Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008420

Physical Location & Seq

Genomic Coordinates Reverse (-)

13084662 .. 13090788

Gene Structure 6127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2802 bp

ATGAATGTGGTTGGCAAAGTTGGGAGCCTAATTTCCCAAGGTGTTTACTCTGTTGCCACCCCCTTTCATCCTTTTGGTGGGGCAGTTGATGTCATTGTTGTTCAGCAGCAAGATGGGACGTTCCGAAGCACACCTTGGTACGTTCGGTTTGGAAAATTCCAGGGTGTTCTGAAAGGTCAAGAGAAGTTTGTCCGGATAAATGTAAATGGGATCGATGCCAATTTCCACATGTATCTTGATAACTCGGGTGAGGCTTACTTTATAAAGGAGGTTGATGCTAGTAAAGGAAAAGGAAGTGAGGCGAATGGGGCTGATTTGGATAATTTAAAACGAGAGGATGGTGATGGCCAAAATAGTAATCTTGACCTTCATAGACTTGAGCATAGTGTCTCTGATTCGGCAGTAATCCAATTGGATGAATGTGGTTCCTTTCGCGCAAACCGGTTAGAGAGAGCAGAATCTGATGTTGATCGGAAGTTTTATGAATTTCAAGATGATCAATCTTCTCTAGAAGGTTCAGCTGAGTTATCAGAGTATGGGTCGTCTCGATATGATAATTTTGATACTGAGCTTCTTGGGGAATCACAGAATTTAAACCCAGAAGTTATATTGGTGAGTGTGGATGGTCATGTATTGACTGCCCCCATCTCAGCATCAGAACATAATGCAGAGAATTTGCAATTAGACACGCCTAGGTTTAATCTGGGCCCAGGTGAAGAGACTGACTTTTGTGAAGGAAGTGAGGAGTGTTCGGGAGAGAATGCTTGGGCAGATTATATTAGTAAGCTGGATGCACCTAGAACTAGTGATGCAGCCGGTAATGTTCACAGCATTCAGAATGATAACAATGATACCGGACTCCAGGTTGAAGTTTGTGAAGGAAAAGAAGAACAGGCCTGTCAAGCTCAAGAAACTCAAAAGACTTCAAACCAGGAAAGAGATCTTCAGATGCATGGCGATTCAGAAGATGCATCTGCTAAGAAGGCAGAGGTTTTCGGGAGCTGCTTGGAGCTAACAGAGCTGGCCAAACGTGCTGGTAAAAATAATGTTGAAGATGAGGGTTCCTCATTGGAGACTCAAATTTCAACAGAGAAGTCTCAACAGACTCTAGATACTGGTATTGTTGAATTAAAAGAGAACGATGAGTTGTCTGCTTCCTGTGGTTCTGTTTTACCTGGCAACAATATGTCTCCAGATTTACAAGTTGGAAACGAATCAGCACTTGCATCTGATGCTAGTATTGATAGCATTTCAATGCATTCTGTCAGCAATGATTTAGAAAGGAAGGATGAACAAATGGGTGTTGACAGCAGTTATGTTCATTCCGTCAACATTGATTTTGAAAGGAAGCATGAGCAAATCGGTATTGATATCATTTCCGCACATTCTGTCAGCAATGGTTTAGAAAGGAAGGAAGAACAAATCAGTATTGACAGCGTGTCTATACATTCTGTCAGCAATGCATTGGCAGAAGTTGATGGGACAGAGACTAGTCAGGAAAGACCTGCAACCGGAGATGAATGCAGTAAAAGTGAGTCAATAGAACCTGGAACAGCATCTCCCAGTGAAGTAACACAAGTTAATTCAAGCATTCGGTTTGAGATCTCACTGTGTAGGAATGAACTTCGGGCGGGTATGGGCGTGACTGCTGCTGCTGAAGCCTTTGATGCCCGTCGTGTTTCTGCAGAGGATTTCAGAACTTCTGCTACAGCAATTATAAAAAATGAAAATCTGATCATCAGATTTAAAGATAGATACTTTTCATGGGAGAAAGCAGCTCCTGTTGTTCTTGGAATGGCTGCATTTGGTCTAGATTTACCCCTTGAGAGCAAGGATGCAATTCCTGTAGAACAAGATGACACAGAAAAACCGTCGACTCCTGGACGTAAATGGAGGCTGTGGCCTATTCCATTCCGAAGGGTCAAAACACTTGAGCACACCAGCAGTAATTCATCAAATGAGGAGGAATTTGTTGATTCTGAATCCAGTTTGCATAACTCTCAAGTTGAAGCAACTCCTGAGTCCCCTCAGAAGCAACTTGTAAGGACAAATGTTCCCACCACTGAGCAGATAGCATCTCTAAATCTCAAAGAAGGCCAAAATGTGATAACTTTCAGTTTCTCTACCAGAGTTTTAGGAACACAACAGGTTGATGCACATATTTACTTGTGGAAATGGAATGCACGCATTGTAATTTCTGATGTTGATGGAACTATTACCAAGTCTGATGTTTTAGGTCAGTTTATGCCATTAGTTGGAAAGGATTGGACACAATCTGGGGTGGCTAGACTTTTTTCAGCAATTAAGGAAAATGGATATCAGCTACTGTTTTTGAGTGCACGTGCAATTATACAGGCATACCTAACGAGAAGCTTTTTGAATAATCTAAAACAGGATGGAAAAGCATTACCCAGTGGACCTGTCGTTATCTCACCTGATGGATTATTTCCGTCATTATTTCGTGAAGTTGTAAGAAGAGCACCGCATGAGTTCAAAATTGCCTGTTTAGAGGACATAAAAAAACTCTTCCCCCAGGATTACAATCCATTTTATGCAGGTTTTGGAAATAGAGACACAGATGAGCTCAGCTACAGAAAAATTGGGATTCCAAAGGGCAAGATTTTTATAATCAATCCCAAGGGTGAGGTGGCCATCAGCCATCATCGTGCTGGTGATGTGAAGTCGTATACATCTTTACATACTCTTGTCAATGACATGTTTCCTCCAACTTCATTGGTTGAGCAGGAAGATTTTAACTCATGGAACTATTGGAGACTGCCGTTGCCAGAAGTTGACCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006810 GO:0006886 GO:0006950 GO:0007154 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009267 GO:0009605 GO:0009705 GO:0009987 GO:0009991 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016036 GO:0019374 GO:0019375 GO:0019637 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032586 GO:0033036 GO:0033554 GO:0034613 GO:0042594 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046467 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0070727 GO:0071496 GO:0071702 GO:0071704 GO:0071705 GO:0090407 GO:0098588 GO:0098791 GO:0098805 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

