Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0016208

Physical Location & Seq

Genomic Coordinates Forward (+)

6418580 .. 6421487

Gene Structure 2908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGGTTTTAAGCCTTCAACCTGTCCAATTTACCACCCCTAAACAACTCTCATATTGTAAAACCAGCACCACTGGTTATAGTACTAGTGTTCGATGTGGGATTGCAGAGCCATCAGGAGTTCCAGCTCCTATGGGGCAAAAGACCAAATACAATGATGGATTTTTTGAGAAAGCATTCATGACACTCTTCGCTCGCAAAATGAAGAGGTTTGTAGCTCCAGTGAAATCCAAGACTGAGATTGAGGAAAAGAAATGGTGGGAATATGACTATGAGAGTTTTGTGGACGTATCCAAGAGAGTTATGCAGGGAAGGTCTCGCATTCAGCAGCAACAAGTGGTTAGGGAGGTCTTGTTATCTATGCTACCTCCAGGTGCGCCTGCTCAGTTTAGGAAATTATTTCCACCAACAAAGTGGGCTGCAGAGTTCAATGCTGCATTAACAGTGCCTTTCTTCCACTGGTTAGTTGGGCCTTCTGAGGTTATAGAAGTTGAGGTAGAAGGAGTGAAGCAAAGAAGTGGAGTTCGTATAAAGAAATGCAGGTATAATCTATATTTGATCATGTACAGATTGAACAAAGCTGTTTCATCTTGTGCACAAACATTTCTTTTAGTACTGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4033

Protein Analysis

207

Amino Acids

23.72

Weight (kDa)

