Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007282

Physical Location & Seq

Genomic Coordinates Reverse (-)

52637455 .. 52639351

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG385500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGCTGGCAGTGGCATGGGTTCAATTCAAATACAAGTCACAGCGACTTCTCGAGGAGCATCGCAGTGGGAGACAAATTTGTCTGCGGAGTTTCAGAAATCGGAGAGGGTCTAATTATGCTTGTGCAATCTCATGGAGTAATGGTAGTTTGGATTGTTGGGGAGAAATGAAGGGTGACAAACCACAAGGGAAGTTTACTTCCCTGGCCTTGGGCGACAACCGAAGCTGTGGCCTGAGGCCTAATGGAACAGTCGTTTGTTGGGGGGAAGATGGCTTCAGTTTGCCTCAAAGTTTAAGAGAGACTTCCTTCACCTCAATAGAAGCAAAAAGCAGCGTTTTCTGTGGGGTCTTGTCGAAGAATTTTTCCTTGTATTGCTGGGGAAACCAAGTGTTTGATACCCAAGACAATTTCTTGGTTTTCAGTCATGTGAAGCCAGGGCCATGTAGAAGAGAGTGCCCATTGTATAGCTCCCTATTACCAGGCTATGGCAACTTTTGTGAACAAGGATATGTAGTTTGTCAACCTTGTGAGGGGACAACTATAGTAGTTCAATCAGTGCCGGGGCCAACACCGCAACCACCGAGGGAGTCTAAGTGGAGCAAGAAAATGGTTGCTTTTCTTGTAGTGGGTTGTGTTGGGTCCTCAGCTTTCTTGTTGGTTTGTGGCTACTTCGTGTTCAAGAATTGCAAAATTAGAGGTTCCAGAATCCATGACTCGGGTCGATTGGATGATATCGAGAGCCAAGCTAATCAGCCTGGTTCAGGGCAACTCCAAAGCCAACCAGCTCAACAACCACCAGTGTTGGAGAAGCGGCTAAGCCACTTGATTAGCCTGGGAGCCAATGGAGGTTCATTGGAGGAATTTTCGTTGCCAGTGCTACTAAAGGCCACCAACAACTTCTCAGAAGAACACAAGATTGGGACAGGCAACTATGGCTCAGTCTACTATGCCACATTAGATGATGGCCACCGTGAAGTGGCCATCAAGCGTGCCGAATCATCAGCGTCCTCATCATCTGTTGGCGGGCACACTAGGCGCCAAGAGGACAATGACAGTGCATTTGTGAATGAGCTTGAGATTTTGGACCCGAAGGTGCCGCCACCGACGCCATTTGAAATAGAGGCCGTGGCGTATGTGGGTTACTCAGCAGCGGACTGTGTGAGCCGAGAGGGTAGAGATAGGCCTTCCATGACTGAGATTGCAAGCAACTTGGAAAGAGCTTTAGCTTATTGTTTGGCATCGCCACCAAGTTCAAGAACCGAGTCTTTGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046983 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr RCC1_2

Protein Analysis

424

Amino Acids

46.46

Weight (kDa)

