Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007282

Physical Location & Seq

Genomic Coordinates Forward (+)

36913121 .. 36915124

Gene Structure 2004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG353100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCCACTAAGCGAATTTATTGGGGTATGGCTCTCAAGGAACTCAAAGCAGGAAACTCCCACGTCTGCGGCCTAGTTGATGGGACTAATCGCCTCCAATGCTGGCAGTGGCATGGGTTCAATTCAAATACAAGTCACAGCAACTTCTCGAGGAGCATCGCAGTGGGAGACAAATTTGTCTGCGGAGTTTCAGAAATCGGAGAGGTAACTTGCACTGGAAGTAATACCAAAGTGATTGATACAAAGCATATAAGGGGTAACTACAGTCATGTAAGTGCAGGGTCTAATTATGCTTGTGCAATCTCATGGAGTAATGGTAGTTTGCATTGTTGGGGAGAAATGAAGGGTGACAAACCACAAGGGAAGTTTACTTCCCTGGCCTTGGGCAACAACCGAAGCTGTGGCTTGAGGCCTAATGGAACAGTTGTTTGTTGGGGGGAAGATGGCTTCAGTTTGCCTCAAAGTTTAAGAGAGACTTCCTTCACTTCAATCGAAGCAAAACGCAGCGTTTTCTGCGGGGTCTTGTCGAAGAATTTTTCCTTGTATTGCTGGGGAAACCAAGTGTTTGATACCCAAGACAATTTCTTGGTCTTCAGTGCTGTGAAGCCAGGGCCATGTAGAAGAGACTACTGCCCATTGATTTTGGACCCGAAGGTGCCGCCACCGACGCCATTTGAAATAGAGGCCGTGGCGTATGTGGGTTACTTAGCAGCAGACTGTGTGAGCCTAGAGGGCAGAGATAGGCCTTCCATGACTGAGATTGCAAGCAACTTGGAAAGAGCTTTAGCTTATTGTTTGGCATCGCCACCAAGTTCAAGAACCGAGTCTTTGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046983 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr RCC1_2

Protein Analysis

278

Amino Acids

30.37

Weight (kDa)

