Rh5AG344500

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018268
Physical Location & Seq
Forward (+)
56576797 .. 56621069
44273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG344500.1

Sequence Viewer

Length: 435 bp
ATGATTCAGATTCGATGGCCGGGTCATTTGTGTGAGGCTCGTCCGAGCGGCATGCGAAGGCACTTGATCGAAGGAGCAGTAGCAACATGTTCCCTTCCACTTCTATCGCTCATTCTGATGAATATTGTGAATGAAAGTAATCGACCTGCAACTAATGAAGCTTCAGGAGCCTGGACCTCTTTGTTTAATGTAAATTGCACAAGCAGTGGTAGCAGCTCTGGAAGTATCAATAGTTCTGCGAAAAAGGAGGATGTGGATATTGATTGCTTGGACTATGAAGTCTTATGGGAAGACATGATAATTGGAGAGAGGATTGGGCAAGCAATTCAAGCATCAAGTGTGCTTCCTTCTTTCCCTTCAAGCGTATTAGCTCCGTTTTCTTTCTCTCTAAAGCCAACCACACGATACATAGTCATCCTTCCTTGTCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

144

Amino Acids

15.6

Weight (kDa)

5.27

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
Acc36I ACCTGC 1 cut(s) 154
AccBSI CCGCTC 1 cut(s) 48
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 147
AflIII ACRYGT 1 cut(s) 86
AgsI TTSAA 2 cut(s) 329, 360
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 3 cut(s) 161, 216, 371
AluI AGCT 3 cut(s) 161, 216, 371
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 21
AvaII GGWCC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 225
BccI CCATC 1 cut(s) 9
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 1 cut(s) 172
BcnI CCSGG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 2 cut(s) 49, 214
BlsI GCNGC 2 cut(s) 50, 215
Bme1390I CCNGG 2 cut(s) 21, 172
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 21, 172
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 172
BseGI GGATG 2 cut(s) 256, 414
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 20
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 48
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 53, 321
BstF5I GGATG 2 cut(s) 256, 414
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 167, 210, 329
BstNI CCWGG 1 cut(s) 172
BstNSI RCATGY 2 cut(s) 55, 90
BstSCI CCNGG 2 cut(s) 19, 170
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 2 cut(s) 256, 414
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 53, 321
Cfr13I GGNCC 1 cut(s) 174
CviAII CATG 4 cut(s) 52, 87, 295, 432
CviJI RGCY 7 cut(s) 19, 38, 161, 170, 216, 371, 394
CviKI_1 RGCY 7 cut(s) 19, 38, 161, 170, 216, 371, 394
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 170
FaeI CATG 4 cut(s) 55, 90, 298, 435
FaiI YATR 7 cut(s) 53, 88, 276, 286, 296, 410, 433
FatI CATG 4 cut(s) 51, 86, 294, 431
Fnu4HI GCNGC 2 cut(s) 49, 214
FokI GGATG 2 cut(s) 263, 401
Fsp4HI GCNGC 2 cut(s) 49, 214
GluI GCNGC 2 cut(s) 49, 214
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 20
Hin1II CATG 4 cut(s) 55, 90, 298, 435
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 4, 10
HpaII CCGG 1 cut(s) 20
Hpy188I TCNGA 3 cut(s) 9, 45, 117
Hpy188III TCNNGA 2 cut(s) 165, 219
HpyAV CCTTC 6 cut(s) 51, 65, 104, 357, 366, 428
HpyCH4V TGCA 2 cut(s) 149, 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 210, 329
Hsp92II CATG 4 cut(s) 55, 90, 298, 435
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 3 cut(s) 74, 167, 376
LpnPI CCDG 6 cut(s) 33, 150, 157, 159, 184, 204
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 341
MalI GATC 1 cut(s) 68
MbiI CCGCTC 1 cut(s) 48
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 302
MluCI AATT 3 cut(s) 193, 300, 324
MnlI CCTC 4 cut(s) 28, 187, 241, 303
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 2 cut(s) 30, 116
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 21, 172
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 3 cut(s) 167, 210, 329
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 66
NlaIII CATG 4 cut(s) 55, 90, 298, 435
NlaIV GGNNCC 1 cut(s) 169
NspI RCATGY 2 cut(s) 55, 90
PaeI GCATGC 1 cut(s) 55
PciI ACATGT 1 cut(s) 86
PfeI GAWTC 2 cut(s) 4, 10
PkrI GCNGC 2 cut(s) 50, 215
PscI ACATGT 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 174
PsrI GAACNNNNNNTAC 2 cut(s) 217, 249
RseI CAYNNNNRTG 2 cut(s) 30, 116
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 49, 214
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 174
ScrFI CCNGG 2 cut(s) 21, 172
SetI ASST 5 cut(s) 148, 163, 179, 218, 373
SfaNI GCATC 1 cut(s) 341
SinI GGWCC 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 30, 116
SphI GCATGC 1 cut(s) 55
Sse9I AATT 3 cut(s) 193, 300, 324
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 124
StyD4I CCNGG 2 cut(s) 19, 170
TaqI TCGA 3 cut(s) 13, 69, 142
TasI AATT 3 cut(s) 193, 300, 324
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 2 cut(s) 4, 10
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 213
TspDTI ATGAA 4 cut(s) 134, 147, 171, 291
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 174
XceI RCATGY 2 cut(s) 55, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.