LNS2 Lipin_N Lipin_mid

Protein Analysis

933

Amino Acids

102.95

Weight (kDa)

4.7

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipin_N	PF04571	1 - 95	2e-30	lipin, N-terminal conserved region
Lipin_mid	PF16876	533 - 634	1.9e-18	Lipin/Ned1/Smp2 multi-domain protein middle domain
LNS2	PF08235	684 - 908	1.1e-96	LNS2 (Lipin/Ned1/Smp2)
LNS2_PITM1-3	PF24694	731 - 877	4.7e-07	PITM 1-3, LNS2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09560 AT3G09560 AT3G09560 AT3G09560 AT5G42870
fragaria_vesca	FvH4_6g14720
malus_domestica	MD04G1116800.v1.1 MD12G1132500.v1.1
prunus_persica	Prupe.6G246600_v2.0.a1 Prupe.6G246600_v2.0.a1
pyrus_communis	pycom04g10670 pycom12g12830
rosa_chinensis	RchiOBHm_Chr3g0467941
rosa_laevigata	RLG00000024465
rosa_multiflora	Rmu_sc0001793.1_g000056 Rmu_sc0006017.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413270
rosa_rugosa	Rorug03G0090600
rosa_samantha	Rh3AG139100 Rh3BG160700 Rh3CG160600 Rh3DG161200
rosa_wichuraiana	Rw3G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	263, 1718, 2627
Acc36I	ACCTGC	2 cut(s)	1513, 2546
AccB7I	CCANNNNNTGG	1 cut(s)	2255
AccI	GTMKAC	2 cut(s)	1874, 2687
AccII	CGCG	1 cut(s)	435
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	3 cut(s)	1380, 1631, 2483
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	3 cut(s)	346, 1023, 2649
AcsI	RAATTY	6 cut(s)	155, 485, 589, 673, 1080, 1967
AcuI	CTGAAG	2 cut(s)	929, 1677
AcvI	CACGTG	1 cut(s)	2342
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	77, 1511, 2255
AflIII	ACRYGT	2 cut(s)	228, 2715
AgeI	ACCGGT	1 cut(s)	441
AhdI	GACNNNNNGTC	1 cut(s)	1438
AhlI	ACTAGT	2 cut(s)	803, 1490
AjnI	CCWGG	8 cut(s)	159, 709, 861, 930, 1174, 1546, 1879, 2532
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AloI	GAACNNNNNNTCC	2 cut(s)	1543, 1575
Alw21I	GWGCWC	4 cut(s)	1938, 2341, 2482, 2586
Alw26I	GTCTC	9 cut(s)	394, 549, 713, 1067, 1101, 1194, 1481, 2565, 2767
Alw44I	GTGCAC	1 cut(s)	2337
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	3 cut(s)	461, 1781, 2326
Ama87I	CYCGRG	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	192
AoxI	GGCC	7 cut(s)	346, 706, 894, 1023, 1901, 2095, 2649
ApaI	GGGCCC	1 cut(s)	710
ApaLI	GTGCAC	1 cut(s)	2337
ApeKI	GCWGC	7 cut(s)	106, 812, 1002, 1649, 1652, 1775, 1799
ApoI	RAATTY	6 cut(s)	155, 485, 589, 673, 1080, 1967
AsiGI	ACCGGT	1 cut(s)	441
AspA2I	CCTAGG	1 cut(s)	692
AspLEI	GCGC	1 cut(s)	437
AspS9I	GGNCC	3 cut(s)	706, 707, 2417
AsuHPI	GGTGA	7 cut(s)	260, 353, 625, 725, 2424, 2654, 2684
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	2417
AvrII	CCTAGG	1 cut(s)	692
BaeGI	GKGCMC	2 cut(s)	710, 2341
BalI	TGGCCA	3 cut(s)	348, 1025, 2651
BanII	GRGCYC	2 cut(s)	710, 2586
BbrPI	CACGTG	1 cut(s)	2342
Bbv12I	GWGCWC	4 cut(s)	1938, 2341, 2482, 2586
