Rh7DG441300

Mechanosensitive ion channel protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
62676130 .. 62682406
6277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG441300.1

Sequence Viewer

Length: 1686 bp
ATGCGCATGGGGAGGATTATATTTTTTCAACGGACTGATAGTAGTTGGAAGAAAAGCAGGTCACACTATGCTATGACCTCTTGCATTCAGCCTTTGCTGCTTTGGGGTGGAGCAATGCTTGTATGCAGAGCATTGGATCCTGTAGTTCTACCATCAGAAGCTAGCCAGGCTGTCAAGCAAAGACTTATAAATTTTTCACAATCATTATCAACAGTGCTGGCGTTTGCCTACTGTTTGTCAAGCTTGAACCAACAAGCACAGAAATTCTTTGCGGAGACAAGTGACCCAAGTGATACCAGAAATATGGGCTTCAATTTTGCTGGCAAAGCTGTTTATACTGCAGTTTGGGTTGCTGCAGTGTCATTGTTTATGGAGTTGCTGGGATTCTCGACCCAGAAATGGCTAACAGCTGGGGGTCTCGGCACAGTATTGCTAACCCTTGCTGGTCGTGAGATATTCACAAACTTCCTTTCCAGTGTAATGATCCATGCCACACGGCCATTTGTTGTCAATGAATGGATTCAGACTAAGATTCAAGGCTATGAAGTTTCTGGTACCGTCGAGCATGTGGGGTGGTGGTCACCAACAATTATAAGAGGCGATGATCGTGAAGCAGTTCACATTCCAAATCACAAGTTCACTGTGAATGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGCATCAAGAACCACATAGCCATTAGTCATTTGGATGTCAATAAAATTAATATTATTGTAGCTGATATGCGCAAGGTTTTAGCCAAAAATCCTCAAGTAGAGCAGCAAAGGTTGCATAGAAGAGTTTTTCTGGATAATATTAATCCAGAGAATCAGGCTCTTATGATTTTGGTATCTTGCTTTGTGAAAACATCTCACATTGAGGAGTATCTCTGCGTGAAGGAGGCAATACTCTTGGATCTTCTCAGAGTTGTCAGCCATCATCGTGCTAGGCTTGCCACACCCCTCCGCACAGTTCAGAAAGTATACGGTGATGCTGACATGGAAAATGTGCCATTTGCTGACACCATTTTTGGTAGTTCTACGGCACGTACTAATCGTCCATATCTCCTCATTGAGCCATCTTACAGAATCAGTAGTGATGACAAAAGTAAGGCTTCTAATCGCTCAGCACGTACAAATGGAGACAAGGAAGAACCTAAAGCTGGGCCAACACTAACACCTGCGCAAACTGAAGATAAGGCAACTTCAACTTCCAACTCAAGTACAAGTCCCAAGACTTCGGAAATGCCAACATCTGAACCCCAAACACAGAATTTGGCATCTGATGGTTCAGCCCCAGACTCCTCTGAAATACTGCAGTCCAAGAATGAGATGATAAGATTTGCAGGGAAGGAGAAGGGAGTTGATTCCAAAAATGTATCTCCAGAAAAGGCAACATCTAAGAAGTCTCCTGTTACTTCATCTGAGATGGGTGGTCGAAAGACGGATATTCCTTTGACAACTTTACAGGCAAAACAAGATGGAGAGAAACCTGTTGCATCACCATCTACAGCTCGCGCTCCCTTAGAAGAGAATATCATTCTCGGTGTTGCCTTAGAGGGCTCAAAGCGGACACTTCCCATTGAGGAAGATATGGCTCCATCTCTTATAGAATCAAAAGAATTCACCGCCAGCCGTAATGGCAGCGGCGGGTCTCCTCCTGGCACAGATGTGAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

561

Amino Acids

61.85

Weight (kDa)

