Rh7CG089200

subtilisin-like protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016592
Physical Location & Seq
Forward (+)
6729038 .. 6729622
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG089200.1

Sequence Viewer

Length: 585 bp
ATGACAGCATGGAAGACTGATCCATTTGGAGAGCCAATATTTGCTGAGGGGTCACCGCAAAAGCTTGCTGATCCATTTGATTATGGAGGTGGGATTGTGAACCCTAACAAGGCTGCAGACCCTGGTCTAATTTATGACATGGGCATTAATGACTACATAATTTACCTATGCGCTGTTGGGTACAACAACTCGGTGATTTCTCAACTTGTTGGGAATTCGACAACATGTTCTAGTACAAAGCCTTCTGTTCTTGATGTGAACCTGCCATCCATTACCATTCCAAATCTAAGAGAGAACATTACGCTCACCAGAAGTGTCACAAATGTTGGTCCAGTTAACTCAACATACAGAGCTCGGATAAGCCCTCCATTGGGAATCAGTGTGGCTGTGAGGCCTGAAACCTTGGTTTTCAACTCGGACATTAAAACAATCTCTTTCACAGTTGCGGTTTCTACCACCCATGAAGTGAACACAGGGTACTACTTTGGAACCCTTGCTTGGACTGATGATGATGGGGGGCATGTGGTGACAATTTCCATATCTGTTAGGACACAAATCATTCGATATTATGCAGATGGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

194

Amino Acids

20.92

Weight (kDa)

4.84

Isoelectric Point (pI)

26.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 85 - 182 6.9e-27 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016592)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32980
malus_domestica MD14G1139200.v1.1
pyrus_communis pycom14g11490
rosa_chinensis RchiOBHm_Chr5g0002201
rosa_multiflora Rmu_sc0001492.1_g000003
rosa_roxburghii Rroxscaffold_3G00267180
rosa_rugosa Rorug06G0483500
rosa_samantha Rh5AG017200 Rh7AG088600 Rh7BG090000 Rh7BG090400 Rh7CG089200 Rh7CG089400 Rh7DG090800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 270
AciI CCGC 2 cut(s) 56, 446
AclWI GGATC 2 cut(s) 14, 65
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 3 cut(s) 182, 235, 479
AfiI CCNNNNNNNGG 4 cut(s) 109, 370, 371, 498
AflIII ACRYGT 1 cut(s) 224
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 2 cut(s) 64, 353
AluI AGCT 2 cut(s) 64, 353
Alw21I GWGCWC 1 cut(s) 355
AlwI GGATC 2 cut(s) 14, 65
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 214
AseI ATTAAT 1 cut(s) 147
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 4 cut(s) 45, 205, 298, 538
AvaII GGWCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 355
BarI GAAGNNNNNNTAC 2 cut(s) 226, 258
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 355
BbvCI CCTCAGC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 100
BccI CCATC 3 cut(s) 274, 506, 569
BciT130I CCWGG 1 cut(s) 123
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 1 cut(s) 123
BoxI GACNNNNGTC 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 121, 402
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 370, 371, 498
Bse1I ACTGG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 121, 402
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 4 cut(s) 109, 370, 371, 498
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 355
BslI CCNNNNNNNGG 4 cut(s) 109, 370, 371, 498
BsnI GGCC 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 2 cut(s) 19, 70
BspACI CCGC 2 cut(s) 56, 446
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 2 cut(s) 14, 65
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 121, 402
BssMI GATC 2 cut(s) 19, 70
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 45, 287
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 2 cut(s) 22, 73
BstMBI GATC 2 cut(s) 19, 70
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 2 cut(s) 228, 524
BstPAI GACNNNNGTC 1 cut(s) 123
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 394
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 385
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 122
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 3 cut(s) 181, 234, 478
CviAII CATG 5 cut(s) 9, 139, 225, 461, 521
CviJI RGCY 8 cut(s) 34, 64, 113, 241, 353, 363, 386, 394
CviKI_1 RGCY 8 cut(s) 34, 64, 113, 241, 353, 363, 386, 394
CviQI GTAC 3 cut(s) 181, 234, 478
DdeI CTNAG 2 cut(s) 45, 287
DpnI GATC 2 cut(s) 21, 72
DpnII GATC 2 cut(s) 19, 70
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 402
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 329
Eco53kI GAGCTC 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 5 cut(s) 12, 142, 228, 464, 524
FatI CATG 5 cut(s) 8, 138, 224, 460, 520
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 394
HhaI GCGC 1 cut(s) 173
Hin1II CATG 5 cut(s) 12, 142, 228, 464, 524
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 1 cut(s) 375
HpaI GTTAAC 1 cut(s) 337
HphI GGTGA 4 cut(s) 45, 205, 298, 538
Hpy166II GTNNAC 4 cut(s) 100, 259, 337, 469
Hpy188I TCNGA 2 cut(s) 357, 418
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 4 cut(s) 100, 259, 337, 469
HpyAV CCTTC 1 cut(s) 252
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 2 cut(s) 116, 572
HpyF3I CTNAG 2 cut(s) 45, 287
Hsp92II CATG 5 cut(s) 12, 142, 228, 464, 524
HspAI GCGC 1 cut(s) 171
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 2 cut(s) 19, 70
LpnPI CCDG 7 cut(s) 108, 135, 275, 322, 345, 408, 459
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 3 cut(s) 51, 316, 526
MalI GATC 2 cut(s) 21, 72
MboI GATC 2 cut(s) 19, 70
MboII GAAGA 1 cut(s) 25
MfeI CAATTG 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 5 cut(s) 129, 159, 214, 531, 580
MnlI CCTC 4 cut(s) 40, 80, 375, 384
MseI TTAA 3 cut(s) 147, 336, 423
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 580
MvaI CCWGG 1 cut(s) 123
NdeII GATC 2 cut(s) 19, 70
NlaIII CATG 5 cut(s) 12, 142, 228, 464, 524
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 3 cut(s) 51, 316, 526
NspI RCATGY 2 cut(s) 228, 524
PceI AGGCCT 1 cut(s) 394
PciI ACATGT 1 cut(s) 224
PfeI GAWTC 1 cut(s) 375
PkrI GCNGC 1 cut(s) 115
PscI ACATGT 1 cut(s) 224
PshAI GACNNNNGTC 1 cut(s) 123
PshBI ATTAAT 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 121
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 1 cut(s) 329
PsrI GAACNNNNNNTAC 2 cut(s) 461, 493
PstI CTGCAG 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 122
RsaI GTAC 3 cut(s) 182, 235, 479
RsaNI GTAC 3 cut(s) 181, 234, 478
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 3 cut(s) 147, 336, 423
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 19, 70
Sau96I GGNCC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 355
SetI ASST 6 cut(s) 66, 91, 168, 264, 355, 404
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 329
Sse9I AATT 5 cut(s) 129, 159, 214, 531, 580
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 2 cut(s) 56, 446
SspI AATATT 1 cut(s) 39
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 1 cut(s) 355
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 2 cut(s) 218, 562
TasI AATT 5 cut(s) 129, 159, 214, 531, 580
TatI WGTACW 1 cut(s) 233
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 3 cut(s) 147, 336, 423
Tru9I TTAA 3 cut(s) 147, 336, 423
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 3 cut(s) 51, 316, 526
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 3 cut(s) 51, 316, 526
TspDTI ATGAA 1 cut(s) 477
TspRI CASTG 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 329
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 1 cut(s) 214
XceI RCATGY 2 cut(s) 228, 524
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.