Rh6AG356500

Exopolygalacturonase clone

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016557
Physical Location & Seq
Forward (+)
55618517 .. 55621328
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG356500.1

Sequence Viewer

Length: 1236 bp
ATGTCTATGGGATTGAGCTCGCCAAACATGGACACCGCAAGGAGATTGGAGGCTATTCTTCTCGTAGGCTTAGTTTTTCTCGCTTGCGCGGCCAATGGTGCATCCCGTGGACATCTTTTTGGGGTTGGTGCACCTCGTCGGAGCCTCACTGATACTACGAACCGAAAAGTATTCGACGTCACAGCCTTCGGTGCTAAGCCCGAAGCCGGCGATTCAAAAGGACGCAAAATGAGAGAGCTTCCCGGCGGTGGAGATATAGACGCTCCTCTACCACAACTTCCCGTCGCTGGTGGCGGCGACTCCGGCAGCGATGATAGGAATGATGACGGTTCGAATCCCGATGCTGACAATGATACTGGAATGGCATTCATTAAGACGTGGGTGGCCGCATGCAGGGGAGAGTACAAGGGTCCAGCAAAGGTTCTTATTCCAAAAGGCACATTTTTGGCTGGACCTGTTGTGTTCCAAGGGCCATGCACCAGCTCGAAGGAGCCAATCGTTTTGGAAATTCAGGGAGAAGTGAAAGCCACCACCGATTTGAGTGATTATTCCTCTCCTGAATGGATCTCGTTCGAAAATATTGACGGTTTGATTGTCACCGGTGATGGAGTTATCAATGGCCAAGGCGAGAAAACATGGAACGGTGCCGGCTGCCATAGCGATGACTGCCCTCATTCCCCATCCAACATAAAATTCCAGAAGGTTAAGAATGCACTTATCGAGGGGATCACATCCTTGAACAGCAAGTACTTTCATTACCACATCACCGACTCCAGCAACGTTACCATGAACAATGTGCACATTACTGCCCCTGGCGATAGCCCTAACACAGACGGCTGCCACATCAGTAATTCCGACAACGTCAAAGTGATCAACAGCATCATCGGAACCGGGGACGACTGCGTTTCCGTCGGCCAGGGCGCCCGCCAAGTTACCATCAACAACGTTACTTGCGGCCCTGGCCATGGCATCAGTGTTGGAAGTCTTGGTAAGTACAAGGACGAGCAGCCCGTGGTCGGTGTCACGGTGACCAATTGCACATTGTTGAACACAACCAACGGCGCCAGAATCAAAACTTGGGCCGGGCCGAACAGAGGAGAAGCAAGAGGAATTATATTCGATAACCTCGTCTTGGACCATGTGAAGGCCCCAATTGTCATCGATCAACACTATGGAGAAAAGAAAAGTGGGGGAGACAATAAAAATGCGGTAATTAATTCAGTAATTCAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

411

Amino Acids

43.2

Weight (kDa)

5.69

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 138 - 405 9.8e-78 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016557)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26010
malus_domestica MD03G1291400.v1.1 MD11G1306900.v1.1
prunus_persica Prupe.8G264500_v2.0.a1
pyrus_communis pycom03g23080 pycom11g26850
rosa_chinensis RchiOBHm_Chr6g0294381
rosa_laevigata RLG00000011876
rosa_multiflora Rmu_sc0005369.1_g000014
rosa_roxburghii Rroxscaffold_7G00173430
rosa_rugosa Rorug06G0243900
rosa_samantha Rh6AG356500 Rh6CG370500
rosa_wichuraiana Rw6G031070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccB1I GGYRCC 3 cut(s) 644, 920, 1061
AccII CGCG 1 cut(s) 89
AciI CCGC 8 cut(s) 36, 89, 246, 294, 387, 925, 954, 1208
AclI AACGTT 2 cut(s) 780, 945
AclWI GGATC 2 cut(s) 572, 734
AcoI YGGCCR 5 cut(s) 90, 384, 619, 913, 961