9.05

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MSL2_3 PF25237 22 - 150 1e-67 Mechanosensitive channel protein 2/3 domain
MS_channel_2nd PF00924 152 - 222 3.9e-12 Mechanosensitive ion channel, beta-domain
Msl2-3_C PF24956 227 - 313 1.3e-44 Mechanosensitive ion channel protein 2/3 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 188, 593
AarI CACCTGC 1 cut(s) 1192
Acc16I TGCGCA 3 cut(s) 5, 752, 1188
Acc36I ACCTGC 2 cut(s) 48, 1192
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 554
AccI GTMKAC 1 cut(s) 987
AccII CGCG 1 cut(s) 1521
AciI CCGC 6 cut(s) 272, 970, 1573, 1632, 1650, 1653
AclWI GGATC 4 cut(s) 131, 144, 478, 927
AcoI YGGCCR 1 cut(s) 497
AcsI RAATTY 4 cut(s) 190, 263, 1276, 1625
AcuI CTGAAG 1 cut(s) 1215
AfaI GTAC 4 cut(s) 556, 1054, 1138, 1228
AfiI CCNNNNNNNGG 2 cut(s) 399, 1166
AgsI TTSAA 5 cut(s) 29, 247, 313, 536, 1212
AjnI CCWGG 2 cut(s) 165, 1663
AleI CACNNNNGTG 1 cut(s) 1673
AluBI AGCT 7 cut(s) 161, 243, 329, 410, 743, 1166, 1517
AluI AGCT 7 cut(s) 161, 243, 329, 410, 743, 1166, 1517
Alw26I GTCTC 5 cut(s) 269, 422, 1140, 1416, 1662
AlwI GGATC 4 cut(s) 131, 144, 478, 927
AoxI GGCC 2 cut(s) 497, 1169
ApeKI GCWGC 4 cut(s) 97, 353, 784, 1647
ApoI RAATTY 4 cut(s) 190, 263, 1276, 1625
ArsI GACNNNNNNTTYG 2 cut(s) 1016, 1048
AseI ATTAAT 2 cut(s) 729, 822
Asp700I GAANNNNTTC 2 cut(s) 519, 615
Asp718I GGTACC 1 cut(s) 554
AspLEI GCGC 5 cut(s) 6, 684, 753, 1189, 1523
AspS9I GGNCC 1 cut(s) 1169
AsuHPI GGTGA 4 cut(s) 573, 1004, 1497, 1621
AsuNHI GCTAGC 1 cut(s) 161
BamHI GGATCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 554
BanII GRGCYC 1 cut(s) 1568
BbsI GAAGAC 1 cut(s) 677
BbvI GCAGC 4 cut(s) 84, 340, 796, 1659
BccI CCATC 8 cut(s) 160, 948, 1090, 1283, 1426, 1478, 1516, 1612
BceAI ACGGC 3 cut(s) 512, 1062, 1623
BciT130I CCWGG 2 cut(s) 167, 1665
BcoDI GTCTC 5 cut(s) 269, 422, 1140, 1416, 1662
BfaI CTAG 2 cut(s) 162, 951
BfmI CTRYAG 5 cut(s) 141, 339, 354, 1319, 1512
BfuAI ACCTGC 2 cut(s) 48, 1192
BglI GCCNNNNNGGC 1 cut(s) 1644
BisI GCNGC 5 cut(s) 98, 354, 785, 1648, 1651
BlpI GCTNAGC 1 cut(s) 1129
BlsI GCNGC 5 cut(s) 99, 355, 786, 1649, 1652
Bme1390I CCNGG 2 cut(s) 167, 1665
BmgT120I GGNCC 1 cut(s) 1169
BmiI GGNNCC 3 cut(s) 138, 556, 1602
BmrFI CCNGG 2 cut(s) 167, 1665
BmsI GCATC 4 cut(s) 693, 985, 1292, 1511
BmtI GCTAGC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 1371
Bpu1102I GCTNAGC 1 cut(s) 1129
BpuEI CTTGAG 2 cut(s) 759, 1207
BsaAI YACGTR 2 cut(s) 1052, 1136
BsaI GGTCTC 2 cut(s) 422, 1662
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 1166
Bse1I ACTGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 120
BseBI CCWGG 2 cut(s) 167, 1665
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 2 cut(s) 399, 1166
