Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010661

Physical Location & Seq

Genomic Coordinates Reverse (-)

69791967 .. 69796189

Gene Structure 4223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG502300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGTGGAATACTTGCCGTTCTGGGTTGCTCCGATGACTCTCAGGCCAAAAGGGTCAGGGTTCTCGAGCTTTCTCGCAGGTACGTCAATGGAGAGATTTACAACCATGAAGAACTGAGGAAGCGTCTGCCGAATCACAAGTTCCGAACCGGCAGTGATTGTGATGTCATTGCCCATCTGTATGAAGAGTATGGGGAGAACTTTGTGGACATGCTTGATGGCATGTTCTCTTTTGTGCTGCTGGATACCCGGGACAACAGCTTCATTGTTGCTCGTGATGCTATTGGAATCACTTCCCTCTACATGGGCTGGAGTCTTGATGTATTCCATGTTCCTAAATTAACAGGAATGGGTTTGGTATTGAACCAAGCCCAGGATTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

128

Amino Acids

14.61

Weight (kDa)

5.1

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_7	PF13537	29 - 105	1.6e-27	Glutamine amidotransferase domain
GATase_6	PF13522	29 - 105	2.7e-21	Glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47340 AT3G47340 AT3G47340 AT3G47340
fragaria_vesca	FvH4_3g38970 FvH4_3g38970
malus_domestica	MD03G1066000.v1.1 MD11G1070800.v1.1
prunus_persica	Prupe.6G054800_v2.0.a1 Prupe.6G054800_v2.0.a1
pyrus_communis	pycom03g05280 pycom11g05920
rosa_chinensis	RchiOBHm_Chr5g0070221
rosa_multiflora	Rmu_sc0002156.1_g000011 Rmu_sc0024476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010910
rosa_rugosa	Rorug05G0404300
rosa_samantha	Rh5CG502300 Rh5DG490200
rosa_wichuraiana	Rw5G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	304, 373
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	2 cut(s)	70, 261
AluI	AGCT	2 cut(s)	70, 261
Ama87I	CYCGRG	2 cut(s)	65, 249
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	292
AsuC2I	CCSGG	2 cut(s)	250, 251
AvaI	CYCGRG	2 cut(s)	65, 249
BauI	CACGAG	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	183, 212
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	374
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	2 cut(s)	250, 251
BfuAI	ACCTGC	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	3 cut(s)	250, 251, 374
BmeT110I	CYCGRG	2 cut(s)	65, 249
BmrFI	CCNGG	3 cut(s)	250, 251, 374
BmsI	GCATC	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	331
BpuMI	CCSGG	2 cut(s)	250, 251
BsaJI	CCNNGG	2 cut(s)	249, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 373
Bse118I	RCCGGY	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	249, 372
BseLI	CCNNNNNNNGG	2 cut(s)	304, 373
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	56, 107
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	1 cut(s)	47
BsiHKCI	CYCGRG	2 cut(s)	65, 249
BsiSI	CCGG	2 cut(s)	150, 250
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	304, 373
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	2 cut(s)	65, 249
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	55, 108
BspMI	ACCTGC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	249, 372
BssSI	CACGAG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	374
Bst6I	CTCTTC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	42, 116
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	2 cut(s)	214, 226
BstSCI	CCNGG	3 cut(s)	248, 249, 372
BstV1I	GCAGC	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
BveI	ACCTGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	149
Cfr9I	CCCGGG	1 cut(s)	249
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	5 cut(s)	107, 211, 223, 304, 329
CviJI	RGCY	5 cut(s)	47, 70, 261, 309, 371
CviKI_1	RGCY	5 cut(s)	47, 70, 261, 309, 371
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	42, 116
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco88I	CYCGRG	2 cut(s)	65, 249
EcoRII	CCWGG	1 cut(s)	372
FaeI	CATG	5 cut(s)	110, 214, 226, 307, 332
FaiI	YATR	8 cut(s)	108, 183, 192, 212, 224, 305, 330, 381
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	5 cut(s)	106, 210, 222, 303, 328
Fnu4HI	GCNGC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	2 cut(s)	150, 250
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	5 cut(s)	110, 214, 226, 307, 332
HinfI	GANTC	4 cut(s)	38, 133, 288, 313
HpaII	CCGG	2 cut(s)	150, 250
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	34, 146
Hpy188III	TCNNGA	3 cut(s)	65, 275, 317
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	42, 116
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	110, 214, 226, 307, 332
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	268
MaeII	ACGT	1 cut(s)	84
MboII	GAAGA	2 cut(s)	122, 197
MluCI	AATT	1 cut(s)	338
MlyI	GAGTC	2 cut(s)	32, 322
MnlI	CCTC	2 cut(s)	111, 308
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	2 cut(s)	150, 250
MspR9I	CCNGG	3 cut(s)	250, 251, 374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	2 cut(s)	250, 251
NlaIII	CATG	5 cut(s)	110, 214, 226, 307, 332
NspI	RCATGY	2 cut(s)	214, 226
PaeR7I	CTCGAG	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	133, 288
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	2 cut(s)	32, 321
PpsI	GAGTC	2 cut(s)	32, 321
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	1 cut(s)	239
SchI	GAGTC	2 cut(s)	32, 322
ScrFI	CCNGG	3 cut(s)	250, 251, 374
SetI	ASST	4 cut(s)	72, 83, 87, 263
SfaNI	GCATC	1 cut(s)	268
Sfr274I	CTCGAG	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	65
SmaI	CCCGGG	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	248, 249, 372
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	338
TfiI	GAWTC	2 cut(s)	133, 288
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	3 cut(s)	123, 198, 253
TspMI	CCCGGG	1 cut(s)	249
TspRI	CASTG	1 cut(s)	160
XceI	RCATGY	2 cut(s)	214, 226
XhoI	CTCGAG	1 cut(s)	65
XmaI	CCCGGG	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.