AcsI RAATTY 2 cut(s) 507, 692
AcyI GRCGYC 3 cut(s) 177, 921, 1062
AfaI GTAC 3 cut(s) 404, 749, 995
AfiI CCNNNNNNNGG 9 cut(s) 206, 248, 287, 393, 965, 1016, 1094, 1132, 1144
AgeI ACCGGT 1 cut(s) 599
AgsI TTSAA 4 cut(s) 216, 739, 1048, 1229
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 3 cut(s) 811, 915, 958
AjuI GAANNNNNNNTTGG 4 cut(s) 677, 709, 1060, 1092
AluBI AGCT 3 cut(s) 18, 238, 483
AluI AGCT 3 cut(s) 18, 238, 483
Alw21I GWGCWC 3 cut(s) 20, 133, 801
Alw26I GTCTC 1 cut(s) 1188
Alw44I GTGCAC 2 cut(s) 129, 797
AlwI GGATC 2 cut(s) 572, 734
ApaLI GTGCAC 2 cut(s) 129, 797
ApeKI GCWGC 4 cut(s) 306, 651, 837, 1006
ApoI RAATTY 2 cut(s) 507, 692
AseI ATTAAT 1 cut(s) 1215
AsiGI ACCGGT 1 cut(s) 599
AspLEI GCGC 3 cut(s) 89, 923, 1064
AspS9I GGNCC 8 cut(s) 410, 452, 470, 956, 1080, 1085, 1135, 1147
AsuC2I CCSGG 3 cut(s) 243, 892, 1084
AsuHPI GGTGA 4 cut(s) 589, 614, 757, 1039
AsuII TTCGAA 2 cut(s) 332, 573
AvaII GGWCC 3 cut(s) 410, 452, 1135
BaeGI GKGCMC 2 cut(s) 133, 801
BalI TGGCCA 2 cut(s) 621, 963
BanI GGYRCC 3 cut(s) 644, 920, 1061
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 3 cut(s) 20, 133, 801
BbvI GCAGC 4 cut(s) 318, 638, 824, 1018
BccI CCATC 3 cut(s) 599, 688, 944
BceAI ACGGC 2 cut(s) 850, 1075
BciT130I CCWGG 3 cut(s) 813, 917, 960
BclI TGATCA 1 cut(s) 870
BcnI CCSGG 3 cut(s) 243, 892, 1084
BcoDI GTCTC 1 cut(s) 1188
BfaI CTAG 1 cut(s) 1234
BfoI RGCGCY 2 cut(s) 924, 1065
BisI GCNGC 8 cut(s) 90, 295, 307, 387, 652, 838, 955, 1007
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 8 cut(s) 91, 296, 308, 388, 653, 839, 956, 1008
BmcAI AGTACT 1 cut(s) 749
Bme1390I CCNGG 6 cut(s) 243, 813, 892, 917, 960, 1084
Bme18I GGWCC 3 cut(s) 410, 452, 1135
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 8 cut(s) 410, 452, 470, 956, 1080, 1085, 1135, 1147
BmiI GGNNCC 8 cut(s) 143, 411, 492, 646, 889, 922, 1063, 1149
BmrFI CCNGG 6 cut(s) 243, 813, 892, 917, 960, 1084
BmsI GCATC 4 cut(s) 110, 331, 888, 978
BpmI CTGGAG 1 cut(s) 757
Bpu1102I GCTNAGC 1 cut(s) 195
Bpu14I TTCGAA 2 cut(s) 332, 573
BpuMI CCSGG 3 cut(s) 243, 892, 1084
Bsa29I ATCGAT 1 cut(s) 1161
BsaHI GRCGYC 3 cut(s) 177, 921, 1062
BsaJI CCNNGG 9 cut(s) 106, 466, 622, 811, 891, 916, 958, 964, 1011
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 9 cut(s) 206, 248, 287, 393, 965, 1016, 1094, 1132, 1144
Bse118I RCCGGY 3 cut(s) 206, 599, 647
Bse1I ACTGG 1 cut(s) 361