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 3 cut(s) 940, 1143, 1419
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 4 cut(s) 899, 1061, 1297, 1650
BseXI GCAGC 4 cut(s) 84, 340, 796, 1659
BseYI CCCAGC 3 cut(s) 379, 410, 1166
Bsh1236I CGCG 1 cut(s) 1521
BshFI GGCC 2 cut(s) 499, 1171
BshNI GGYRCC 1 cut(s) 554
BslFI GGGAC 1 cut(s) 1218
BslI CCNNNNNNNGG 2 cut(s) 399, 1166
BsmAI GTCTC 5 cut(s) 269, 422, 1140, 1416, 1662
BsmFI GGGAC 1 cut(s) 1218
BsmI GAATGC 1 cut(s) 84
BsnI GGCC 2 cut(s) 499, 1171
Bso31I GGTCTC 2 cut(s) 422, 1662
Bsp1286I GDGCHC 1 cut(s) 1568
Bsp143I GATC 4 cut(s) 136, 483, 604, 919
Bsp1720I GCTNAGC 1 cut(s) 1129
BspACI CCGC 6 cut(s) 272, 970, 1573, 1632, 1650, 1653
BspANI GGCC 2 cut(s) 499, 1171
BspCNI CTCAG 3 cut(s) 939, 1142, 1420
BspFNI CGCG 1 cut(s) 1521
BspLI GGNNCC 3 cut(s) 138, 556, 1602
BspMAI CTGCAG 3 cut(s) 343, 358, 1323
BspMI ACCTGC 2 cut(s) 48, 1192
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 4 cut(s) 131, 144, 478, 927
BspT107I GGYRCC 1 cut(s) 554
BspTNI GGTCTC 2 cut(s) 422, 1662
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 474
BssMI GATC 4 cut(s) 136, 483, 604, 919
BssNAI GTATAC 1 cut(s) 988
Bst1107I GTATAC 1 cut(s) 988
Bst2UI CCWGG 2 cut(s) 167, 1665
Bst4CI ACNGT 7 cut(s) 214, 233, 427, 559, 643, 976, 992
Bst6I CTCTTC 2 cut(s) 796, 1527
BstAPI GCANNNNNTGC 1 cut(s) 793
BstBAI YACGTR 2 cut(s) 1052, 1136
BstC8I GCNNGC 6 cut(s) 163, 219, 322, 957, 1519, 1636
BstDEI CTNAG 8 cut(s) 528, 662, 926, 1129, 1404, 1428, 1528, 1558
BstEII GGTNACC 1 cut(s) 579
BstF5I GGATG 1 cut(s) 721
BstFNI CGCG 1 cut(s) 1521
BstHHI GCGC 5 cut(s) 6, 684, 753, 1189, 1523
BstKTI GATC 4 cut(s) 139, 486, 607, 922
BstMAI GTCTC 5 cut(s) 269, 422, 1140, 1416, 1662
BstMBI GATC 4 cut(s) 136, 483, 604, 919
BstMWI GCNNNNNNNGC 6 cut(s) 97, 167, 326, 793, 956, 1644
BstNI CCWGG 2 cut(s) 167, 1665
BstNSI RCATGY 1 cut(s) 569
BstPI GGTNACC 1 cut(s) 579
BstSCI CCNGG 2 cut(s) 165, 1663
BstSFI CTRYAG 5 cut(s) 141, 339, 354, 1319, 1512
BstUI CGCG 1 cut(s) 1521
BstV1I GCAGC 4 cut(s) 84, 340, 796, 1659
BstV2I GAAGAC 1 cut(s) 677
BstX2I RGATCY 2 cut(s) 136, 919
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 2 cut(s) 136, 919
BstZ17I GTATAC 1 cut(s) 988
BsuRI GGCC 2 cut(s) 499, 1171
BtgZI GCGATG 1 cut(s) 615
BtsCI GGATG 1 cut(s) 721
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 4 cut(s) 219, 363, 481, 639
BveI ACCTGC 2 cut(s) 48, 1192
Cac8I GCNNGC 6 cut(s) 163, 219, 322, 957, 1519, 1636
CfoI GCGC 5 cut(s) 6, 684, 753, 1189, 1523
Cfr13I GGNCC 1 cut(s) 1169
Csp6I GTAC 4 cut(s) 555, 1053, 1137, 1227
CviAII CATG 4 cut(s) 7, 488, 566, 1003
CviQI GTAC 4 cut(s) 555, 1053, 1137, 1227
DdeI CTNAG 8 cut(s) 528, 662, 926, 1129, 1404, 1428, 1528, 1558
DpnI GATC 4 cut(s) 138, 485, 606, 921
