 470
BsaXI	ACNNNNNCTCC	4 cut(s)	466, 496, 496, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 476, 619
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	4 cut(s)	201, 318, 416, 470
BseLI	CCNNNNNNNGG	3 cut(s)	154, 476, 619
BseRI	GAGGAG	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	158, 480, 566
BslFI	GGGAC	2 cut(s)	83, 383
BslI	CCNNNNNNNGG	3 cut(s)	154, 476, 619
BsmFI	GGGAC	2 cut(s)	83, 383
BsnI	GGCC	3 cut(s)	158, 480, 566
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	3 cut(s)	158, 480, 566
BspHI	TCATGA	2 cut(s)	376, 538
BspLI	GGNNCC	1 cut(s)	509
BssECI	CCNNGG	4 cut(s)	201, 318, 416, 470
BssT1I	CCWWGG	2 cut(s)	416, 470
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	254, 315
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	318
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	3 cut(s)	77, 317, 548
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	348, 397
BsuRI	GGCC	3 cut(s)	158, 480, 566
BtgI	CCRYGG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	254, 315
CciI	TCATGA	2 cut(s)	376, 538
Cfr13I	GGNCC	1 cut(s)	166
CviAII	CATG	8 cut(s)	32, 74, 163, 238, 314, 377, 539, 545
DdeI	CTNAG	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	416, 470
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	26
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	416, 470
ErhI	CCWWGG	2 cut(s)	416, 470
FaeI	CATG	8 cut(s)	35, 77, 166, 241, 317, 380, 542, 548
FaqI	GGGAC	2 cut(s)	83, 383
FatI	CATG	8 cut(s)	31, 73, 162, 237, 313, 376, 538, 544
Fnu4HI	GCNGC	2 cut(s)	20, 288
Fsp4HI	GCNGC	2 cut(s)	20, 288
FspBI	CTAG	3 cut(s)	267, 471, 581
GluI	GCNGC	2 cut(s)	20, 288
HaeIII	GGCC	3 cut(s)	158, 480, 566
Hin1II	CATG	8 cut(s)	35, 77, 166, 241, 317, 380, 542, 548
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	9 cut(s)	83, 210, 263, 371, 421, 448, 455, 497, 535
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	12, 191
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	5 cut(s)	267, 377, 425, 452, 539
Hpy8I	GTNNAC	2 cut(s)	12, 191
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	3 cut(s)	19, 73, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	8 cut(s)	35, 77, 166, 241, 317, 380, 542, 548
LmnI	GCTCC	1 cut(s)	507
LpnPI	CCDG	2 cut(s)	188, 215
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	3 cut(s)	267, 471, 581
MaeIII	GTNAC	1 cut(s)	482
MboII	GAAGA	6 cut(s)	242, 282, 353, 396, 399, 402
MfeI	CAATTG	1 cut(s)	215
MluCI	AATT	5 cut(s)	78, 102, 171, 215, 428
MlyI	GAGTC	4 cut(s)	365, 430, 457, 529
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	5 cut(s)	470, 498, 556, 577, 594
MslI	CAYNNNNRTG	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	323
NlaIII	CATG	8 cut(s)	35, 77, 166, 241, 317, 380, 542, 548
NlaIV	GGNNCC	1 cut(s)	509
NmeAIII	GCCGAG	1 cut(s)	592
NmuCI	GTSAC	1 cut(s)	482
NspI	RCATGY	3 cut(s)	77, 317, 548
PaeI	GCATGC	1 cut(s)	317
PagI	TCATGA	2 cut(s)	376, 538
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	5 cut(s)	83, 210, 263, 455, 497
PflMI	CCANNNNNTGG	2 cut(s)	154, 619
PkrI	GCNGC	2 cut(s)	21, 289
PleI	GAGTC	4 cut(s)	365, 429, 456, 529
PpsI	GAGTC	4 cut(s)	365, 429, 456, 529
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	543
SatI	GCNGC	2 cut(s)	20, 288
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	4 cut(s)	365, 430, 457, 529
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	5 cut(s)	24, 328, 368, 588, 605
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	543
SphI	GCATGC	1 cut(s)	317
Sse9I	AATT	5 cut(s)	78, 102, 171, 215, 428
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	3 cut(s)	267, 471, 581
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	416, 470
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	132, 451
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	5 cut(s)	78, 102, 171, 215, 428
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	5 cut(s)	83, 210, 263, 455, 497
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	1 cut(s)	151
TspGWI	ACGGA	2 cut(s)	48, 335
TspRI	CASTG	1 cut(s)	21
Van91I	CCANNNNNTGG	2 cut(s)	154, 619
VpaK11BI	GGWCC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	474
XbaI	TCTAGA	1 cut(s)	266
XceI	RCATGY	3 cut(s)	77, 317, 548
XmaJI	CCTAGG	1 cut(s)	470
XspI	CTAG	3 cut(s)	267, 471, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.