BbvI	GCAGC	7 cut(s)	118, 824, 989, 1636, 1639, 1786, 1787
BceAI	ACGGC	1 cut(s)	2764
BciT130I	CCWGG	8 cut(s)	161, 711, 863, 932, 1176, 1548, 1881, 2534
BclI	TGATCA	2 cut(s)	496, 1734
BcoDI	GTCTC	9 cut(s)	394, 549, 713, 1067, 1101, 1194, 1481, 2565, 2767
BcuI	ACTAGT	2 cut(s)	803, 1490
BfmI	CTRYAG	5 cut(s)	1683, 1707, 1845, 2590, 2798
BfuAI	ACCTGC	2 cut(s)	1513, 2546
BglII	AGATCT	2 cut(s)	940, 1602
BisI	GCNGC	7 cut(s)	107, 813, 1003, 1650, 1653, 1776, 1800
BlnI	CCTAGG	1 cut(s)	692
BlpI	GCTNAGC	1 cut(s)	2585
BlsI	GCNGC	7 cut(s)	108, 814, 1004, 1651, 1654, 1777, 1801
Bme1390I	CCNGG	8 cut(s)	161, 711, 863, 932, 1176, 1548, 1881, 2534
Bme18I	GGWCC	1 cut(s)	2417
BmeRI	GACNNNNNGTC	1 cut(s)	1438
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	706, 707, 2417
BmiI	GGNNCC	4 cut(s)	26, 427, 708, 1063
BmrFI	CCNGG	8 cut(s)	161, 711, 863, 932, 1176, 1548, 1881, 2534
BmrI	ACTGGG	2 cut(s)	1557, 2406
BmuI	ACTGGG	2 cut(s)	1557, 2406
BplI	GAGNNNNNCTC	2 cut(s)	1049, 1081
BpmI	CTGGAG	2 cut(s)	845, 1176
Bpu1102I	GCTNAGC	1 cut(s)	2585
BpuEI	CTTGAG	5 cut(s)	398, 891, 1844, 1952, 1986
Bsa29I	ATCGAT	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	2342
BsaBI	GATNNNNATC	2 cut(s)	468, 2541
BsaJI	CCNNGG	7 cut(s)	37, 134, 160, 692, 709, 2532, 2637
BsaWI	WCCGGW	4 cut(s)	192, 441, 854, 1511
BsaXI	ACNNNNNCTCC	2 cut(s)	1543, 1573
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	2 cut(s)	441, 815
Bse1I	ACTGG	4 cut(s)	1120, 1563, 1986, 2412
Bse3DI	GCAATG	3 cut(s)	1276, 1402, 1465
Bse8I	GATNNNNATC	2 cut(s)	468, 2541
BseAI	TCCGGA	1 cut(s)	192
BseBI	CCWGG	8 cut(s)	161, 711, 863, 932, 1176, 1548, 1881, 2534
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	7 cut(s)	37, 134, 160, 692, 709, 2532, 2637
BseGI	GGATG	8 cut(s)	67, 343, 421, 628, 796, 1294, 1840, 2401
BseJI	GATNNNNATC	2 cut(s)	468, 2541
BseLI	CCNNNNNNNGG	3 cut(s)	77, 1511, 2255
BseMI	GCAATG	3 cut(s)	1276, 1402, 1465
BseMII	CTCAG	7 cut(s)	513, 558, 663, 2010, 2042, 2055, 2599
BseNI	ACTGG	4 cut(s)	1120, 1563, 1986, 2412
BseRI	GAGGAG	2 cut(s)	758, 1976
BseSI	GKGCMC	2 cut(s)	710, 2341
BseXI	GCAGC	7 cut(s)	118, 824, 989, 1636, 1639, 1786, 1787
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	7 cut(s)	348, 708, 896, 1025, 1903, 2097, 2651
BshTI	ACCGGT	1 cut(s)	441
BshVI	ATCGAT	1 cut(s)	213
BsiHKAI	GWGCWC	4 cut(s)	1938, 2341, 2482, 2586
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	5 cut(s)	193, 442, 816, 855, 1512
BslFI	GGGAC	3 cut(s)	130, 1495, 2008
BslI	CCNNNNNNNGG	3 cut(s)	77, 1511, 2255
BsmAI	GTCTC	9 cut(s)	394, 549, 713, 1067, 1101, 1194, 1481, 2565, 2767
BsmBI	CGTCTC	1 cut(s)	549
BsmFI	GGGAC	3 cut(s)	130, 1495, 2008
BsmI	GAATGC	6 cut(s)	766, 831, 1258, 1526, 1590, 2185
BsnI	GGCC	7 cut(s)	348, 708, 896, 1025, 1903, 2097, 2651