BseBI CCWGG 3 cut(s) 813, 917, 960
BseCI ATCGAT 1 cut(s) 1161
BseDI CCNNGG 9 cut(s) 106, 466, 622, 811, 891, 916, 958, 964, 1011
BseGI GGATG 3 cut(s) 101, 680, 731
BseLI CCNNNNNNNGG 9 cut(s) 206, 248, 287, 393, 965, 1016, 1094, 1132, 1144
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 2 cut(s) 255, 1110
BseSI GKGCMC 2 cut(s) 133, 801
BseXI GCAGC 4 cut(s) 318, 638, 824, 1018
Bsh1236I CGCG 1 cut(s) 89
BshNI GGYRCC 3 cut(s) 644, 920, 1061
BshTI ACCGGT 1 cut(s) 599
BshVI ATCGAT 1 cut(s) 1161
BsiHKAI GWGCWC 3 cut(s) 20, 133, 801
BsiSI CCGG 7 cut(s) 207, 243, 303, 600, 648, 891, 1083
BslFI GGGAC 1 cut(s) 908
BslI CCNNNNNNNGG 9 cut(s) 206, 248, 287, 393, 965, 1016, 1094, 1132, 1144
BsmAI GTCTC 1 cut(s) 1188
BsmFI GGGAC 1 cut(s) 908
BsmI GAATGC 2 cut(s) 365, 715
Bsp119I TTCGAA 2 cut(s) 332, 573
Bsp1286I GDGCHC 3 cut(s) 20, 133, 801
Bsp143I GATC 4 cut(s) 564, 726, 870, 1162
Bsp1720I GCTNAGC 1 cut(s) 195
Bsp19I CCATGG 1 cut(s) 964
BspACI CCGC 8 cut(s) 36, 89, 246, 294, 387, 925, 954, 1208
BspDI ATCGAT 1 cut(s) 1161
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 8 cut(s) 143, 411, 492, 646, 889, 922, 1063, 1149
BspPI GGATC 2 cut(s) 572, 734
BspT104I TTCGAA 2 cut(s) 332, 573
BspT107I GGYRCC 3 cut(s) 644, 920, 1061
BsrFI RCCGGY 3 cut(s) 206, 599, 647
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 3 cut(s) 206, 599, 647
BssECI CCNNGG 9 cut(s) 106, 466, 622, 811, 891, 916, 958, 964, 1011
BssMI GATC 4 cut(s) 564, 726, 870, 1162
BssNI GRCGYC 3 cut(s) 177, 921, 1062
BssT1I CCWWGG 3 cut(s) 466, 622, 964
Bst2UI CCWGG 3 cut(s) 813, 917, 960
Bst4CI ACNGT 4 cut(s) 329, 587, 644, 1027
BstACI GRCGYC 3 cut(s) 177, 921, 1062
BstBI TTCGAA 2 cut(s) 332, 573
BstC8I GCNNGC 6 cut(s) 20, 85, 208, 391, 649, 925
BstDEI CTNAG 2 cut(s) 70, 195
BstDSI CCRYGG 3 cut(s) 106, 964, 1011
BstEII GGTNACC 1 cut(s) 1027
BstF5I GGATG 3 cut(s) 101, 680, 731
BstFNI CGCG 1 cut(s) 89
BstH2I RGCGCY 2 cut(s) 924, 1065
BstHHI GCGC 3 cut(s) 89, 923, 1064
BstKTI GATC 4 cut(s) 567, 729, 873, 1165
BstMAI GTCTC 1 cut(s) 1188
BstMBI GATC 4 cut(s) 564, 726, 870, 1162
BstMWI GCNNNNNNNGC 7 cut(s) 89, 98, 191, 303, 657, 666, 960
BstNI CCWGG 3 cut(s) 813, 917, 960
BstNSI RCATGY 1 cut(s) 393
BstPI GGTNACC 1 cut(s) 1027
BstSCI CCNGG 6 cut(s) 241, 811, 890, 915, 958, 1082
BstSLI GKGCMC 2 cut(s) 133, 801
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 4 cut(s) 318, 638, 824, 1018
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
