Rh6DG283800

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018268
Physical Location & Seq
Reverse (-)
47799114 .. 47811489
12376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG283800.1

Sequence Viewer

Length: 501 bp
ATGGCCGGGCATATTACTTCCAATAGCATTGGTGGTGAAATTCCATATGTCTTACCCCCCAATGCGACTCACATAGGACTCAGCTCAGGAGGGCCAAGCCTGGAGCATGTGGAGGAAGATAAACAGCTCATGAATGGCGAAGTCCAATATATTAGAGAAGAAGGATGTTATTGGAGCTTCCTGTGGCTCCGAGAGGCACAAGGGGAAATGATTAGTGGTAGCAGCTCTGGAAGTATCAATAGTTCTGCGAAAAAGGAGGATGTGGATATTGATTGCTTGGACTATGAAGTCTTATGGGAAGACATGATAATTGGAGAGAGGATTGGGCAAGGTTCATGTGGAACTGTATACCATGGTCTGTGGGATGGATCAACAAAAAGTGAAGTTCAAATTTCAATAAGTGACACCCTAACACTCATCACCAAGTCTGGGAAGGGAATGTCGAATAGCTCCGGCGGCGGGCTTTTCCAACCGTACATCTCCATCTCGAGCAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

166

Amino Acids

17.87

Weight (kDa)

4.53

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 348
AciI CCGC 2 cut(s) 456, 459
AclWI GGATC 1 cut(s) 376
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 39, 390
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 2 cut(s) 429, 459
AgsI TTSAA 2 cut(s) 389, 396
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 5 cut(s) 84, 127, 177, 225, 450
AluI AGCT 5 cut(s) 84, 127, 177, 225, 450
AlwI GGATC 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 487
AoxI GGCC 2 cut(s) 3, 92
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 2 cut(s) 39, 390
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 47, 412
AvaI CYCGRG 1 cut(s) 487
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 234
BccI CCATC 2 cut(s) 359, 491
BciT130I CCWGG 1 cut(s) 101
BcnI CCSGG 1 cut(s) 7
BfaI CTAG 1 cut(s) 499
BisI GCNGC 2 cut(s) 223, 457
BlsI GCNGC 2 cut(s) 224, 458
Bme1390I CCNGG 2 cut(s) 7, 101
BmeT110I CYCGRG 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 2 cut(s) 7, 101
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 459
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 3 cut(s) 170, 265, 370
BseLI CCNNNNNNNGG 2 cut(s) 429, 459
BseMII CTCAG 2 cut(s) 94, 99
BseXI GCAGC 1 cut(s) 234
BshFI GGCC 2 cut(s) 5, 94
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 2 cut(s) 6, 453
BslI CCNNNNNNNGG 2 cut(s) 429, 459
BsnI GGCC 2 cut(s) 5, 94
BsoBI CYCGRG 1 cut(s) 487
Bsp143I GATC 1 cut(s) 368
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 2 cut(s) 456, 459
BspANI GGCC 2 cut(s) 5, 94
BspCNI CTCAG 2 cut(s) 93, 98
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 188
BspPI GGATC 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 1 cut(s) 368
BssNAI GTATAC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 352
Bst1107I GTATAC 1 cut(s) 349
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 2 cut(s) 346, 474
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 2 cut(s) 80, 85
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 3 cut(s) 170, 265, 370
BstKTI GATC 1 cut(s) 371
BstMBI GATC 1 cut(s) 368
BstMWI GCNNNNNNNGC 1 cut(s) 456
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 2 cut(s) 5, 99
BstV1I GCAGC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 306
BstZ17I GTATAC 1 cut(s) 349
BsuRI GGCC 2 cut(s) 5, 94
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 3 cut(s) 170, 265, 370
Cac8I GCNNGC 1 cut(s) 461
CciI TCATGA 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 475
CviAII CATG 5 cut(s) 107, 130, 304, 336, 353
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 2 cut(s) 80, 85
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 5 cut(s) 110, 133, 307, 339, 356
FatI CATG 5 cut(s) 106, 129, 303, 335, 352
FauI CCCGC 1 cut(s) 452
FauNDI CATATG 1 cut(s) 46
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 223, 457
FokI GGATG 3 cut(s) 177, 272, 377
Fsp4HI GCNGC 2 cut(s) 223, 457
FspBI CTAG 1 cut(s) 499
GluI GCNGC 2 cut(s) 223, 457
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 2 cut(s) 5, 94
HapII CCGG 2 cut(s) 6, 453
Hin1II CATG 5 cut(s) 110, 133, 307, 339, 356
HinfI GANTC 2 cut(s) 67, 78
HpaII CCGG 2 cut(s) 6, 453
HphI GGTGA 2 cut(s) 47, 412
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 4 cut(s) 87, 130, 228, 487
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 2 cut(s) 155, 427
HpyCH4III ACNGT 2 cut(s) 346, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 456
HpyF3I CTNAG 2 cut(s) 80, 85
Hsp92II CATG 5 cut(s) 110, 133, 307, 339, 356
Kzo9I GATC 1 cut(s) 368
LmnI GCTCC 4 cut(s) 103, 174, 192, 455
LpnPI CCDG 8 cut(s) 19, 72, 86, 113, 194, 213, 414, 466
Lsp1109I GCAGC 1 cut(s) 234
MaeI CTAG 1 cut(s) 499
MaeIII GTNAC 1 cut(s) 401
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 3 cut(s) 128, 170, 311
MluCI AATT 3 cut(s) 39, 309, 390
MlyI GAGTC 2 cut(s) 61, 72
MmeI TCCRAC 1 cut(s) 493
MnlI CCTC 5 cut(s) 83, 106, 187, 250, 312
MspI CCGG 2 cut(s) 6, 453
MspR9I CCNGG 2 cut(s) 7, 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 456
NciI CCSGG 1 cut(s) 7
NcoI CCATGG 1 cut(s) 352
NdeI CATATG 1 cut(s) 46
NdeII GATC 1 cut(s) 368
NlaIII CATG 5 cut(s) 110, 133, 307, 339, 356
NlaIV GGNNCC 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 1 cut(s) 110
PaeR7I CTCGAG 1 cut(s) 487
PagI TCATGA 1 cut(s) 129
PkrI GCNGC 2 cut(s) 224, 458
PleI GAGTC 2 cut(s) 61, 72
PpsI GAGTC 2 cut(s) 61, 72
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 92
PsrI GAACNNNNNNTAC 2 cut(s) 226, 258
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SatI GCNGC 2 cut(s) 223, 457
Sau3AI GATC 1 cut(s) 368
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 2 cut(s) 61, 72
ScrFI CCNGG 2 cut(s) 7, 101
SetI ASST 6 cut(s) 86, 129, 179, 227, 334, 452
Sfr274I CTCGAG 1 cut(s) 487
SlaI CTCGAG 1 cut(s) 487
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
Sse9I AATT 3 cut(s) 39, 309, 390
SsiI CCGC 2 cut(s) 456, 459
SspMI CTAG 1 cut(s) 499
StyD4I CCNGG 2 cut(s) 5, 99
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 346, 474
TaqI TCGA 2 cut(s) 443, 488
TasI AATT 3 cut(s) 39, 309, 390
TauI GCSGC 1 cut(s) 459
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 3 cut(s) 146, 300, 324
XapI RAATTY 2 cut(s) 39, 390
XceI RCATGY 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.