Rh7CG472300

Mechanosensitive ion channel protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
63391494 .. 63398249
6756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG472300.1

Sequence Viewer

Length: 1494 bp
ATGGATAATCCAGACTCGAAAATGAAAGAATTGGAACTGAGCGTCCATTTCACGGAAAGCTTCAATCTTCAGAAAAATTATCATCGTCTTCTCTCCTTTGGAGGTGTTGGACTGATTTGGGAGTTCGTGCCGGGTTCGAAAGCATTGTGCAGAGCTGTGATTCAGTTTGAGAATCAAGAAATGCCTCAAGCTGGTTCTATGAGGTTGTTGTATGAATGGAGAAGTCACAGTATTCATGGATGCCATAAACAGCCACATGCTATATTCACAAACTTCCTTTCCAGTGTAATGATCCATGCCACACGGCCATTTGTTGTCAATGAATGGATTCAGACTAAGATTCAAGGCTATGAAGTTTCTGGTACCGTCGAGCATGTGGGGTGGTGGTCACCAACAATTATAAGAGGCGATGATCGTGAAGCAGTTCACATTCCAAATCACAAGTTCACTGTGAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGAACCACATAGCCATTAGTCATTTGGATGTCAATAAAATTAATATTATTGTAGCTGATATGCGCAAGGTTTTAGCCAAAAATCCTCAAGTAGAGCAGCAAAGGTTGCATAGAAGAGTTTTTCTGGATAATATTAATCCAGAGAATCAGGCTCTTATGATTTTGGTATCTTGCTTTGTGAAAACATCTCACATTGAGGAGTATCTCTGCGTGAAGGAGGCAATACTCTTGGATCTTCTCAGAGTTGTCAGCCATCATCGTGCTAGGCTTGCCACACCCCTCCGCACAGTTCAGAAAGTATACGGTGATGCTGACATGGAAAATGTGCCATTTGCTGACACCATTTTTGGTAGTTCTACGGCACGTACTAATCGTCCATATCTCCTCATTGAGCCATCTTACAGAATCAGTAGTGATGACAAAAGTAAGGCTTCTAATCGCTCAGCACGTACAAATGGAGACAAGGAAGAACCTAAAGCTGGGCCAACACTAACACCTGCGCAAACTGAAGATAAGGCAACTTCAACTTCCAACTCAAGTACAAGTCCCAAGACTTCGGAAATGCCAACATCTGAACCCCAAACACAGAATTTGGCATCTGATGGTTCAGCCCCAGACTCCTCTGAAATACTGCAGTCCAAGAATGAGATGATAAGATTTGCAGGGAAGGAGAAGGGAGTTGATTCCAAAAATGTATCTCCAGAAAAGGCAACATCTAAGAAGTCTCCTGTTACTTCATCTGAGATGGGTGGTCGAAAGACGGATATTCCTTTGACAACTTTACAGGCAAAACAAGATGGAGAGAAACCTGTTGCATCACCATCTACAGCTCGCGCTCCCTTAGAAGAGAATATCATTCTCGGTGTTGCCTTAGAGGGCTCAAAGCGGACACTTCCCATTGAGGAAGATATGGCTCCATCTCTTATAGAATCAAAAGAATTCACCGCCAGCCGTAATGGCAGCGGCGGGTCTCCTCCTGGCACAGATGTGAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

497

Amino Acids

55.26

Weight (kDa)