7.44

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47850
fragaria_vesca	FvH4_5g31410
malus_domestica	MD15G1404800.v1.1
prunus_persica	Prupe.1G556500_v2.0.a1
pyrus_communis	pycom08g18820 pycom15g36220
rosa_chinensis	RchiOBHm_Chr7g0223691 RchiOBHm_Chr7g0226681
rosa_laevigata	RLG00000001707
rosa_multiflora	Rmu_sc0000816.1_g000029 Rmu_sc0001903.1_g000021
rosa_roxburghii	Rroxscaffold_3G00232510 Rroxscaffold_3G00237430
rosa_rugosa	Rorug07G0218800 Rorug07G0239200
rosa_samantha	Rh7AG361600 Rh7AG387200 Rh7BG353100 Rh7BG373400 Rh7CG380200 Rh7CG406400 Rh7DG357000 Rh7DG385500
rosa_wichuraiana	Rw7G030740 Rw7G032470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	78
AccB1I	GGYRCC	2 cut(s)	1035, 1093
AccB7I	CCANNNNNTGG	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	942
AciI	CCGC	6 cut(s)	85, 572, 811, 1023, 1097, 1151
AcoI	YGGCCR	2 cut(s)	964, 978
AcsI	RAATTY	3 cut(s)	75, 358, 860
AcuI	CTGAAG	1 cut(s)	259
AcyI	GRCGYC	2 cut(s)	1036, 1106
AfiI	CCNNNNNNNGG	6 cut(s)	208, 485, 530, 715, 761, 976
AgsI	TTSAA	6 cut(s)	23, 28, 551, 679, 1115, 1254
AjnI	CCWGG	5 cut(s)	201, 433, 478, 754, 831
AjuI	GAANNNNNNNTTGG	2 cut(s)	900, 932
AluBI	AGCT	8 cut(s)	225, 468, 647, 746, 785, 1072, 1220, 1226
AluI	AGCT	8 cut(s)	225, 468, 647, 746, 785, 1072, 1220, 1226
Alw26I	GTCTC	2 cut(s)	64, 293
Ama87I	CYCGRG	2 cut(s)	50, 715
ApeKI	GCWGC	2 cut(s)	330, 1148
ApoI	RAATTY	3 cut(s)	75, 358, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
AspLEI	GCGC	1 cut(s)	1038
AspS9I	GGNCC	4 cut(s)	437, 563, 639, 1084
AsuC2I	CCSGG	1 cut(s)	561
AsuHPI	GGTGA	2 cut(s)	185, 301
AvaI	CYCGRG	2 cut(s)	50, 715
AvaII	GGWCC	2 cut(s)	639, 1084
AxyI	CCTNAGG	1 cut(s)	233
BaeGI	GKGCMC	2 cut(s)	458, 1029
BalI	TGGCCA	2 cut(s)	966, 980
BanI	GGYRCC	2 cut(s)	1035, 1093
BbvCI	CCTCAGC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	342, 1160
BccI	CCATC	3 cut(s)	263, 956, 989
BceAI	ACGGC	1 cut(s)	1109
BciT130I	CCWGG	5 cut(s)	203, 435, 480, 756, 833
BcnI	CCSGG	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	64, 293
BfaI	CTAG	1 cut(s)	1032
BfmI	CTRYAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	1039
BisI	GCNGC	4 cut(s)	331, 812, 1097, 1149
BlpI	GCTNAGC	1 cut(s)	815
BlsI	GCNGC	4 cut(s)	332, 813, 1098, 1150
Bme1390I	CCNGG	6 cut(s)	203, 435, 480, 561, 756, 833
Bme18I	GGWCC	2 cut(s)	639, 1084
BmeT110I	CYCGRG	2 cut(s)	50, 715
BmgT120I	GGNCC	4 cut(s)	437, 563, 639, 1084
BmiI	GGNNCC	7 cut(s)	564, 640, 700, 838, 1037, 1086, 1095
BmrFI	CCNGG	6 cut(s)	203, 435, 480, 561, 756, 833
BmsI	GCATC	2 cut(s)	67, 1247
BoxI	GACNNNNGTC	1 cut(s)	717
Bpu10I	CCTNAGC	1 cut(s)	643
Bpu1102I	GCTNAGC	1 cut(s)	815
BpuEI	CTTGAG	1 cut(s)	1094
BpuMI	CCSGG	1 cut(s)	561
