Rh7DG002600

Soybean trypsin inhibitor (Kunitz) family of protease inhibitors

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017494
Physical Location & Seq
Forward (+)
252787 .. 253140
354 bp
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UTR
Exon/CDS
Intron
Rh7DG002600.1

Sequence Viewer

Length: 354 bp
ATGAGACCCTGCGCATTGGCATCACTAGCCTTTATCTGCTACCTCGGTTTCTTTGCCTTCAGAGACAAGGCTTTGTTGGTTGCAGCTGATGCTGCTTGTGCTTCTGCTCCTGCTCCTGCTCCTGCTCCAGTGCTTGACATCAAAGATGATAATCTCCGAAGTGGCGTGGAGTATTGGATCCTGCCGGTCATCCGTGGGAGAGGTGGGGGGCTAACTCTAGCCACCGCTGGCAATAGAAATAAAACTAACTGCCCACTTGATGTTGTTCAAGAGCAACACGAGGTATCCAATGGTTTTCCACTCACATTATTCGCCTCTGAACTTGAAGAAAGGCGTTGTTCACCTATCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kunitz_legume

Protein Analysis

117

Amino Acids

12.57

Weight (kDa)

6.06

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kunitz_legume PF00197 44 - 106 3.6e-15 Trypsin and protease inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17860
fragaria_vesca FvH4_5g18500 FvH4_5g18510
prunus_persica Prupe.5G074400_v2.0.a1 Prupe.5G074500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0177011
rosa_laevigata RLG00000005564
rosa_samantha Rh7AG002400 Rh7BG002700 Rh7CG002000 Rh7DG002600
rosa_wichuraiana Rw7G000190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 13
AciI CCGC 1 cut(s) 225
AclWI GGATC 2 cut(s) 172, 185
AcuI CTGAAG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 269, 326
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 2 cut(s) 172, 185
ApeKI GCWGC 2 cut(s) 83, 92
AspLEI GCGC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 333
BamHI GGATCC 1 cut(s) 177
BauI CACGAG 1 cut(s) 278
BbvI GCAGC 2 cut(s) 79, 95
BciVI GTATCC 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 2 cut(s) 26, 218
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 2 cut(s) 84, 93
BlsI GCNGC 2 cut(s) 85, 94
BmiI GGNNCC 1 cut(s) 179
BmsI GCATC 2 cut(s) 29, 79
BpmI CTGGAG 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 43, 193
Bse118I RCCGGY 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 43, 193
BseGI GGATG 1 cut(s) 189
BseJI GATNNNNATC 1 cut(s) 150
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 2 cut(s) 79, 95
BsiSI CCGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 179
BspPI GGATC 2 cut(s) 172, 185
BsrFI RCCGGY 1 cut(s) 184
BsrI ACTGG 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 43, 193
BssMI GATC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 278
Bst2BI CACGAG 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 4 cut(s) 26, 89, 92, 98
BstV1I GCAGC 2 cut(s) 79, 95
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BsuI GTATCC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 135, 349
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 184
CviJI RGCY 5 cut(s) 29, 71, 86, 211, 221
CviKI_1 RGCY 5 cut(s) 29, 71, 86, 211, 221
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 84, 93
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 2 cut(s) 84, 93
FspBI CTAG 2 cut(s) 26, 218
FspI TGCGCA 1 cut(s) 13
GlaI GCGC 1 cut(s) 13
GluI GCNGC 2 cut(s) 84, 93
GsuI CTGGAG 1 cut(s) 111
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 333
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 3 cut(s) 62, 158, 319
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 89, 92, 98
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 4 cut(s) 112, 118, 124, 130
LpnPI CCDG 8 cut(s) 22, 123, 129, 135, 141, 194, 198, 213
Lsp1109I GCAGC 2 cut(s) 79, 95
LweI GCATC 2 cut(s) 29, 79
MaeI CTAG 2 cut(s) 26, 218
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 338
MflI RGATCY 1 cut(s) 177
MnlI CCTC 4 cut(s) 53, 194, 274, 325
MspA1I CMGCKG 2 cut(s) 86, 227
MspI CCGG 1 cut(s) 185
MwoI GCNNNNNNNGC 4 cut(s) 26, 89, 92, 98
NdeII GATC 1 cut(s) 177
NlaIV GGNNCC 1 cut(s) 179
NsbI TGCGCA 1 cut(s) 13
PkrI GCNGC 2 cut(s) 85, 94
PspN4I GGNNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 86
SatI GCNGC 2 cut(s) 84, 93
Sau3AI GATC 1 cut(s) 177
SetI ASST 5 cut(s) 45, 88, 205, 285, 346
SfaNI GCATC 2 cut(s) 29, 79
SsiI CCGC 1 cut(s) 225
SspMI CTAG 2 cut(s) 26, 218
TscAI CASTG 1 cut(s) 135
TseI GCWGC 2 cut(s) 83, 92
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 1 cut(s) 135
XspI CTAG 2 cut(s) 26, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.