8.19

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MS_channel_2nd PF00924 88 - 158 4.7e-12 Mechanosensitive ion channel, beta-domain
Msl2-3_C PF24956 163 - 249 1.1e-44 Mechanosensitive ion channel protein 2/3 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AarI CACCTGC 1 cut(s) 1000
Acc16I TGCGCA 2 cut(s) 560, 996
Acc36I ACCTGC 1 cut(s) 1000
Acc65I GGTACC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 795
AccII CGCG 1 cut(s) 1329
AciI CCGC 5 cut(s) 778, 1381, 1440, 1458, 1461
AclWI GGATC 2 cut(s) 286, 735
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 2 cut(s) 1084, 1433
AcuI CTGAAG 2 cut(s) 53, 1023
AfaI GTAC 4 cut(s) 364, 862, 946, 1036
AfiI CCNNNNNNNGG 3 cut(s) 52, 191, 974
AgsI TTSAA 3 cut(s) 64, 344, 1020
AjnI CCWGG 1 cut(s) 1471
AleI CACNNNNGTG 1 cut(s) 1481
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
AluBI AGCT 6 cut(s) 60, 155, 191, 551, 974, 1325
AluI AGCT 6 cut(s) 60, 155, 191, 551, 974, 1325
Alw26I GTCTC 3 cut(s) 948, 1224, 1470
AlwI GGATC 2 cut(s) 286, 735
AoxI GGCC 2 cut(s) 305, 977
ApeKI GCWGC 2 cut(s) 592, 1455
ApoI RAATTY 2 cut(s) 1084, 1433
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
AseI ATTAAT 2 cut(s) 537, 630
Asp700I GAANNNNTTC 2 cut(s) 327, 423
Asp718I GGTACC 1 cut(s) 362
AspLEI GCGC 4 cut(s) 492, 561, 997, 1331
AspS9I GGNCC 1 cut(s) 977
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 4 cut(s) 381, 812, 1305, 1429
AsuII TTCGAA 1 cut(s) 137
BanI GGYRCC 1 cut(s) 362
BanII GRGCYC 1 cut(s) 1376
BbsI GAAGAC 2 cut(s) 80, 485
BbvI GCAGC 2 cut(s) 604, 1467
BccI CCATC 7 cut(s) 756, 898, 1091, 1234, 1286, 1324, 1420
BceAI ACGGC 3 cut(s) 320, 870, 1431
BciT130I CCWGG 1 cut(s) 1473
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 3 cut(s) 948, 1224, 1470
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 2 cut(s) 1127, 1320
BfuAI ACCTGC 1 cut(s) 1000
BglI GCCNNNNNGGC 1 cut(s) 1452
BisI GCNGC 3 cut(s) 593, 1456, 1459
BlpI GCTNAGC 1 cut(s) 937
BlsI GCNGC 3 cut(s) 594, 1457, 1460
Bme1390I CCNGG 2 cut(s) 132, 1473
BmgT120I GGNCC 1 cut(s) 977
BmiI GGNNCC 2 cut(s) 364, 1410
BmrFI CCNGG 2 cut(s) 132, 1473
BmsI GCATC 5 cut(s) 230, 501, 793, 1100, 1319
BpiI GAAGAC 2 cut(s) 80, 485
BpmI CTGGAG 1 cut(s) 1179
Bpu1102I GCTNAGC 1 cut(s) 937
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 3 cut(s) 171, 567, 1015
BpuMI CCSGG 1 cut(s) 132
BsaAI YACGTR 2 cut(s) 860, 944
BsaI GGTCTC 1 cut(s) 1470
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 191, 974
Bse1I ACTGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 1473
BseGI GGATG 2 cut(s) 245, 529