DpnII GATC 4 cut(s) 136, 483, 604, 919
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 2 cut(s) 796, 1527
EarI CTCTTC 2 cut(s) 796, 1527
Eco24I GRGCYC 1 cut(s) 1568
Eco31I GGTCTC 2 cut(s) 422, 1662
Eco57I CTGAAG 1 cut(s) 1215
Eco91I GGTNACC 1 cut(s) 579
EcoO65I GGTNACC 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 1625
EcoRII CCWGG 2 cut(s) 165, 1663
EcoT38I GRGCYC 1 cut(s) 1568
FaeI CATG 4 cut(s) 10, 491, 569, 1006
FalI AAGNNNNNCTT 2 cut(s) 1102, 1134
FaqI GGGAC 1 cut(s) 1218
FatI CATG 4 cut(s) 6, 487, 565, 1002
FauI CCCGC 1 cut(s) 1646
FblI GTMKAC 1 cut(s) 987
Fnu4HI GCNGC 5 cut(s) 98, 354, 785, 1648, 1651
FokI GGATG 1 cut(s) 728
FriOI GRGCYC 1 cut(s) 1568
Fsp4HI GCNGC 5 cut(s) 98, 354, 785, 1648, 1651
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 162, 951
FspI TGCGCA 3 cut(s) 5, 752, 1188
GlaI GCGC 5 cut(s) 5, 683, 752, 1188, 1522
GluI GCNGC 5 cut(s) 98, 354, 785, 1648, 1651
GsaI CCCAGC 3 cut(s) 383, 414, 1170
GsuI CTGGAG 1 cut(s) 1371
HaeIII GGCC 2 cut(s) 499, 1171
HhaI GCGC 5 cut(s) 6, 684, 753, 1189, 1523
Hin1II CATG 4 cut(s) 10, 491, 569, 1006
Hin6I GCGC 5 cut(s) 4, 682, 751, 1187, 1521
HinP1I GCGC 5 cut(s) 4, 682, 751, 1187, 1521
HindIII AAGCTT 1 cut(s) 241
HphI GGTGA 4 cut(s) 573, 1004, 1497, 1621
Hpy166II GTNNAC 3 cut(s) 619, 639, 988
Hpy188I TCNGA 9 cut(s) 157, 525, 929, 981, 1246, 1261, 1288, 1312, 1429
Hpy188III TCNNGA 7 cut(s) 388, 449, 608, 688, 812, 827, 1388
Hpy8I GTNNAC 3 cut(s) 619, 639, 988
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 3 cut(s) 895, 1348, 1354
HpyCH4III ACNGT 7 cut(s) 214, 233, 427, 559, 643, 976, 992
HpyCH4IV ACGT 2 cut(s) 1051, 1135
HpyCH4V TGCA 8 cut(s) 84, 126, 341, 356, 796, 1321, 1349, 1502
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 167, 326, 793, 956, 1644
HpyF3I CTNAG 8 cut(s) 528, 662, 926, 1129, 1404, 1428, 1528, 1558
HpySE526I ACGT 2 cut(s) 1051, 1135
Hsp92II CATG 4 cut(s) 10, 491, 569, 1006
HspAI GCGC 5 cut(s) 4, 682, 751, 1187, 1521
KpnI GGTACC 1 cut(s) 558
Kzo9I GATC 4 cut(s) 136, 483, 604, 919
LmnI GCTCC 3 cut(s) 110, 1528, 1606
Lsp1109I GCAGC 4 cut(s) 84, 340, 796, 1659
LweI GCATC 4 cut(s) 693, 985, 1292, 1511
MaeI CTAG 2 cut(s) 162, 951
MaeII ACGT 2 cut(s) 1051, 1135
MaeIII GTNAC 4 cut(s) 60, 281, 579, 1417
MalI GATC 4 cut(s) 138, 485, 606, 921
MboI GATC 4 cut(s) 136, 483, 604, 919
MboII GAAGA 8 cut(s) 61, 682, 813, 914, 1166, 1208, 1544, 1604
MflI RGATCY 2 cut(s) 136, 919
MhlI GDGCHC 1 cut(s) 1568
MluCI AATT 7 cut(s) 190, 263, 313, 588, 726, 1276, 1625
MlyI GAGTC 2 cut(s) 667, 1298
MmeI TCCRAC 2 cut(s) 26, 1242
MroXI GAANNNNTTC 2 cut(s) 519, 615
MseI TTAA 2 cut(s) 729, 822
MslI CAYNNNNRTG 3 cut(s) 714, 945, 1673
MspA1I CMGCKG 2 cut(s) 410, 1650
MspR9I CCNGG 2 cut(s) 167, 1665
Mva1269I GAATGC 1 cut(s) 84