BsaHI	GRCGYC	2 cut(s)	1036, 1106
BsaJI	CCNNGG	7 cut(s)	201, 207, 434, 560, 581, 832, 1125
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 578, 608
Bsc4I	CCNNNNNNNGG	6 cut(s)	208, 485, 530, 715, 761, 976
Bse1I	ACTGG	2 cut(s)	797, 872
Bse21I	CCTNAGG	1 cut(s)	233
BseBI	CCWGG	5 cut(s)	203, 435, 480, 756, 833
BseDI	CCNNGG	7 cut(s)	201, 207, 434, 560, 581, 832, 1125
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	6 cut(s)	208, 485, 530, 715, 761, 976
BseMII	CTCAG	6 cut(s)	224, 657, 915, 951, 1158, 1185
BseNI	ACTGG	2 cut(s)	797, 872
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	2 cut(s)	458, 1029
BseXI	GCAGC	2 cut(s)	342, 1160
BseYI	CCCAGC	1 cut(s)	375
BshNI	GGYRCC	2 cut(s)	1035, 1093
BsiHKCI	CYCGRG	2 cut(s)	50, 715
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	2 cut(s)	547, 934
BslI	CCNNNNNNNGG	6 cut(s)	208, 485, 530, 715, 761, 976
BsmAI	GTCTC	2 cut(s)	64, 293
BsmFI	GGGAC	2 cut(s)	547, 934
BsoBI	CYCGRG	2 cut(s)	50, 715
Bsp1286I	GDGCHC	2 cut(s)	458, 1029
Bsp1720I	GCTNAGC	1 cut(s)	815
BspACI	CCGC	6 cut(s)	85, 572, 811, 1023, 1097, 1151
BspCNI	CTCAG	6 cut(s)	225, 656, 914, 950, 1157, 1186
BspLI	GGNNCC	7 cut(s)	564, 640, 700, 838, 1037, 1086, 1095
BspT107I	GGYRCC	2 cut(s)	1035, 1093
BsrI	ACTGG	2 cut(s)	797, 872
BssECI	CCNNGG	7 cut(s)	201, 207, 434, 560, 581, 832, 1125
BssNI	GRCGYC	2 cut(s)	1036, 1106
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	5 cut(s)	203, 435, 480, 756, 833
Bst4CI	ACNGT	4 cut(s)	250, 971, 1055, 1157
Bst6I	CTCTTC	1 cut(s)	442
BstACI	GRCGYC	2 cut(s)	1036, 1106
BstC8I	GCNNGC	4 cut(s)	6, 990, 1025, 1204
BstDEI	CTNAG	9 cut(s)	233, 591, 643, 815, 901, 937, 1144, 1194, 1272
BstDSI	CCRYGG	1 cut(s)	1125
BstENI	CCTNNNNNAGG	1 cut(s)	759
BstF5I	GGATG	1 cut(s)	733
BstH2I	RGCGCY	1 cut(s)	1039
BstHHI	GCGC	1 cut(s)	1038
BstMAI	GTCTC	2 cut(s)	64, 293
BstMWI	GCNNNNNNNGC	4 cut(s)	571, 933, 1033, 1105
BstNI	CCWGG	5 cut(s)	203, 435, 480, 756, 833
BstPAI	GACNNNNGTC	1 cut(s)	717
BstSCI	CCNGG	6 cut(s)	201, 433, 478, 559, 754, 831
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	2 cut(s)	458, 1029
BstV1I	GCAGC	2 cut(s)	342, 1160
Bsu36I	CCTNAGG	1 cut(s)	233
BtgI	CCRYGG	1 cut(s)	1125
BtgZI	GCGATG	2 cut(s)	44, 1224
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	2 cut(s)	15, 70
BtsIMutI	CAGTG	6 cut(s)	15, 70, 561, 804, 879, 1060
Cac8I	GCNNGC	4 cut(s)	6, 990, 1025, 1204
CfoI	GCGC	1 cut(s)	1038
Cfr13I	GGNCC	4 cut(s)	437, 563, 639, 1084
CseI	GACGC	2 cut(s)	993, 1114
CspCI	CAANNNNNGTGG	2 cut(s)	783, 818
CviAII	CATG	6 cut(s)	15, 132, 425, 441, 710, 1189
DdeI	CTNAG	9 cut(s)	233, 591, 643, 815, 901, 937, 1144, 1194, 1272
DinI	GGCGCC	1 cut(s)	1037
