Rh6AG163500

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018268
Physical Location & Seq
Forward (+)
25834815 .. 25837651
2837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG163500.1

Sequence Viewer

Length: 417 bp
ATGCCTCAGGGACTTAAAAATTTCAATAAAGCTGTCAGGGTACTTATCATTTGCCTTAAGAAGATTGATAATGACAACTATCTTGAGGTGAATGAAAGTAATCGACCTGCAACTAATGAAGCTTCAGGAGCTTGGACCTCTTTGTTTAATGTAAATTGCACAAGCAGTGGTAGCAGCTCTGGAAGTATCAATAGTTCTGCGAAAAAGGAGGATGTGGATATTGATTGCTTGGACTATGAAGTCTTATGGGAAGACATGATAATTGGAGAGAGGATTGGGCAAGTTAATGATCTTCCAACTGCCCACTGCCTGCTACAAAACAAAGTTCATGTGGAACTGTATACCATGGTTCAAAGTTTGTTAGTACTGATGGCAATACAGGCAGCAAGGTCTCATCATTTTCAACAAGTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

138

Amino Acids

15.37

Weight (kDa)

5.24

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 2 cut(s) 42, 366
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 3 cut(s) 25, 353, 404
AluBI AGCT 4 cut(s) 32, 122, 131, 177
AluI AGCT 4 cut(s) 32, 122, 131, 177
Alw26I GTCTC 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 174, 383
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 135
AxyI CCTNAGG 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 186, 395
BccI CCATC 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 396
BfrI CTTAAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 2 cut(s) 175, 384
BlsI GCNGC 2 cut(s) 176, 385
BmcAI AGTACT 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 345
Bse21I CCTNAGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 186, 395
BslFI GGGAC 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 24
Bso31I GGTCTC 1 cut(s) 396
Bsp143I GATC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 345
BspCNI CTCAG 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 115
BspTI CTTAAG 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 396
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 1 cut(s) 289
BssNAI GTATAC 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 345
Bst1107I GTATAC 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 3 cut(s) 128, 171, 380
BstV1I GCAGC 2 cut(s) 186, 395
BstV2I GAAGAC 1 cut(s) 258
BstZ17I GTATAC 1 cut(s) 342
Bsu36I CCTNAGG 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 2 cut(s) 172, 304
BtsIMutI CAGTG 2 cut(s) 172, 304
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 135
Csp6I GTAC 2 cut(s) 41, 365
CviAII CATG 3 cut(s) 256, 329, 346
CviJI RGCY 4 cut(s) 32, 122, 131, 177
CviKI_1 RGCY 4 cut(s) 32, 122, 131, 177
CviQI GTAC 2 cut(s) 41, 365
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 108
Eco81I CCTNAGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 3 cut(s) 259, 332, 349
FaiI YATR 6 cut(s) 237, 247, 257, 330, 342, 347
FaqI GGGAC 1 cut(s) 24
FatI CATG 3 cut(s) 255, 328, 345
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 2 cut(s) 175, 384
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 175, 384
GluI GCNGC 2 cut(s) 175, 384
Hin1II CATG 3 cut(s) 259, 332, 349
HindIII AAGCTT 1 cut(s) 120
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 342
Hpy188III TCNNGA 3 cut(s) 83, 126, 180
Hpy8I GTNNAC 1 cut(s) 342
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 110, 159
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 171, 380
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 3 cut(s) 259, 332, 349
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 6 cut(s) 22, 111, 120, 165, 323, 365
Lsp1109I GCAGC 2 cut(s) 186, 395
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 3 cut(s) 73, 263, 284
MluCI AATT 3 cut(s) 19, 154, 261
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 5 cut(s) 15, 79, 148, 202, 264
MseI TTAA 4 cut(s) 15, 57, 147, 285
MspCI CTTAAG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 128, 171, 380
NcoI CCATGG 1 cut(s) 345
NdeII GATC 1 cut(s) 289
NlaIII CATG 3 cut(s) 259, 332, 349
PkrI GCNGC 2 cut(s) 176, 385
PspPI GGNCC 1 cut(s) 135
PsrI GAACNNNNNNTAC 2 cut(s) 178, 210
RsaI GTAC 2 cut(s) 42, 366
RsaNI GTAC 2 cut(s) 41, 365
SaqAI TTAA 4 cut(s) 15, 57, 147, 285
SatI GCNGC 2 cut(s) 175, 384
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 135
ScaI AGTACT 1 cut(s) 366
SetI ASST 8 cut(s) 34, 90, 109, 124, 133, 140, 179, 392
SinI GGWCC 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 56, 83
SmoI CTYRAG 2 cut(s) 56, 83
Sse9I AATT 3 cut(s) 19, 154, 261
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 103
TasI AATT 3 cut(s) 19, 154, 261
TatI WGTACW 1 cut(s) 364
Tru1I TTAA 4 cut(s) 15, 57, 147, 285
Tru9I TTAA 4 cut(s) 15, 57, 147, 285
TscAI CASTG 2 cut(s) 172, 311
TseI GCWGC 2 cut(s) 174, 383
TspDTI ATGAA 4 cut(s) 108, 132, 252, 317
TspRI CASTG 2 cut(s) 172, 311
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.