Rh5BG239100

kinase) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0018268
Physical Location & Seq
Reverse (-)
28607716 .. 28612251
4536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG239100.1

Sequence Viewer

Length: 486 bp
ATGACCGAAGAAGAAGACCAAGAGATGAGTTTGAGAAACCAAGGAGTCGTGAATTGTATGATGAGCATAAGAGTCGAGATTCCTATGATGAGCCTAGGAGAGCCCGTGACACCCTTCATGATTCAAGGAGGAGCCAGGAAGCAGCCACTCTCAGATACTTCCACCTGTTCTATAGCAGTTGACAGAGGACTCAGCTCAGGAGGGCCAAGCCTGGAGCATGTGGAGGAAGATAAACAGCTCATGAATGGCGAAGTCCAATATATTAGAGAAGAAGGATGTTATTGGAGCTTCCTGTGGCTCCGAGAGGCACAAGGGGAAATGATAAGAAAATTAGTCTTATGGGAAGACATGATAATTGGAGAGAGGATTGGGCAAGGTTCATGTGGAACTGTATACCATGGTCTGTGGGATGGATCAGTTCAAAGTTTGTTAGTACTGATGGCAGTACAGGCAGCAAGGTCTCATCATTTTCAACAAGTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

161

Amino Acids

18.08

Weight (kDa)