DrdI	GACNNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	78
EaeI	YGGCCR	2 cut(s)	964, 978
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	207
Eco147I	AGGCCT	2 cut(s)	238, 1183
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	2 cut(s)	639, 1084
Eco57I	CTGAAG	1 cut(s)	259
Eco81I	CCTNAGG	1 cut(s)	233
Eco88I	CYCGRG	2 cut(s)	50, 715
EcoNI	CCTNNNNNAGG	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	639
EcoRII	CCWGG	5 cut(s)	201, 433, 478, 754, 831
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	207
EgeI	GGCGCC	1 cut(s)	1037
EheI	GGCGCC	1 cut(s)	1037
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	6 cut(s)	18, 135, 428, 444, 713, 1192
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	2 cut(s)	547, 934
FatI	CATG	6 cut(s)	14, 131, 424, 440, 709, 1188
FauI	CCCGC	1 cut(s)	1016
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	4 cut(s)	331, 812, 1097, 1149
FokI	GGATG	1 cut(s)	740
Fsp4HI	GCNGC	4 cut(s)	331, 812, 1097, 1149
FspBI	CTAG	1 cut(s)	1032
GlaI	GCGC	1 cut(s)	1037
GluI	GCNGC	4 cut(s)	331, 812, 1097, 1149
GsaI	CCCAGC	1 cut(s)	379
HaeII	RGCGCY	1 cut(s)	1039
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	2 cut(s)	993, 1114
HhaI	GCGC	1 cut(s)	1038
Hin1I	GRCGYC	2 cut(s)	1036, 1106
Hin1II	CATG	6 cut(s)	18, 135, 428, 444, 713, 1192
Hin6I	GCGC	1 cut(s)	1036
HinP1I	GCGC	1 cut(s)	1036
HincII	GTYRAC	1 cut(s)	521
HindII	GTYRAC	1 cut(s)	521
HinfI	GANTC	5 cut(s)	587, 705, 713, 995, 1262
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	2 cut(s)	185, 301
Hpy166II	GTNNAC	4 cut(s)	195, 500, 521, 943
Hpy188I	TCNGA	3 cut(s)	95, 102, 904
Hpy188III	TCNNGA	5 cut(s)	50, 679, 702, 736, 1254
Hpy8I	GTNNAC	4 cut(s)	195, 500, 521, 943
Hpy99I	CGWCG	1 cut(s)	1108
HpyAV	CCTTC	4 cut(s)	163, 316, 1084, 1194
HpyCH4III	ACNGT	4 cut(s)	250, 971, 1055, 1157
HpyCH4V	TGCA	4 cut(s)	125, 687, 1058, 1202
HpyF10VI	GCNNNNNNNGC	4 cut(s)	571, 933, 1033, 1105
HpyF3I	CTNAG	9 cut(s)	233, 591, 643, 815, 901, 937, 1144, 1194, 1272
Hsp92I	GRCGYC	2 cut(s)	1036, 1106
Hsp92II	CATG	6 cut(s)	18, 135, 428, 444, 713, 1192
HspAI	GCGC	1 cut(s)	1036
KasI	GGCGCC	1 cut(s)	1035
LmnI	GCTCC	4 cut(s)	55, 473, 597, 836
Lsp1109I	GCAGC	2 cut(s)	342, 1160
LweI	GCATC	2 cut(s)	67, 1247
MaeI	CTAG	1 cut(s)	1032
MaeIII	GTNAC	3 cut(s)	36, 173, 1139
MboII	GAAGA	4 cut(s)	278, 367, 459, 917
MhlI	GDGCHC	2 cut(s)	458, 1029
MlsI	TGGCCA	2 cut(s)	966, 980
MluCI	AATT	8 cut(s)	23, 75, 112, 358, 406, 682, 690, 860
MluNI	TGGCCA	2 cut(s)	966, 980
Mly113I	GGCGCC	1 cut(s)	1036
MlyI	GAGTC	3 cut(s)	596, 707, 1271
MmeI	TCCRAC	1 cut(s)	783
Mox20I	TGGCCA	2 cut(s)	966, 980
MscI	TGGCCA	2 cut(s)	966, 980