8.17

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47850
fragaria_vesca	FvH4_5g31410
malus_domestica	MD15G1404800.v1.1
prunus_persica	Prupe.1G556500_v2.0.a1
pyrus_communis	pycom08g18820 pycom15g36220
rosa_chinensis	RchiOBHm_Chr7g0223691 RchiOBHm_Chr7g0226681
rosa_laevigata	RLG00000001707
rosa_multiflora	Rmu_sc0000816.1_g000029 Rmu_sc0001903.1_g000021
rosa_roxburghii	Rroxscaffold_3G00232510 Rroxscaffold_3G00237430
rosa_rugosa	Rorug07G0218800 Rorug07G0239200
rosa_samantha	Rh7AG361600 Rh7AG387200 Rh7BG353100 Rh7BG373400 Rh7CG380200 Rh7CG406400 Rh7DG357000 Rh7DG385500
rosa_wichuraiana	Rw7G030740 Rw7G032470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	655
AciI	CCGC	4 cut(s)	69, 183, 516, 659
AcsI	RAATTY	3 cut(s)	15, 173, 532
AcuI	CTGAAG	2 cut(s)	433, 577
AcyI	GRCGYC	1 cut(s)	668
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	5 cut(s)	121, 126, 489, 677, 816
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	375, 607
AluBI	AGCT	3 cut(s)	399, 782, 788
AluI	AGCT	3 cut(s)	399, 782, 788
Alw26I	GTCTC	3 cut(s)	162, 467, 618
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	6 cut(s)	70, 378, 410, 611, 684, 743
ApeKI	GCWGC	2 cut(s)	504, 710
ApoI	RAATTY	3 cut(s)	15, 173, 532
AspS9I	GGNCC	2 cut(s)	611, 646
AsuHPI	GGTGA	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	646
BanI	GGYRCC	1 cut(s)	655
BbsI	GAAGAC	1 cut(s)	583
BbvI	GCAGC	2 cut(s)	516, 722
BccI	CCATC	2 cut(s)	74, 437
BceAI	ACGGC	1 cut(s)	671
BciT130I	CCWGG	2 cut(s)	377, 609
BcoDI	GTCTC	3 cut(s)	162, 467, 618
BfaI	CTAG	2 cut(s)	74, 728
BfmI	CTRYAG	1 cut(s)	262
BglI	GCCNNNNNGGC	1 cut(s)	732
BisI	GCNGC	4 cut(s)	70, 505, 659, 711
BlsI	GCNGC	4 cut(s)	71, 506, 660, 712
Bme1390I	CCNGG	2 cut(s)	377, 609
Bme18I	GGWCC	1 cut(s)	646
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	611, 646
BmiI	GGNNCC	2 cut(s)	648, 657
BmrFI	CCNGG	2 cut(s)	377, 609
BmsI	GCATC	2 cut(s)	165, 809
BpiI	GAAGAC	1 cut(s)	583
BpuEI	CTTGAG	2 cut(s)	20, 427
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	4 cut(s)	375, 381, 608, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	377, 609
BseDI	CCNNGG	4 cut(s)	375, 381, 608, 687
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	516, 722
BseYI	CCCAGC	1 cut(s)	549
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	6 cut(s)	72, 380, 412, 613, 686, 745
BshNI	GGYRCC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	3 cut(s)	162, 467, 618
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	6 cut(s)	72, 380, 412, 613, 686, 745
BsoBI	CYCGRG	1 cut(s)	148
BspACI	CCGC	4 cut(s)	69, 183, 516, 659
BspANI	GGCC	6 cut(s)	72, 380, 412, 613, 686, 745
BspCNI	CTCAG	1 cut(s)	748
BspLI	GGNNCC	2 cut(s)	648, 657
BspT107I	GGYRCC	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	4 cut(s)	375, 381, 608, 687
BssNI	GRCGYC	1 cut(s)	668
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	377, 609
Bst4CI	ACNGT	3 cut(s)	266, 424, 719
Bst6I	CTCTTC	1 cut(s)	616
BstACI	GRCGYC	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	104, 766
BstDEI	CTNAG	4 cut(s)	9, 706, 756, 834
BstDSI	CCRYGG	1 cut(s)	687
BstMAI	GTCTC	3 cut(s)	162, 467, 618
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 513, 667, 732
BstNI	CCWGG	2 cut(s)	377, 609
BstSCI	CCNGG	2 cut(s)	375, 607
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	516, 722
BstV2I	GAAGAC	1 cut(s)	583
BsuRI	GGCC	6 cut(s)	72, 380, 412, 613, 686, 745
BtgI	CCRYGG	1 cut(s)	687
BtgZI	GCGATG	2 cut(s)	142, 786
BtrI	CACGTC	1 cut(s)	64
BtsI	GCAGTG	2 cut(s)	113, 168
BtsIMutI	CAGTG	4 cut(s)	113, 168, 213, 601
Cac8I	GCNNGC	2 cut(s)	104, 766
Cfr13I	GGNCC	2 cut(s)	611, 646
CseI	GACGC	1 cut(s)	676
CviAII	CATG	5 cut(s)	113, 269, 306, 615, 751
DdeI	CTNAG	4 cut(s)	9, 706, 756, 834