BseLI CCNNNNNNNGG 3 cut(s) 52, 191, 974
BseMII CTCAG 4 cut(s) 29, 748, 951, 1227
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 4 cut(s) 707, 869, 1105, 1458
BseXI GCAGC 2 cut(s) 604, 1467
BseYI CCCAGC 1 cut(s) 974
BsgI GTGCAG 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 1329
BshFI GGCC 2 cut(s) 307, 979
BshNI GGYRCC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 1026
BslI CCNNNNNNNGG 3 cut(s) 52, 191, 974
BsmAI GTCTC 3 cut(s) 948, 1224, 1470
BsmFI GGGAC 1 cut(s) 1026
BsnI GGCC 2 cut(s) 307, 979
Bso31I GGTCTC 1 cut(s) 1470
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 1376
Bsp143I GATC 3 cut(s) 291, 412, 727
Bsp1720I GCTNAGC 1 cut(s) 937
BspACI CCGC 5 cut(s) 778, 1381, 1440, 1458, 1461
BspANI GGCC 2 cut(s) 307, 979
BspCNI CTCAG 4 cut(s) 30, 747, 950, 1228
BspFNI CGCG 1 cut(s) 1329
BspLI GGNNCC 2 cut(s) 364, 1410
BspMAI CTGCAG 1 cut(s) 1131
BspMI ACCTGC 1 cut(s) 1000
BspPI GGATC 2 cut(s) 286, 735
BspT104I TTCGAA 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 1470
BsrI ACTGG 1 cut(s) 282
BssMI GATC 3 cut(s) 291, 412, 727
BssNAI GTATAC 1 cut(s) 796
Bst1107I GTATAC 1 cut(s) 796
Bst2UI CCWGG 1 cut(s) 1473
Bst4CI ACNGT 5 cut(s) 230, 367, 451, 784, 800
Bst6I CTCTTC 2 cut(s) 604, 1335
BstAPI GCANNNNNTGC 1 cut(s) 601
BstBAI YACGTR 2 cut(s) 860, 944
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 765, 1327, 1444
BstDEI CTNAG 9 cut(s) 38, 336, 470, 734, 937, 1212, 1236, 1336, 1366
BstEII GGTNACC 1 cut(s) 387
BstF5I GGATG 2 cut(s) 245, 529
BstFNI CGCG 1 cut(s) 1329
BstHHI GCGC 4 cut(s) 492, 561, 997, 1331
BstKTI GATC 3 cut(s) 294, 415, 730
BstMAI GTCTC 3 cut(s) 948, 1224, 1470
BstMBI GATC 3 cut(s) 291, 412, 727
BstMWI GCNNNNNNNGC 3 cut(s) 601, 764, 1452
BstNI CCWGG 1 cut(s) 1473
BstNSI RCATGY 2 cut(s) 260, 377
BstPI GGTNACC 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 130, 1471
BstSFI CTRYAG 2 cut(s) 1127, 1320
BstUI CGCG 1 cut(s) 1329
BstV1I GCAGC 2 cut(s) 604, 1467
BstV2I GAAGAC 2 cut(s) 80, 485
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
BstZ17I GTATAC 1 cut(s) 796
BsuRI GGCC 2 cut(s) 307, 979
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 245, 529
BtsIMutI CAGTG 2 cut(s) 289, 447
BveI ACCTGC 1 cut(s) 1000
Cac8I GCNNGC 3 cut(s) 765, 1327, 1444
CfoI GCGC 4 cut(s) 492, 561, 997, 1331
Cfr13I GGNCC 1 cut(s) 977
CseI GACGC 1 cut(s) 31
Csp6I GTAC 4 cut(s) 363, 861, 945, 1035
CviAII CATG 5 cut(s) 236, 257, 296, 374, 811
CviQI GTAC 4 cut(s) 363, 861, 945, 1035
DdeI CTNAG 9 cut(s) 38, 336, 470, 734, 937, 1212, 1236, 1336, 1366
DpnI GATC 3 cut(s) 293, 414, 729