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	2 cut(s)	966, 980
MspA1I	CMGCKG	1 cut(s)	1151
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	6 cut(s)	203, 435, 480, 561, 756, 833
MvaI	CCWGG	5 cut(s)	203, 435, 480, 756, 833
MwoI	GCNNNNNNNGC	4 cut(s)	571, 933, 1033, 1105
NarI	GGCGCC	1 cut(s)	1036
NciI	CCSGG	1 cut(s)	561
NlaIII	CATG	6 cut(s)	18, 135, 428, 444, 713, 1192
NlaIV	GGNNCC	7 cut(s)	564, 640, 700, 838, 1037, 1086, 1095
NmeAIII	GCCGAG	1 cut(s)	1190
NmuCI	GTSAC	2 cut(s)	36, 173
PaeR7I	CTCGAG	1 cut(s)	50
PceI	AGGCCT	2 cut(s)	238, 1183
PfeI	GAWTC	2 cut(s)	705, 995
PflMI	CCANNNNNTGG	1 cut(s)	485
PkrI	GCNGC	4 cut(s)	332, 813, 1098, 1150
PleI	GAGTC	3 cut(s)	595, 707, 1270
PluTI	GGCGCC	1 cut(s)	1039
PpsI	GAGTC	3 cut(s)	595, 707, 1270
PpuMI	RGGWCCY	1 cut(s)	639
PshAI	GACNNNNGTC	1 cut(s)	717
Psp5II	RGGWCCY	1 cut(s)	639
Psp6I	CCWGG	5 cut(s)	201, 433, 478, 754, 831
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	5 cut(s)	201, 433, 478, 754, 831
PspN4I	GGNNCC	7 cut(s)	564, 640, 700, 838, 1037, 1086, 1095
PspPI	GGNCC	4 cut(s)	437, 563, 639, 1084
PspPPI	RGGWCCY	1 cut(s)	639
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	4 cut(s)	331, 812, 1097, 1149
Sau96I	GGNCC	4 cut(s)	437, 563, 639, 1084
SchI	GAGTC	3 cut(s)	596, 707, 1271
ScrFI	CCNGG	6 cut(s)	203, 435, 480, 561, 756, 833
SduI	GDGCHC	2 cut(s)	458, 1029
SfaNI	GCATC	2 cut(s)	67, 1247
SfcI	CTRYAG	1 cut(s)	540
SfoI	GGCGCC	1 cut(s)	1037
Sfr274I	CTCGAG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	639, 1084
SlaI	CTCGAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	50, 1073
SmoI	CTYRAG	2 cut(s)	50, 1073
Sse9I	AATT	8 cut(s)	23, 75, 112, 358, 406, 682, 690, 860
SseBI	AGGCCT	2 cut(s)	238, 1183
SsiI	CCGC	6 cut(s)	85, 572, 811, 1023, 1097, 1151
SspDI	GGCGCC	1 cut(s)	1035
SspMI	CTAG	1 cut(s)	1032
StuI	AGGCCT	2 cut(s)	238, 1183
StyD4I	CCNGG	6 cut(s)	201, 433, 478, 559, 754, 831
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	4 cut(s)	250, 971, 1055, 1157
TaqI	TCGA	4 cut(s)	51, 353, 721, 735
TasI	AATT	8 cut(s)	23, 75, 112, 358, 406, 682, 690, 860
TauI	GCSGC	2 cut(s)	814, 1099
TfiI	GAWTC	2 cut(s)	705, 995
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	6 cut(s)	15, 70, 561, 804, 879, 1060
TseFI	GTSAC	2 cut(s)	36, 173
TseI	GCWGC	2 cut(s)	330, 1148
Tsp45I	GTSAC	2 cut(s)	36, 173
TspDTI	ATGAA	2 cut(s)	182, 840
TspRI	CASTG	6 cut(s)	15, 70, 561, 804, 879, 1060
Van91I	CCANNNNNTGG	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	639, 1084
XagI	CCTNNNNNAGG	1 cut(s)	759
XapI	RAATTY	3 cut(s)	75, 358, 860
XhoI	CTCGAG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	942
XspI	CTAG	1 cut(s)	1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.