4.77

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 393
AclWI GGATC 1 cut(s) 421
AfaI GTAC 2 cut(s) 435, 447
AgsI TTSAA 3 cut(s) 125, 422, 473
AjnI CCWGG 2 cut(s) 134, 210
AluBI AGCT 3 cut(s) 195, 238, 288
AluI AGCT 3 cut(s) 195, 238, 288
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 1 cut(s) 421
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 142, 452
AspA2I CCTAGG 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 203
AvrII CCTAGG 1 cut(s) 94
BanII GRGCYC 1 cut(s) 105
BbsI GAAGAC 2 cut(s) 21, 351
BbvI GCAGC 2 cut(s) 154, 464
BccI CCATC 2 cut(s) 404, 433
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 2 cut(s) 136, 212
BcoDI GTCTC 1 cut(s) 465
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 2 cut(s) 143, 453
BlnI CCTAGG 1 cut(s) 94
BlsI GCNGC 2 cut(s) 144, 454
BmcAI AGTACT 1 cut(s) 435
Bme1390I CCNGG 2 cut(s) 136, 212
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 133, 299
BmrFI CCNGG 2 cut(s) 136, 212
BpiI GAAGAC 2 cut(s) 21, 351
BpmI CTGGAG 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 465
BsaJI CCNNGG 3 cut(s) 40, 94, 397
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
BseBI CCWGG 2 cut(s) 136, 212
BseDI CCNNGG 3 cut(s) 40, 94, 397
BseGI GGATG 2 cut(s) 281, 415
BseMII CTCAG 3 cut(s) 165, 205, 210
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 154, 464
BshFI GGCC 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 465
BsnI GGCC 1 cut(s) 205
Bso31I GGTCTC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 413
Bsp19I CCATGG 1 cut(s) 397
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 3 cut(s) 164, 204, 209
BspHI TCATGA 2 cut(s) 117, 240
BspLI GGNNCC 2 cut(s) 133, 299
BspPI GGATC 1 cut(s) 421
BspTNI GGTCTC 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 40, 94, 397
BssMI GATC 1 cut(s) 413
BssNAI GTATAC 1 cut(s) 394
BssT1I CCWWGG 3 cut(s) 40, 94, 397
Bst1107I GTATAC 1 cut(s) 394
Bst2UI CCWGG 2 cut(s) 136, 212
Bst4CI ACNGT 1 cut(s) 391
BstDEI CTNAG 3 cut(s) 151, 191, 196
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 2 cut(s) 281, 415
BstKTI GATC 1 cut(s) 416
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 1 cut(s) 413
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 2 cut(s) 136, 212
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 134, 210
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 154, 464
BstV2I GAAGAC 2 cut(s) 21, 351
BstZ17I GTATAC 1 cut(s) 394
BsuRI GGCC 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 2 cut(s) 281, 415
CciI TCATGA 2 cut(s) 117, 240
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 434, 446
CviAII CATG 6 cut(s) 118, 218, 241, 349, 381, 398
CviQI GTAC 2 cut(s) 434, 446
DdeI CTNAG 3 cut(s) 151, 191, 196
DpnI GATC 1 cut(s) 415
DpnII GATC 1 cut(s) 413
Eco130I CCWWGG 3 cut(s) 40, 94, 397
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 134, 210
EcoT14I CCWWGG 3 cut(s) 40, 94, 397
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 3 cut(s) 40, 94, 397
FaeI CATG 6 cut(s) 121, 221, 244, 352, 384, 401
FatI CATG 6 cut(s) 117, 217, 240, 348, 380, 397
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 143, 453
FokI GGATG 2 cut(s) 288, 422
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 143, 453
FspBI CTAG 1 cut(s) 95
GluI GCNGC 2 cut(s) 143, 453
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 1 cut(s) 205
Hin1II CATG 6 cut(s) 121, 221, 244, 352, 384, 401
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 5 cut(s) 45, 72, 79, 121, 189
Hpy166II GTNNAC 2 cut(s) 181, 394
Hpy188I TCNGA 2 cut(s) 154, 302
Hpy188III TCNNGA 5 cut(s) 49, 76, 118, 198, 241
Hpy8I GTNNAC 2 cut(s) 181, 394
HpyAV CCTTC 2 cut(s) 124, 266
HpyCH4III ACNGT 1 cut(s) 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 3 cut(s) 151, 191, 196
Hsp92II CATG 6 cut(s) 121, 221, 244, 352, 384, 401
Kzo9I GATC 1 cut(s) 413
LmnI GCTCC 4 cut(s) 131, 214, 285, 303
LpnPI CCDG 8 cut(s) 121, 148, 178, 183, 197, 224, 305, 434
Lsp1109I GCAGC 2 cut(s) 154, 464
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 415
MboI GATC 1 cut(s) 413
MboII GAAGA 6 cut(s) 20, 23, 26, 239, 281, 356
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 3 cut(s) 52, 329, 354
MlyI GAGTC 3 cut(s) 54, 81, 183
MnlI CCTC 6 cut(s) 122, 179, 194, 217, 298, 357
MspR9I CCNGG 2 cut(s) 136, 212
MvaI CCWGG 2 cut(s) 136, 212
MwoI GCNNNNNNNGC 1 cut(s) 449
NcoI CCATGG 1 cut(s) 397
NdeII GATC 1 cut(s) 413
NlaIII CATG 6 cut(s) 121, 221, 244, 352, 384, 401
NlaIV GGNNCC 2 cut(s) 133, 299
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 1 cut(s) 221
PagI TCATGA 2 cut(s) 117, 240
PfeI GAWTC 2 cut(s) 79, 121
PkrI GCNGC 2 cut(s) 144, 454
PleI GAGTC 3 cut(s) 53, 80, 183
PpsI GAGTC 3 cut(s) 53, 80, 183
Psp6I CCWGG 2 cut(s) 134, 210
PspGI CCWGG 2 cut(s) 134, 210
PspN4I GGNNCC 2 cut(s) 133, 299
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 2 cut(s) 435, 447
RsaNI GTAC 2 cut(s) 434, 446
SatI GCNGC 2 cut(s) 143, 453
Sau3AI GATC 1 cut(s) 413
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 1 cut(s) 435
SchI GAGTC 3 cut(s) 54, 81, 183
ScrFI CCNGG 2 cut(s) 136, 212
SduI GDGCHC 1 cut(s) 105
SetI ASST 6 cut(s) 167, 197, 240, 290, 379, 461
SfcI CTRYAG 1 cut(s) 171
Sse9I AATT 3 cut(s) 52, 329, 354
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 134, 210
StyI CCWWGG 3 cut(s) 40, 94, 397
TaaI ACNGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 75
TaqII GACCGA 1 cut(s) 20
TasI AATT 3 cut(s) 52, 329, 354
TatI WGTACW 2 cut(s) 433, 445
TfiI GAWTC 2 cut(s) 79, 121
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 142, 452
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 106, 257, 369
XceI RCATGY 1 cut(s) 221
XmaJI CCTAGG 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.