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	616
Eco130I	CCWWGG	1 cut(s)	381
Eco147I	AGGCCT	2 cut(s)	412, 745
Eco47I	GGWCC	1 cut(s)	646
Eco57I	CTGAAG	2 cut(s)	433, 577
Eco88I	CYCGRG	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	375, 607
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	5 cut(s)	116, 272, 309, 618, 754
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	5 cut(s)	112, 268, 305, 614, 750
FauI	CCCGC	1 cut(s)	509
Fnu4HI	GCNGC	4 cut(s)	70, 505, 659, 711
Fsp4HI	GCNGC	4 cut(s)	70, 505, 659, 711
FspBI	CTAG	2 cut(s)	74, 728
GluI	GCNGC	4 cut(s)	70, 505, 659, 711
GsaI	CCCAGC	1 cut(s)	553
HaeIII	GGCC	6 cut(s)	72, 380, 412, 613, 686, 745
HgaI	GACGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	5 cut(s)	116, 272, 309, 618, 754
HinfI	GANTC	1 cut(s)	824
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	6, 369
Hpy188I	TCNGA	2 cut(s)	193, 200
Hpy188III	TCNNGA	2 cut(s)	148, 816
Hpy8I	GTNNAC	2 cut(s)	6, 369
Hpy99I	CGWCG	1 cut(s)	670
HpyAV	CCTTC	4 cut(s)	337, 490, 646, 756
HpyCH4III	ACNGT	3 cut(s)	266, 424, 719
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	5 cut(s)	213, 278, 299, 325, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 513, 667, 732
HpyF3I	CTNAG	4 cut(s)	9, 706, 756, 834
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	5 cut(s)	116, 272, 309, 618, 754
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	9 cut(s)	36, 88, 201, 264, 362, 389, 535, 594, 621
Lsp1109I	GCAGC	2 cut(s)	516, 722
LweI	GCATC	2 cut(s)	165, 809
MaeI	CTAG	2 cut(s)	74, 728
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	5 cut(s)	134, 205, 257, 347, 701
MboII	GAAGA	4 cut(s)	452, 541, 583, 633
MluCI	AATT	6 cut(s)	15, 121, 173, 286, 532, 580
MlyI	GAGTC	1 cut(s)	833
MnlI	CCTC	7 cut(s)	104, 144, 196, 402, 468, 676, 724
MseI	TTAA	1 cut(s)	467
MslI	CAYNNNNRTG	2 cut(s)	161, 273
MspR9I	CCNGG	2 cut(s)	377, 609
MvaI	CCWGG	2 cut(s)	377, 609
MwoI	GCNNNNNNNGC	4 cut(s)	99, 513, 667, 732
NlaIII	CATG	5 cut(s)	116, 272, 309, 618, 754
NlaIV	GGNNCC	2 cut(s)	648, 657
NmuCI	GTSAC	2 cut(s)	134, 347
PaeR7I	CTCGAG	1 cut(s)	148
PceI	AGGCCT	2 cut(s)	412, 745
PkrI	GCNGC	4 cut(s)	71, 506, 660, 712
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
Psp6I	CCWGG	2 cut(s)	375, 607
PspFI	CCCAGC	1 cut(s)	549
PspGI	CCWGG	2 cut(s)	375, 607
PspN4I	GGNNCC	2 cut(s)	648, 657
PspPI	GGNCC	2 cut(s)	611, 646
RseI	CAYNNNNRTG	2 cut(s)	161, 273
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	4 cut(s)	70, 505, 659, 711
Sau96I	GGNCC	2 cut(s)	611, 646
SchI	GAGTC	1 cut(s)	833
ScrFI	CCNGG	2 cut(s)	377, 609
SetI	ASST	6 cut(s)	66, 207, 401, 657, 784, 790
SfaNI	GCATC	2 cut(s)	165, 809
SfcI	CTRYAG	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	646
SlaI	CTCGAG	1 cut(s)	148
SmiMI	CAYNNNNRTG	2 cut(s)	161, 273
SmlI	CTYRAG	3 cut(s)	35, 148, 406
SmoI	CTYRAG	3 cut(s)	35, 148, 406
Sse9I	AATT	6 cut(s)	15, 121, 173, 286, 532, 580
SseBI	AGGCCT	2 cut(s)	412, 745
SsiI	CCGC	4 cut(s)	69, 183, 516, 659
SspMI	CTAG	2 cut(s)	74, 728
StuI	AGGCCT	2 cut(s)	412, 745
StyD4I	CCNGG	2 cut(s)	375, 607
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	266, 424, 719
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	149, 492, 527
TasI	AATT	6 cut(s)	15, 121, 173, 286, 532, 580
TauI	GCSGC	2 cut(s)	72, 661
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TscAI	CASTG	4 cut(s)	113, 168, 220, 601
TseFI	GTSAC	2 cut(s)	134, 347
TseI	GCWGC	2 cut(s)	504, 710
Tsp45I	GTSAC	2 cut(s)	134, 347
TspDTI	ATGAA	1 cut(s)	356
TspRI	CASTG	4 cut(s)	113, 168, 220, 601
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	3 cut(s)	15, 173, 532
XhoI	CTCGAG	1 cut(s)	148
XspI	CTAG	2 cut(s)	74, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.