Bsu15I ATCGAT 1 cut(s) 1161
BsuTUI ATCGAT 1 cut(s) 1161
BtgI CCRYGG 3 cut(s) 106, 964, 1011
BtgZI GCGATG 2 cut(s) 324, 675
BtrI CACGTC 1 cut(s) 378
BtsCI GGATG 3 cut(s) 101, 680, 731
BtsIMutI CAGTG 2 cut(s) 147, 979
Cac8I GCNNGC 6 cut(s) 20, 85, 208, 391, 649, 925
CfoI GCGC 3 cut(s) 89, 923, 1064
Cfr10I RCCGGY 3 cut(s) 206, 599, 647
Cfr13I GGNCC 8 cut(s) 410, 452, 470, 956, 1080, 1085, 1135, 1147
ClaI ATCGAT 1 cut(s) 1161
CseI GACGC 2 cut(s) 231, 269
Csp6I GTAC 3 cut(s) 403, 748, 994
CspAI ACCGGT 1 cut(s) 599
CviAII CATG 7 cut(s) 28, 390, 474, 636, 787, 965, 1139
CviQI GTAC 3 cut(s) 403, 748, 994
DdeI CTNAG 2 cut(s) 70, 195
DinI GGCGCC 2 cut(s) 922, 1063
DpnI GATC 4 cut(s) 566, 728, 872, 1164
DpnII GATC 4 cut(s) 564, 726, 870, 1162
EaeI YGGCCR 5 cut(s) 90, 384, 619, 913, 961
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 3 cut(s) 466, 622, 964
Eco24I GRGCYC 1 cut(s) 20
Eco47I GGWCC 3 cut(s) 410, 452, 1135
Eco53kI GAGCTC 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 1027
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 1147
EcoO65I GGTNACC 1 cut(s) 1027
EcoRII CCWGG 3 cut(s) 811, 915, 958
EcoT14I CCWWGG 3 cut(s) 466, 622, 964
EcoT38I GRGCYC 1 cut(s) 20
EgeI GGCGCC 2 cut(s) 922, 1063
EheI GGCGCC 2 cut(s) 922, 1063
ErhI CCWWGG 3 cut(s) 466, 622, 964
FaeI CATG 7 cut(s) 31, 393, 477, 639, 790, 968, 1142
FaqI GGGAC 1 cut(s) 908
FatI CATG 7 cut(s) 27, 389, 473, 635, 786, 964, 1138
FauI CCCGC 1 cut(s) 932
FbaI TGATCA 1 cut(s) 870
Fnu4HI GCNGC 8 cut(s) 90, 295, 307, 387, 652, 838, 955, 1007
FokI GGATG 3 cut(s) 88, 667, 718
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 8 cut(s) 90, 295, 307, 387, 652, 838, 955, 1007
FspBI CTAG 1 cut(s) 1234
GlaI GCGC 3 cut(s) 88, 922, 1063
GluI GCNGC 8 cut(s) 90, 295, 307, 387, 652, 838, 955, 1007
GsuI CTGGAG 1 cut(s) 757
HaeII RGCGCY 2 cut(s) 924, 1065
HapII CCGG 7 cut(s) 207, 243, 303, 600, 648, 891, 1083
HgaI GACGC 2 cut(s) 231, 269
HhaI GCGC 3 cut(s) 89, 923, 1064
Hin1I GRCGYC 3 cut(s) 177, 921, 1062
Hin1II CATG 7 cut(s) 31, 393, 477, 639, 790, 968, 1142
Hin6I GCGC 3 cut(s) 87, 921, 1062
HinP1I GCGC 3 cut(s) 87, 921, 1062
HinfI GANTC 5 cut(s) 212, 299, 334, 770, 1068
HpaII CCGG 7 cut(s) 207, 243, 303, 600, 648, 891, 1083
HphI GGTGA 4 cut(s) 589, 614, 757, 1039
Hpy166II GTNNAC 3 cut(s) 110, 131, 799
Hpy188I TCNGA 3 cut(s) 141, 856, 887
Hpy188III TCNNGA 3 cut(s) 338, 557, 697