DpnII GATC 3 cut(s) 291, 412, 727
EaeI YGGCCR 1 cut(s) 305
Eam1104I CTCTTC 2 cut(s) 604, 1335
EarI CTCTTC 2 cut(s) 604, 1335
Eco24I GRGCYC 1 cut(s) 1376
Eco31I GGTCTC 1 cut(s) 1470
Eco57I CTGAAG 2 cut(s) 53, 1023
Eco91I GGTNACC 1 cut(s) 387
EcoO65I GGTNACC 1 cut(s) 387
EcoRI GAATTC 1 cut(s) 1433
EcoRII CCWGG 1 cut(s) 1471
EcoT38I GRGCYC 1 cut(s) 1376
FaeI CATG 5 cut(s) 239, 260, 299, 377, 814
FalI AAGNNNNNCTT 2 cut(s) 910, 942
FaqI GGGAC 1 cut(s) 1026
FatI CATG 5 cut(s) 235, 256, 295, 373, 810
FauI CCCGC 1 cut(s) 1454
FblI GTMKAC 1 cut(s) 795
Fnu4HI GCNGC 3 cut(s) 593, 1456, 1459
FokI GGATG 2 cut(s) 252, 536
FriOI GRGCYC 1 cut(s) 1376
Fsp4HI GCNGC 3 cut(s) 593, 1456, 1459
FspBI CTAG 1 cut(s) 759
FspI TGCGCA 2 cut(s) 560, 996
GlaI GCGC 4 cut(s) 491, 560, 996, 1330
GluI GCNGC 3 cut(s) 593, 1456, 1459
GsaI CCCAGC 1 cut(s) 978
GsuI CTGGAG 1 cut(s) 1179
HaeIII GGCC 2 cut(s) 307, 979
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 31
HhaI GCGC 4 cut(s) 492, 561, 997, 1331
Hin1II CATG 5 cut(s) 239, 260, 299, 377, 814
Hin6I GCGC 4 cut(s) 490, 559, 995, 1329
HinP1I GCGC 4 cut(s) 490, 559, 995, 1329
HindIII AAGCTT 1 cut(s) 58
HpaII CCGG 1 cut(s) 131
HphI GGTGA 4 cut(s) 381, 812, 1305, 1429
Hpy166II GTNNAC 3 cut(s) 427, 447, 796
Hpy188I TCNGA 9 cut(s) 72, 333, 737, 789, 1054, 1069, 1096, 1120, 1237
Hpy188III TCNNGA 7 cut(s) 11, 176, 416, 496, 620, 635, 1196
Hpy8I GTNNAC 3 cut(s) 427, 447, 796
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 703, 1156, 1162
HpyCH4III ACNGT 5 cut(s) 230, 367, 451, 784, 800
HpyCH4IV ACGT 2 cut(s) 859, 943
HpyCH4V TGCA 5 cut(s) 150, 604, 1129, 1157, 1310
HpyF10VI GCNNNNNNNGC 3 cut(s) 601, 764, 1452
HpyF3I CTNAG 9 cut(s) 38, 336, 470, 734, 937, 1212, 1236, 1336, 1366
HpySE526I ACGT 2 cut(s) 859, 943
Hsp92II CATG 5 cut(s) 239, 260, 299, 377, 814
HspAI GCGC 4 cut(s) 490, 559, 995, 1329
KpnI GGTACC 1 cut(s) 366
Kzo9I GATC 3 cut(s) 291, 412, 727
LmnI GCTCC 2 cut(s) 1336, 1414
Lsp1109I GCAGC 2 cut(s) 604, 1467
LweI GCATC 5 cut(s) 230, 501, 793, 1100, 1319
MaeI CTAG 1 cut(s) 759
MaeII ACGT 2 cut(s) 859, 943
MaeIII GTNAC 3 cut(s) 224, 387, 1225
MalI GATC 3 cut(s) 293, 414, 729
MboI GATC 3 cut(s) 291, 412, 727
MboII GAAGA 9 cut(s) 59, 80, 490, 621, 722, 974, 1016, 1352, 1412
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 1 cut(s) 1376
MluCI AATT 6 cut(s) 29, 76, 396, 534, 1084, 1433
MlyI GAGTC 3 cut(s) 8, 475, 1106
MmeI TCCRAC 2 cut(s) 88, 1050
MroXI GAANNNNTTC 2 cut(s) 327, 423
MseI TTAA 2 cut(s) 537, 630
MslI CAYNNNNRTG 3 cut(s) 522, 753, 1481
MspA1I CMGCKG 1 cut(s) 1458
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 132, 1473
