Rh6AG058300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018268
Physical Location & Seq
Forward (+)
8667440 .. 8667784
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG058300.1

Sequence Viewer

Length: 345 bp
ATGCCGCACTTGGAAGCATTGAAAATAAGCATGCCACGGAAGCTTGGGGTATCATTGAAGACTTATCTAAGCAAAGTGCAAGGTGGGACTCTCATGACCGAAGAAGAAGACCAAGAGATGAGTTTGAGAAACCAAGGAGTCGTGAATTGTATGATGAGCATAAGAGTCGAGATTCCTATGATGAGCCTAGAAGAGGTCGTGAGACCCTTGATGATTCAAGGAGGAGCCATGAGTTGTATGATGAGCCACGGACTCGTGAGCATGGTGTTGATAATGTTAGAGGCCGGGAGCCTTTGCCTAGAGGTCGTGGGATTTATGAGGTGTCTATGCCAAGTGATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

5.37

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 337
AciI CCGC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 193, 337
AgsI TTSAA 3 cut(s) 22, 58, 218
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 196
AoxI GGCC 1 cut(s) 282
AsuC2I CCSGG 1 cut(s) 286
BauI CACGAG 1 cut(s) 254
BbsI GAAGAC 2 cut(s) 65, 114
BccI CCATC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 188, 299
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 226, 290
BmrFI CCNGG 1 cut(s) 286
BpiI GAAGAC 2 cut(s) 65, 114
BpuMI CCSGG 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 35, 133, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 337
BseDI CCNNGG 3 cut(s) 35, 133, 247
BseLI CCNNNNNNNGG 2 cut(s) 193, 337
BseRI GAGGAG 1 cut(s) 237
BshFI GGCC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 193, 337
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 284
Bso31I GGTCTC 1 cut(s) 196
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 284
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 226, 290
BspTNI GGTCTC 1 cut(s) 196
BssECI CCNNGG 3 cut(s) 35, 133, 247
BssSI CACGAG 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 68
BstDSI CCRYGG 2 cut(s) 35, 247
BstENI CCTNNNNNAGG 1 cut(s) 191
BstMAI GTCTC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 284
BstV2I GAAGAC 2 cut(s) 65, 114
BsuRI GGCC 1 cut(s) 284
BtgI CCRYGG 2 cut(s) 35, 247
Cac8I GCNNGC 1 cut(s) 32
CciI TCATGA 1 cut(s) 93
CviAII CATG 4 cut(s) 31, 94, 229, 262
CviJI RGCY 6 cut(s) 43, 186, 227, 246, 284, 291
CviKI_1 RGCY 6 cut(s) 43, 186, 227, 246, 284, 291
DdeI CTNAG 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 196
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 4 cut(s) 34, 97, 232, 265
FaqI GGGAC 1 cut(s) 100
FatI CATG 4 cut(s) 30, 93, 228, 261
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 188, 299
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 284
HapII CCGG 1 cut(s) 285
Hin1II CATG 4 cut(s) 34, 97, 232, 265
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 6 cut(s) 88, 138, 165, 172, 214, 252
HpaII CCGG 1 cut(s) 285
Hpy188III TCNNGA 5 cut(s) 94, 142, 169, 199, 256
HpyCH4V TGCA 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 4 cut(s) 34, 97, 232, 265
LmnI GCTCC 2 cut(s) 224, 288
LpnPI CCDG 1 cut(s) 298
MaeI CTAG 2 cut(s) 188, 299
MboII GAAGA 5 cut(s) 70, 113, 116, 119, 203
MluCI AATT 1 cut(s) 145
MlyI GAGTC 4 cut(s) 82, 147, 174, 246
MnlI CCTC 5 cut(s) 187, 215, 274, 295, 312
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 286
NlaIII CATG 4 cut(s) 34, 97, 232, 265
NlaIV GGNNCC 2 cut(s) 226, 290
NspI RCATGY 1 cut(s) 34
PaeI GCATGC 1 cut(s) 34
PagI TCATGA 1 cut(s) 93
PfeI GAWTC 2 cut(s) 172, 214
PflMI CCANNNNNTGG 1 cut(s) 337
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 4 cut(s) 82, 146, 173, 246
PpsI GAGTC 4 cut(s) 82, 146, 173, 246
PspN4I GGNNCC 2 cut(s) 226, 290
SatI GCNGC 1 cut(s) 5
SchI GAGTC 4 cut(s) 82, 147, 174, 246
ScrFI CCNGG 1 cut(s) 286
SetI ASST 5 cut(s) 45, 85, 198, 306, 323
SphI GCATGC 1 cut(s) 34
Sse9I AATT 1 cut(s) 145
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 188, 299
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 133
TaqI TCGA 1 cut(s) 168
TaqII GACCGA 1 cut(s) 113
TasI AATT 1 cut(s) 145
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 172, 214
TspGWI ACGGA 2 cut(s) 52, 264
Van91I CCANNNNNTGG 1 cut(s) 337
XagI CCTNNNNNAGG 1 cut(s) 191
XceI RCATGY 1 cut(s) 34
XspI CTAG 2 cut(s) 188, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.