MvaI CCWGG 2 cut(s) 167, 1665
MvnI CGCG 1 cut(s) 1521
MwoI GCNNNNNNNGC 6 cut(s) 97, 167, 326, 793, 956, 1644
NdeII GATC 4 cut(s) 136, 483, 604, 919
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 4 cut(s) 10, 491, 569, 1006
NlaIV GGNNCC 3 cut(s) 138, 556, 1602
NmeAIII GCCGAG 1 cut(s) 399
NmuCI GTSAC 3 cut(s) 60, 281, 579
NsbI TGCGCA 3 cut(s) 5, 752, 1188
NspI RCATGY 1 cut(s) 569
OliI CACNNNNGTG 1 cut(s) 1673
PaqCI CACCTGC 1 cut(s) 1192
PcsI WCGNNNNNNNCGW 2 cut(s) 1057, 1132
PctI GAATGC 1 cut(s) 84
PdmI GAANNNNTTC 2 cut(s) 519, 615
PfeI GAWTC 8 cut(s) 384, 520, 532, 658, 832, 1092, 1370, 1616
PkrI GCNGC 5 cut(s) 99, 355, 786, 1649, 1652
PleI GAGTC 2 cut(s) 667, 1298
PpsI GAGTC 2 cut(s) 667, 1298
Ppu21I YACGTR 2 cut(s) 1052, 1136
PshBI ATTAAT 2 cut(s) 729, 822
PsiI TTATAA 2 cut(s) 188, 593
Psp6I CCWGG 2 cut(s) 165, 1663
PspEI GGTNACC 1 cut(s) 579
PspFI CCCAGC 3 cut(s) 379, 410, 1166
PspGI CCWGG 2 cut(s) 165, 1663
PspN4I GGNNCC 3 cut(s) 138, 556, 1602
PspPI GGNCC 1 cut(s) 1169
PstI CTGCAG 3 cut(s) 343, 358, 1323
PsuI RGATCY 2 cut(s) 136, 919
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 4 cut(s) 556, 1054, 1138, 1228
RsaNI GTAC 4 cut(s) 555, 1053, 1137, 1227
RseI CAYNNNNRTG 3 cut(s) 714, 945, 1673
SaqAI TTAA 2 cut(s) 729, 822
SatI GCNGC 5 cut(s) 98, 354, 785, 1648, 1651
Sau3AI GATC 4 cut(s) 136, 483, 604, 919
Sau96I GGNCC 1 cut(s) 1169
SchI GAGTC 2 cut(s) 667, 1298
ScrFI CCNGG 2 cut(s) 167, 1665
SduI GDGCHC 1 cut(s) 1568
SfaNI GCATC 4 cut(s) 693, 985, 1292, 1511
SfcI CTRYAG 5 cut(s) 141, 339, 354, 1319, 1512
SmiMI CAYNNNNRTG 3 cut(s) 714, 945, 1673
SmlI CTYRAG 2 cut(s) 774, 1222
SmoI CTYRAG 2 cut(s) 774, 1222
Sse9I AATT 7 cut(s) 190, 263, 313, 588, 726, 1276, 1625
SsiI CCGC 6 cut(s) 272, 970, 1573, 1632, 1650, 1653
SspI AATATT 2 cut(s) 733, 820
SspMI CTAG 2 cut(s) 162, 951
StyD4I CCNGG 2 cut(s) 165, 1663
TaaI ACNGT 7 cut(s) 214, 233, 427, 559, 643, 976, 992
TaiI ACGT 2 cut(s) 1054, 1138
TaqI TCGA 3 cut(s) 389, 561, 1441
TasI AATT 7 cut(s) 190, 263, 313, 588, 726, 1276, 1625
TatI WGTACW 1 cut(s) 1226
TauI GCSGC 1 cut(s) 1653
TfiI GAWTC 8 cut(s) 384, 520, 532, 658, 832, 1092, 1370, 1616
Tru1I TTAA 2 cut(s) 729, 822
Tru9I TTAA 2 cut(s) 729, 822
TscAI CASTG 4 cut(s) 219, 363, 481, 646
TseFI GTSAC 3 cut(s) 60, 281, 579
TseI GCWGC 4 cut(s) 97, 353, 784, 1647
Tsp45I GTSAC 3 cut(s) 60, 281, 579
TspDTI ATGAA 3 cut(s) 528, 558, 1413
TspGWI ACGGA 2 cut(s) 46, 1463
TspRI CASTG 4 cut(s) 219, 363, 481, 646
VspI ATTAAT 2 cut(s) 729, 822
XapI RAATTY 4 cut(s) 190, 263, 1276, 1625
XceI RCATGY 1 cut(s) 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 709
XmiI GTMKAC 1 cut(s) 987
XmnI GAANNNNTTC 2 cut(s) 519, 615
XspI CTAG 2 cut(s) 162, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.