Rh7CG157500

ubiquitin-conjugating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014896
Physical Location & Seq
Reverse (-)
12914142 .. 12916997
2856 bp
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UTR
Exon/CDS
Intron
Rh7CG157500.1

Sequence Viewer

Length: 360 bp
ATGTTTCACTGGCAGGCGACAATCATGGGTCCTGCAGACAGTCCCTACGCAGGTGGAGTGTTTCTTGTCACCATACACTTTCCTCCAGACTATCCTTTTAAGCCACCAAAGGTTGCATTCAGGACAAAGGTGTTTCACCCAAACATTAATAGCAATGGCAGCATTTGCCTTGACATTTTGAAGGAACAGTGGAGTCCTGCGCTGACCATATCGAAGGTATTGCTTTCGATTTGCTCCCTGTTGACAGACCCAAATCCTGATGATCCTTTGGTGCCAGAGATTGCCCATATGTACAAGACCGACAAGAACAAGTATGAGACCACTGCAAGGAGCTGGACCCAGAAGTACGCCATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624
Pfam Domains
Protein Families
UQ_con

Protein Analysis

119

Amino Acids

13.41

Weight (kDa)

7.79

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 1 - 112 3.2e-48 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 271
AclWI GGATC 1 cut(s) 257
AfaI GTAC 2 cut(s) 293, 347
AfiI CCNNNNNNNGG 2 cut(s) 50, 327
AgsI TTSAA 1 cut(s) 181
AluBI AGCT 1 cut(s) 333
AluI AGCT 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 159
AseI ATTAAT 1 cut(s) 147
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 29, 336
AsuHPI GGTGA 2 cut(s) 61, 128
AvaII GGWCC 2 cut(s) 29, 336
BanI GGYRCC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 171
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 1 cut(s) 358
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme18I GGWCC 2 cut(s) 29, 336
BmgT120I GGNCC 2 cut(s) 29, 336
BmiI GGNNCC 3 cut(s) 30, 273, 338
BpmI CTGGAG 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 351
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 327
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 351
BseLI CCNNNNNNNGG 2 cut(s) 50, 327
BseMI GCAATG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 171
BshNI GGYRCC 1 cut(s) 271
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 50, 327
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 311
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 1 cut(s) 262
Bsp19I CCATGG 1 cut(s) 351
BspLI GGNNCC 3 cut(s) 30, 273, 338
BspMAI CTGCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 41
BspPI GGATC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 271
BspTNI GGTCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 291
BsrI ACTGG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 41, 189
BstAPI GCANNNNNTGC 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 159, 165
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 171
BtgI CCRYGG 1 cut(s) 351
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 3 cut(s) 7, 194, 321
BveI ACCTGC 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 29, 336
Csp6I GTAC 2 cut(s) 292, 346
CviAII CATG 2 cut(s) 25, 352
CviJI RGCY 3 cut(s) 103, 333, 357
CviKI_1 RGCY 3 cut(s) 103, 333, 357
CviQI GTAC 2 cut(s) 292, 346
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 29, 336
EcoO109I RGGNCCY 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 28, 355
FaiI YATR 7 cut(s) 26, 74, 209, 288, 290, 315, 353
FaqI GGGAC 1 cut(s) 27
FatI CATG 2 cut(s) 24, 351
FauNDI CATATG 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 358
GlaI GCGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 69
HhaI GCGC 1 cut(s) 202
Hin1II CATG 2 cut(s) 28, 355
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 1 cut(s) 193
HphI GGTGA 2 cut(s) 61, 128
Hpy166II GTNNAC 1 cut(s) 243
Hpy188III TCNNGA 3 cut(s) 86, 121, 257
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 2 cut(s) 175, 208
HpyCH4III ACNGT 2 cut(s) 41, 189
HpyCH4V TGCA 3 cut(s) 35, 116, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 165
Hsp92II CATG 2 cut(s) 28, 355
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 239, 330
Lsp1109I GCAGC 1 cut(s) 171
MaeI CTAG 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 1 cut(s) 93
MseI TTAA 2 cut(s) 99, 147
Mva1269I GAATGC 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 159, 165
NcoI CCATGG 1 cut(s) 351
NdeI CATATG 1 cut(s) 288
NdeII GATC 1 cut(s) 262
NlaIII CATG 2 cut(s) 28, 355
NlaIV GGNNCC 3 cut(s) 30, 273, 338
NmuCI GTSAC 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 41
PctI GAATGC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PpuMI RGGWCCY 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 29
PspN4I GGNNCC 3 cut(s) 30, 273, 338
PspPI GGNCC 2 cut(s) 29, 336
PspPPI RGGWCCY 1 cut(s) 29
PstI CTGCAG 1 cut(s) 37
RsaI GTAC 2 cut(s) 293, 347
RsaNI GTAC 2 cut(s) 292, 346
SaqAI TTAA 2 cut(s) 99, 147
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 2 cut(s) 29, 336
SchI GAGTC 1 cut(s) 202
SetI ASST 5 cut(s) 55, 114, 132, 219, 335
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 2 cut(s) 29, 336
SspMI CTAG 1 cut(s) 358
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 41, 189
TaqI TCGA 2 cut(s) 212, 227
TaqII GACCGA 1 cut(s) 314
TatI WGTACW 1 cut(s) 291
Tru1I TTAA 2 cut(s) 99, 147
Tru9I TTAA 2 cut(s) 99, 147
TscAI CASTG 3 cut(s) 14, 194, 328
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 67
TspRI CASTG 3 cut(s) 14, 194, 328
VpaK11BI GGWCC 2 cut(s) 29, 336
VspI ATTAAT 1 cut(s) 147
XspI CTAG 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.