Hpy8I GTNNAC 3 cut(s) 110, 131, 799
Hpy99I CGWCG 4 cut(s) 141, 179, 287, 914
HpyAV CCTTC 4 cut(s) 196, 481, 694, 1138
HpyCH4III ACNGT 4 cut(s) 329, 587, 644, 1027
HpyCH4IV ACGT 5 cut(s) 177, 377, 780, 861, 945
HpyCH4V TGCA 7 cut(s) 101, 131, 393, 477, 713, 799, 1038
HpyF10VI GCNNNNNNNGC 7 cut(s) 89, 98, 191, 303, 657, 666, 960
HpyF3I CTNAG 2 cut(s) 70, 195
HpySE526I ACGT 5 cut(s) 177, 377, 780, 861, 945
Hsp92I GRCGYC 3 cut(s) 177, 921, 1062
Hsp92II CATG 7 cut(s) 31, 393, 477, 639, 790, 968, 1142
HspAI GCGC 3 cut(s) 87, 921, 1062
KasI GGCGCC 2 cut(s) 920, 1061
KroI GCCGGC 2 cut(s) 206, 647
KroNI GCCGGC 2 cut(s) 208, 649
Ksp22I TGATCA 1 cut(s) 870
Kzo9I GATC 4 cut(s) 564, 726, 870, 1162
LmnI GCTCC 3 cut(s) 141, 268, 490
Lsp1109I GCAGC 4 cut(s) 318, 638, 824, 1018
LweI GCATC 4 cut(s) 110, 331, 888, 978
MaeI CTAG 1 cut(s) 1234
MaeII ACGT 5 cut(s) 177, 377, 780, 861, 945
MaeIII GTNAC 7 cut(s) 178, 595, 781, 931, 946, 1021, 1027
MalI GATC 4 cut(s) 566, 728, 872, 1164
MboI GATC 4 cut(s) 564, 726, 870, 1162
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 2 cut(s) 1033, 1152
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 3 cut(s) 20, 133, 801
MlsI TGGCCA 2 cut(s) 621, 963
MluNI TGGCCA 2 cut(s) 621, 963
Mly113I GGCGCC 2 cut(s) 921, 1062
MlyI GAGTC 2 cut(s) 293, 764
MmeI TCCRAC 4 cut(s) 119, 708, 879, 958
Mox20I TGGCCA 2 cut(s) 621, 963
MroNI GCCGGC 2 cut(s) 206, 647
MscI TGGCCA 2 cut(s) 621, 963
MseI TTAA 3 cut(s) 372, 705, 1215
MslI CAYNNNNRTG 1 cut(s) 660
Msp20I TGGCCA 2 cut(s) 621, 963
MspI CCGG 7 cut(s) 207, 243, 303, 600, 648, 891, 1083
MspR9I CCNGG 6 cut(s) 243, 813, 892, 917, 960, 1084
MunI CAATTG 2 cut(s) 1033, 1152
Mva1269I GAATGC 2 cut(s) 365, 715
MvaI CCWGG 3 cut(s) 813, 917, 960
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 7 cut(s) 89, 98, 191, 303, 657, 666, 960
NaeI GCCGGC 2 cut(s) 208, 649
NarI GGCGCC 2 cut(s) 921, 1062
NciI CCSGG 3 cut(s) 243, 892, 1084
NcoI CCATGG 1 cut(s) 964
NdeII GATC 4 cut(s) 564, 726, 870, 1162
NgoMIV GCCGGC 2 cut(s) 206, 647
NlaIII CATG 7 cut(s) 31, 393, 477, 639, 790, 968, 1142
NlaIV GGNNCC 8 cut(s) 143, 411, 492, 646, 889, 922, 1063, 1149
NmuCI GTSAC 4 cut(s) 178, 595, 1021, 1027
NspI RCATGY 1 cut(s) 393
NspV TTCGAA 2 cut(s) 332, 573
PaeI GCATGC 1 cut(s) 393
PcsI WCGNNNNNNNCGW 2 cut(s) 1008, 1125
PctI GAATGC 2 cut(s) 365, 715
PdiI GCCGGC 2 cut(s) 208, 649
PfeI GAWTC 3 cut(s) 212, 334, 1068
PflFI GACNNNGTC 1 cut(s) 860