9.76

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64680 AT1G64680
fragaria_vesca	FvH4_5g10820
malus_domestica	MD14G1137300.v1.1
prunus_persica	Prupe.5G131200_v2.0.a1
pyrus_communis	pycom14g11240
rosa_chinensis	RchiOBHm_Chr7g0187341
rosa_laevigata	RLG00000004793
rosa_roxburghii	Rroxscaffold_3G00267590
rosa_rugosa	Rorug06G0480700
rosa_samantha	Rh7AG085200 Rh7BG077400 Rh7CG086200 Rh7DG087300
rosa_wichuraiana	Rw7G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	531
AfaI	GTAC	3 cut(s)	85, 566, 615
AgsI	TTSAA	3 cut(s)	20, 430, 574
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	3 cut(s)	128, 218, 581
AluI	AGCT	3 cut(s)	128, 218, 581
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	1 cut(s)	321
Alw44I	GTGCAC	1 cut(s)	594
AoxI	GGCC	1 cut(s)	470
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	3 cut(s)	328, 419, 434
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	3 cut(s)	340, 406, 421
BccI	CCATC	2 cut(s)	121, 152
BciT130I	CCWGG	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	301
BclI	TGATCA	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	321
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	531
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	3 cut(s)	329, 420, 435
BlsI	GCNGC	3 cut(s)	330, 421, 436
BmcAI	AGTACT	2 cut(s)	85, 615
Bme1390I	CCNGG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	470
BmrFI	CCNGG	1 cut(s)	372
BpmI	CTGGAG	2 cut(s)	204, 354
BsaI	GGTCTC	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bse1I	ACTGG	3 cut(s)	79, 221, 464
BseBI	CCWGG	1 cut(s)	372
BseMII	CTCAG	3 cut(s)	228, 398, 468
BseNI	ACTGG	3 cut(s)	79, 221, 464
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	3 cut(s)	340, 406, 421
BshFI	GGCC	1 cut(s)	472
BsiHKAI	GWGCWC	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	321
BsmI	GAATGC	2 cut(s)	176, 321
BsnI	GGCC	1 cut(s)	472
Bso31I	GGTCTC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	1 cut(s)	558
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	3 cut(s)	229, 397, 469
BspHI	TCATGA	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	531
BspTNI	GGTCTC	1 cut(s)	321
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	3 cut(s)	79, 221, 464
BssMI	GATC	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	2 cut(s)	194, 200
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	2 cut(s)	196, 381
BstDEI	CTNAG	3 cut(s)	237, 384, 477
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	1 cut(s)	561
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	558
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	598
BstV1I	GCAGC	3 cut(s)	340, 406, 421
BstXI	CCANNNNNNTGG	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	472
BtsIMutI	CAGTG	4 cut(s)	72, 228, 450, 457
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	2 cut(s)	196, 381
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	3 cut(s)	84, 565, 614
CviAII	CATG	2 cut(s)	181, 562
CviJI	RGCY	7 cut(s)	15, 112, 128, 218, 419, 472, 581
CviKI_1	RGCY	7 cut(s)	15, 112, 128, 218, 419, 472, 581
CviQI	GTAC	3 cut(s)	84, 565, 614
DdeI	CTNAG	3 cut(s)	237, 384, 477
DpnI	GATC	1 cut(s)	560
DpnII	GATC	1 cut(s)	558
Eam1104I	CTCTTC	2 cut(s)	194, 200
EarI	CTCTTC	2 cut(s)	194, 200
Eco31I	GGTCTC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	2 cut(s)	184, 565
FatI	CATG	2 cut(s)	180, 561
FbaI	TGATCA	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	329, 420, 435
Fsp4HI	GCNGC	3 cut(s)	329, 420, 435
FspBI	CTAG	1 cut(s)	87
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	3 cut(s)	329, 420, 435
GsuI	CTGGAG	2 cut(s)	204, 354
HaeIII	GGCC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	2 cut(s)	184, 565
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	286, 596
Hpy188I	TCNGA	1 cut(s)	478
Hpy188III	TCNNGA	2 cut(s)	117, 181
Hpy8I	GTNNAC	2 cut(s)	286, 596
HpyAV	CCTTC	4 cut(s)	26, 306, 483, 494
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	7 cut(s)	107, 307, 422, 437, 540, 596, 619
HpyF3I	CTNAG	3 cut(s)	237, 384, 477
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	184, 565
HspAI	GCGC	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	1 cut(s)	558
LmnI	GCTCC	2 cut(s)	133, 223
Lsp1109I	GCAGC	3 cut(s)	340, 406, 421
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	288
MalI	GATC	1 cut(s)	560
MboI	GATC	1 cut(s)	558
MboII	GAAGA	3 cut(s)	181, 217, 445
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	2 cut(s)	29, 395
MnlI	CCTC	6 cut(s)	201, 238, 340, 378, 472, 487
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	2 cut(s)	11, 440
MspR9I	CCNGG	1 cut(s)	372
Mva1269I	GAATGC	2 cut(s)	176, 321
MvaI	CCWGG	1 cut(s)	372
NdeII	GATC	1 cut(s)	558
NlaIII	CATG	2 cut(s)	184, 565
PagI	TCATGA	1 cut(s)	180
PctI	GAATGC	2 cut(s)	176, 321
PdmI	GAANNNNTTC	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	330, 421, 436
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	470
PstI	CTGCAG	1 cut(s)	424
RsaI	GTAC	3 cut(s)	85, 566, 615
RsaNI	GTAC	3 cut(s)	84, 565, 614
SaqAI	TTAA	2 cut(s)	11, 440
SatI	GCNGC	3 cut(s)	329, 420, 435
Sau3AI	GATC	1 cut(s)	558
Sau96I	GGNCC	1 cut(s)	470
ScaI	AGTACT	2 cut(s)	85, 615
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	598
SfcI	CTRYAG	1 cut(s)	420
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	2 cut(s)	29, 395
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	29, 395
TatI	WGTACW	3 cut(s)	83, 564, 613
Tru1I	TTAA	2 cut(s)	11, 440
Tru9I	TTAA	2 cut(s)	11, 440
TscAI	CASTG	4 cut(s)	79, 228, 450, 464
TseI	GCWGC	3 cut(s)	328, 419, 434
TspDTI	ATGAA	3 cut(s)	169, 218, 576
TspRI	CASTG	4 cut(s)	79, 228, 450, 464
VneI	GTGCAC	1 cut(s)	594
XcmI	CCANNNNNNNNNTGG	2 cut(s)	411, 464
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	87
ZrmI	AGTACT	2 cut(s)	85, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.