MvaI CCWGG 1 cut(s) 1473
MvnI CGCG 1 cut(s) 1329
MwoI GCNNNNNNNGC 3 cut(s) 601, 764, 1452
NciI CCSGG 1 cut(s) 132
NdeII GATC 3 cut(s) 291, 412, 727
NlaIII CATG 5 cut(s) 239, 260, 299, 377, 814
NlaIV GGNNCC 2 cut(s) 364, 1410
NmuCI GTSAC 2 cut(s) 224, 387
NsbI TGCGCA 2 cut(s) 560, 996
NspI RCATGY 2 cut(s) 260, 377
NspV TTCGAA 1 cut(s) 137
OliI CACNNNNGTG 1 cut(s) 1481
PaqCI CACCTGC 1 cut(s) 1000
PcsI WCGNNNNNNNCGW 2 cut(s) 865, 940
PdmI GAANNNNTTC 2 cut(s) 327, 423
PfeI GAWTC 9 cut(s) 160, 172, 328, 340, 466, 640, 900, 1178, 1424
PkrI GCNGC 3 cut(s) 594, 1457, 1460
PleI GAGTC 3 cut(s) 8, 475, 1106
PpsI GAGTC 3 cut(s) 8, 475, 1106
Ppu21I YACGTR 2 cut(s) 860, 944
PshBI ATTAAT 2 cut(s) 537, 630
PsiI TTATAA 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 1471
PspEI GGTNACC 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 974
PspGI CCWGG 1 cut(s) 1471
PspN4I GGNNCC 2 cut(s) 364, 1410
PspPI GGNCC 1 cut(s) 977
PstI CTGCAG 1 cut(s) 1131
PsuI RGATCY 1 cut(s) 727
RsaI GTAC 4 cut(s) 364, 862, 946, 1036
RsaNI GTAC 4 cut(s) 363, 861, 945, 1035
RseI CAYNNNNRTG 3 cut(s) 522, 753, 1481
SaqAI TTAA 2 cut(s) 537, 630
SatI GCNGC 3 cut(s) 593, 1456, 1459
Sau3AI GATC 3 cut(s) 291, 412, 727
Sau96I GGNCC 1 cut(s) 977
SchI GAGTC 3 cut(s) 8, 475, 1106
ScrFI CCNGG 2 cut(s) 132, 1473
SduI GDGCHC 1 cut(s) 1376
SfaNI GCATC 5 cut(s) 230, 501, 793, 1100, 1319
SfcI CTRYAG 2 cut(s) 1127, 1320
SfuI TTCGAA 1 cut(s) 137
SmiMI CAYNNNNRTG 3 cut(s) 522, 753, 1481
SmlI CTYRAG 3 cut(s) 186, 582, 1030
SmoI CTYRAG 3 cut(s) 186, 582, 1030
Sse9I AATT 6 cut(s) 29, 76, 396, 534, 1084, 1433
SsiI CCGC 5 cut(s) 778, 1381, 1440, 1458, 1461
SspI AATATT 2 cut(s) 541, 628
SspMI CTAG 1 cut(s) 759
StyD4I CCNGG 2 cut(s) 130, 1471
TaaI ACNGT 5 cut(s) 230, 367, 451, 784, 800
TaiI ACGT 2 cut(s) 862, 946
TaqI TCGA 4 cut(s) 17, 137, 369, 1249
TasI AATT 6 cut(s) 29, 76, 396, 534, 1084, 1433
TatI WGTACW 1 cut(s) 1034
TauI GCSGC 1 cut(s) 1461
TfiI GAWTC 9 cut(s) 160, 172, 328, 340, 466, 640, 900, 1178, 1424
Tru1I TTAA 2 cut(s) 537, 630
Tru9I TTAA 2 cut(s) 537, 630
TscAI CASTG 2 cut(s) 289, 454
TseFI GTSAC 2 cut(s) 224, 387
TseI GCWGC 2 cut(s) 592, 1455
Tsp45I GTSAC 2 cut(s) 224, 387
TspDTI ATGAA 6 cut(s) 38, 224, 228, 336, 366, 1221
TspGWI ACGGA 2 cut(s) 68, 1271
TspRI CASTG 2 cut(s) 289, 454
VspI ATTAAT 2 cut(s) 537, 630
XapI RAATTY 2 cut(s) 1084, 1433
XceI RCATGY 2 cut(s) 260, 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XmiI GTMKAC 1 cut(s) 795
XmnI GAANNNNTTC 2 cut(s) 327, 423
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.