PinAI ACCGGT 1 cut(s) 599
PkrI GCNGC 8 cut(s) 91, 296, 308, 388, 653, 839, 956, 1008
PleI GAGTC 2 cut(s) 293, 764
PluTI GGCGCC 2 cut(s) 924, 1065
PpsI GAGTC 2 cut(s) 293, 764
PshBI ATTAAT 1 cut(s) 1215
Psp124BI GAGCTC 1 cut(s) 20
Psp1406I AACGTT 2 cut(s) 780, 945
Psp6I CCWGG 3 cut(s) 811, 915, 958
PspEI GGTNACC 1 cut(s) 1027
PspGI CCWGG 3 cut(s) 811, 915, 958
PspN4I GGNNCC 8 cut(s) 143, 411, 492, 646, 889, 922, 1063, 1149
PspPI GGNCC 8 cut(s) 410, 452, 470, 956, 1080, 1085, 1135, 1147
PsrI GAACNNNNNNTAC 2 cut(s) 731, 763
PsuI RGATCY 1 cut(s) 564
PsyI GACNNNGTC 1 cut(s) 860
RsaI GTAC 3 cut(s) 404, 749, 995
RsaNI GTAC 3 cut(s) 403, 748, 994
RseI CAYNNNNRTG 1 cut(s) 660
SacI GAGCTC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 372, 705, 1215
SatI GCNGC 8 cut(s) 90, 295, 307, 387, 652, 838, 955, 1007
Sau3AI GATC 4 cut(s) 564, 726, 870, 1162
Sau96I GGNCC 8 cut(s) 410, 452, 470, 956, 1080, 1085, 1135, 1147
ScaI AGTACT 1 cut(s) 749
SchI GAGTC 2 cut(s) 293, 764
ScrFI CCNGG 6 cut(s) 243, 813, 892, 917, 960, 1084
SduI GDGCHC 3 cut(s) 20, 133, 801
SfaNI GCATC 4 cut(s) 110, 331, 888, 978
SfoI GGCGCC 2 cut(s) 922, 1063
SfuI TTCGAA 2 cut(s) 332, 573
SgrAI CRCCGGYG 1 cut(s) 599
SinI GGWCC 3 cut(s) 410, 452, 1135
SmiMI CAYNNNNRTG 1 cut(s) 660
SphI GCATGC 1 cut(s) 393
SsiI CCGC 8 cut(s) 36, 89, 246, 294, 387, 925, 954, 1208
SspDI GGCGCC 2 cut(s) 920, 1061
SspI AATATT 1 cut(s) 580
SspMI CTAG 1 cut(s) 1234
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 6 cut(s) 241, 811, 890, 915, 958, 1082
StyI CCWWGG 3 cut(s) 466, 622, 964
TaaI ACNGT 4 cut(s) 329, 587, 644, 1027
TaiI ACGT 5 cut(s) 180, 380, 783, 864, 948
TaqI TCGA 7 cut(s) 174, 332, 485, 573, 720, 1119, 1161
TatI WGTACW 3 cut(s) 402, 747, 993
TauI GCSGC 4 cut(s) 92, 297, 389, 957
TfiI GAWTC 3 cut(s) 212, 334, 1068
Tru1I TTAA 3 cut(s) 372, 705, 1215
Tru9I TTAA 3 cut(s) 372, 705, 1215
TscAI CASTG 2 cut(s) 154, 979
TseFI GTSAC 4 cut(s) 178, 595, 1021, 1027
TseI GCWGC 4 cut(s) 306, 651, 837, 1006
Tsp45I GTSAC 4 cut(s) 178, 595, 1021, 1027
TspDTI ATGAA 3 cut(s) 358, 743, 803
TspGWI ACGGA 1 cut(s) 898
TspRI CASTG 2 cut(s) 154, 979
Tth111I GACNNNGTC 1 cut(s) 860
VneI GTGCAC 2 cut(s) 129, 797
VpaK11BI GGWCC 3 cut(s) 410, 452, 1135
VspI ATTAAT 1 cut(s) 1215
XapI RAATTY 2 cut(s) 507, 692
XceI RCATGY 1 cut(s) 393
XspI CTAG 1 cut(s) 1234
ZraI GACGTC 1 cut(s) 178
ZrmI AGTACT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.