Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016592

Physical Location & Seq

Genomic Coordinates Forward (+)

1235108 .. 1235723

Gene Structure 616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG017200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCAACACCTCATATAGCTGGAATAGCAGCACTTATTAAGCAGCACAATCCTTCATGGACTCCTTCCATGATTGCATCTGCGATTTCCACCACGGCAACCAAATATGATAAAAATGGAGAACTGATAATGGCTGAAGGATCTGATATAGGCAGTAAATATCCCTCCACTCCTTTTGATTTTGGAGCTGGCTTTGTCTGTCCAAGTCATGCCATGGATCCGGGTCTAGTCTTATCTTCAGGATATGAAGACTACATCAGCTTCTTGTGCTCATTGCGTGATACCAATCCAAGTACAATAAGAACTGTCACTGGAGAGTTGTGCAACAAGCCACTTAACCATCCAGCCAATCTGAACCTTCCTTCAGTAACAATATCAACATTGAATGGGTCTCAAATAGTACGAAGGGTTTTCATGAACGTCGAGAGCAAGCCAGAGACTTACTCTAGCTCGGTGCTGCCACCAAATGGGACAACAGTAGACATATCTCCTCCTTCGTTTACCAAAGCTTCACAAGGTACTCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0032501 GO:0032502 GO:0042335 GO:0043170 GO:0044238 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

176

Amino Acids

18.68

Weight (kDa)

6.03

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	1 - 40	5e-09	Subtilase family
fn3_6	PF17766	117 - 173	5.6e-10	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32980
malus_domestica	MD14G1139200.v1.1
pyrus_communis	pycom14g11490
rosa_chinensis	RchiOBHm_Chr5g0002201
rosa_multiflora	Rmu_sc0001492.1_g000003
rosa_roxburghii	Rroxscaffold_3G00267180
rosa_rugosa	Rorug06G0483500
rosa_samantha	Rh5AG017200 Rh7AG088600 Rh7BG090000 Rh7BG090400 Rh7CG089200 Rh7CG089400 Rh7DG090800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	467
AccI	GTMKAC	1 cut(s)	480
AclWI	GGATC	3 cut(s)	148, 212, 225
AcuI	CTGAAG	3 cut(s)	156, 222, 348
AfaI	GTAC	3 cut(s)	295, 402, 520
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	385
AluBI	AGCT	6 cut(s)	20, 188, 261, 450, 509, 528
AluI	AGCT	6 cut(s)	20, 188, 261, 450, 509, 528
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	396, 431
AlwI	GGATC	3 cut(s)	148, 212, 225
ApeKI	GCWGC	3 cut(s)	29, 43, 457
AsuC2I	CCSGG	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	3 cut(s)	41, 55, 444
BccI	CCATC	1 cut(s)	348
BceAI	ACGGC	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	396, 431
BfaI	CTAG	3 cut(s)	227, 447, 529
BisI	GCNGC	3 cut(s)	30, 44, 458
BlsI	GCNGC	3 cut(s)	31, 45, 459
Bme1390I	CCNGG	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	255
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpmI	CTGGAG	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	93, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	93, 213
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	3 cut(s)	41, 55, 444
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	2 cut(s)	396, 431
BsmFI	GGGAC	1 cut(s)	484
Bso31I	GGTCTC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	140, 217
Bsp19I	CCATGG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	3 cut(s)	148, 212, 225
BspTNI	GGTCTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	93, 213
BssMI	GATC	2 cut(s)	140, 217
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	307, 478
BstC8I	GCNNGC	2 cut(s)	190, 431
BstDSI	CCRYGG	2 cut(s)	93, 213
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	2 cut(s)	143, 220
BstMAI	GTCTC	2 cut(s)	396, 431
BstMBI	GATC	2 cut(s)	140, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 267
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	41, 55, 444
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	2 cut(s)	140, 217
BstYI	RGATCY	2 cut(s)	140, 217
BtgI	CCRYGG	2 cut(s)	93, 213
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	190, 431
CciI	TCATGA	1 cut(s)	414
Csp6I	GTAC	3 cut(s)	294, 401, 519
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	5 cut(s)	57, 70, 209, 214, 415
CviQI	GTAC	3 cut(s)	294, 401, 519
DpnI	GATC	2 cut(s)	142, 219
DpnII	GATC	2 cut(s)	140, 217
Eco130I	CCWWGG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	396
Eco57I	CTGAAG	3 cut(s)	156, 222, 348
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	5 cut(s)	60, 73, 212, 217, 418
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	5 cut(s)	56, 69, 208, 213, 414
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	3 cut(s)	30, 44, 458
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	30, 44, 458
FspBI	CTAG	3 cut(s)	227, 447, 529
GluI	GCNGC	3 cut(s)	30, 44, 458
GsuI	CTGGAG	1 cut(s)	333
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	5 cut(s)	60, 73, 212, 217, 418
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	481, 501
Hpy188I	TCNGA	2 cut(s)	145, 354
Hpy188III	TCNNGA	3 cut(s)	240, 415, 424
Hpy8I	GTNNAC	2 cut(s)	481, 501
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	7 cut(s)	63, 75, 131, 368, 372, 399, 504
HpyCH4III	ACNGT	2 cut(s)	307, 478
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	2 cut(s)	77, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 267
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	60, 73, 212, 217, 418
Kzo9I	GATC	2 cut(s)	140, 217
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	7 cut(s)	6, 174, 225, 234, 297, 357, 447
Lsp1109I	GCAGC	3 cut(s)	41, 55, 444
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	3 cut(s)	227, 447, 529
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	307, 367
MalI	GATC	2 cut(s)	142, 219
MboI	GATC	2 cut(s)	140, 217
MboII	GAAGA	2 cut(s)	228, 260
MflI	RGATCY	2 cut(s)	140, 217
MhlI	GDGCHC	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	3 cut(s)	21, 175, 501
MseI	TTAA	2 cut(s)	39, 336
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	26, 267
NciI	CCSGG	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	140, 217
NlaIII	CATG	5 cut(s)	60, 73, 212, 217, 418
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	307
PagI	TCATGA	1 cut(s)	414
PflMI	CCANNNNNTGG	1 cut(s)	467
PkrI	GCNGC	3 cut(s)	31, 45, 459
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	219
PsuI	RGATCY	2 cut(s)	140, 217
RsaI	GTAC	3 cut(s)	295, 402, 520
RsaNI	GTAC	3 cut(s)	294, 401, 519
SaqAI	TTAA	2 cut(s)	39, 336
SatI	GCNGC	3 cut(s)	30, 44, 458
Sau3AI	GATC	2 cut(s)	140, 217
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	272
SfaNI	GCATC	1 cut(s)	86
SspMI	CTAG	3 cut(s)	227, 447, 529
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	307, 478
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	423
TatI	WGTACW	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	39, 336
Tru9I	TTAA	2 cut(s)	39, 336
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	3 cut(s)	29, 43, 457
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	45, 261, 403, 431
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	480
XspI	CTAG	3 cut(s)	227, 447, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.