Rh6CG207500
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
34491352 .. 34492332
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG207500.1

Sequence Viewer

Length: 312 bp
ATGGGAAGTTTCGAACCAGCTTTATCAGTACTAGATACAAAGCTCCAAGGCCTGCCAGATCAAATGGTTCAAGAGATGCTGCAAACACTTGGAATAGCAATGTTTTGTGTCAACTCTTCGCCAGCAGAACGACCTACCATGAAGGAAGTGGTGGCATTGCTAATGGAGGTTAAGAGCCAACCTGAAGAATGGGGAAAAACTTCTCAACCCCTAATAAAGCAGTCTTCAAATCAAATCAATCCTGATATTCGGGCAAATTTCAACCCAGAAAAAAAGGTGAAGGCAGAGCCTATGTTCATAGTGCCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

5.08

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014921)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34110 AT1G34110
fragaria_vesca FvH4_2g13450
malus_domestica MD05G1035300.v1.1 MD10G1037600.v1.1
prunus_persica Prupe.8G043000_v2.0.a1
pyrus_communis pycom05g02560
rosa_chinensis RchiOBHm_Chr6g0275071
rosa_laevigata RLG00000013500
rosa_multiflora Rmu_sc0000447.1_g000012
rosa_roxburghii Rroxscaffold_7G00193690
rosa_rugosa Rorug06G0087900
rosa_samantha Rh6AG202200 Rh6BG205600 Rh6CG207500 Rh6DG197400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 30
AgsI TTSAA 3 cut(s) 71, 228, 262
AluBI AGCT 2 cut(s) 20, 43
AluI AGCT 2 cut(s) 20, 43
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 289
AsuII TTCGAA 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 66
BfaI CTAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmcAI AGTACT 1 cut(s) 30
BmsI GCATC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 46
Bse3DI GCAATG 2 cut(s) 105, 155
BseDI CCNNGG 1 cut(s) 46
BseMI GCAATG 2 cut(s) 105, 155
BseXI GCAGC 1 cut(s) 66
BshFI GGCC 1 cut(s) 51
BsnI GGCC 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 12
Bsp143I GATC 1 cut(s) 58
BspANI GGCC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 105, 155
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 53, 123
BstDEI CTNAG 1 cut(s) 309
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 216
BsuRI GGCC 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 53, 123
Csp6I GTAC 1 cut(s) 29
CviAII CATG 1 cut(s) 139
CviJI RGCY 5 cut(s) 20, 43, 51, 177, 289
CviKI_1 RGCY 5 cut(s) 20, 43, 51, 177, 289
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 46
Eco147I AGGCCT 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 142
FaiI YATR 3 cut(s) 140, 293, 299
FatI CATG 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 32
GluI GCNGC 1 cut(s) 80
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 1 cut(s) 142
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 71, 242
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 136, 274
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 1 cut(s) 142
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 7 cut(s) 30, 65, 69, 135, 195, 255, 279
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 32
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 3 cut(s) 108, 197, 216
MluCI AATT 1 cut(s) 256
MnlI CCTC 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 199
MseI TTAA 1 cut(s) 171
NdeII GATC 1 cut(s) 58
NlaIII CATG 1 cut(s) 142
NspV TTCGAA 1 cut(s) 12
PceI AGGCCT 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 199
PkrI GCNGC 1 cut(s) 81
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 1 cut(s) 58
ScaI AGTACT 1 cut(s) 30
SetI ASST 6 cut(s) 22, 45, 136, 171, 184, 279
SfaNI GCATC 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 12
Sse9I AATT 1 cut(s) 256
SseBI AGGCCT 1 cut(s) 51
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 51
StyI CCWWGG 1 cut(s) 46
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 256
TatI WGTACW 1 cut(s) 28
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 155, 286
XapI RAATTY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 199
XspI CTAG 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.