BsoBI	CYCGRG	1 cut(s)	244
Bsp120I	GGGCCC	1 cut(s)	706
Bsp1286I	GDGCHC	5 cut(s)	710, 1938, 2341, 2482, 2586
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	6 cut(s)	210, 469, 496, 940, 1602, 1734
Bsp1720I	GCTNAGC	1 cut(s)	2585
BspACI	CCGC	3 cut(s)	1380, 1631, 2483
BspANI	GGCC	7 cut(s)	348, 708, 896, 1025, 1903, 2097, 2651
BspCNI	CTCAG	7 cut(s)	514, 559, 662, 2011, 2041, 2056, 2598
BspDI	ATCGAT	1 cut(s)	213
BspEI	TCCGGA	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	4 cut(s)	26, 427, 708, 1063
BspMAI	CTGCAG	1 cut(s)	1687
BspMI	ACCTGC	2 cut(s)	1513, 2546
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	2470
BsrDI	GCAATG	3 cut(s)	1276, 1402, 1465
BsrFI	RCCGGY	2 cut(s)	441, 815
BsrI	ACTGG	4 cut(s)	1120, 1563, 1986, 2412
BssAI	RCCGGY	2 cut(s)	441, 815
BssECI	CCNNGG	7 cut(s)	37, 134, 160, 692, 709, 2532, 2637
BssMI	GATC	6 cut(s)	210, 469, 496, 940, 1602, 1734
BssNAI	GTATAC	1 cut(s)	2688
BssT1I	CCWWGG	4 cut(s)	37, 134, 692, 2637
Bst1107I	GTATAC	1 cut(s)	2688
Bst2UI	CCWGG	8 cut(s)	161, 711, 863, 932, 1176, 1548, 1881, 2534
Bst4CI	ACNGT	3 cut(s)	1611, 1872, 2328
Bst6I	CTCTTC	3 cut(s)	711, 2470, 2531
BstAPI	GCANNNNNTGC	1 cut(s)	1232
BstBAI	YACGTR	1 cut(s)	2342
BstC8I	GCNNGC	2 cut(s)	1023, 2185
BstDEI	CTNAG	8 cut(s)	522, 567, 649, 978, 2019, 2028, 2064, 2585
BstF5I	GGATG	8 cut(s)	67, 343, 421, 628, 796, 1294, 1840, 2401
BstFNI	CGCG	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	6 cut(s)	213, 472, 499, 943, 1605, 1737
BstMAI	GTCTC	9 cut(s)	394, 549, 713, 1067, 1101, 1194, 1481, 2565, 2767
BstMBI	GATC	6 cut(s)	210, 469, 496, 940, 1602, 1734
BstMWI	GCNNNNNNNGC	8 cut(s)	308, 902, 983, 1018, 1031, 1232, 1658, 1667
BstNI	CCWGG	8 cut(s)	161, 711, 863, 932, 1176, 1548, 1881, 2534
BstNSI	RCATGY	2 cut(s)	232, 2719
BstSCI	CCNGG	8 cut(s)	159, 709, 861, 930, 1174, 1546, 1879, 2532
BstSFI	CTRYAG	5 cut(s)	1683, 1707, 1845, 2590, 2798
BstSLI	GKGCMC	2 cut(s)	710, 2341
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	7 cut(s)	118, 824, 989, 1636, 1639, 1786, 1787
BstX2I	RGATCY	2 cut(s)	940, 1602
BstYI	RGATCY	2 cut(s)	940, 1602
BstZ17I	GTATAC	1 cut(s)	2688
Bsu15I	ATCGAT	1 cut(s)	213
BsuRI	GGCC	7 cut(s)	348, 708, 896, 1025, 1903, 2097, 2651
BsuTUI	ATCGAT	1 cut(s)	213
BtsCI	GGATG	8 cut(s)	67, 343, 421, 628, 796, 1294, 1840, 2401
BtsIMutI	CAGTG	4 cut(s)	1570, 1607, 2061, 2419
BveI	ACCTGC	2 cut(s)	1513, 2546
Cac8I	GCNNGC	2 cut(s)	1023, 2185
CaiI	CAGNNNCTG	3 cut(s)	461, 1781, 2326
CfoI	GCGC	1 cut(s)	437
Cfr10I	RCCGGY	2 cut(s)	441, 815
Cfr13I	GGNCC	3 cut(s)	706, 707, 2417
ClaI	ATCGAT	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	139
CspAI	ACCGGT	1 cut(s)	441
CviAII	CATG	8 cut(s)	229, 629, 953, 1352, 1764, 2486, 2716, 2760
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	8 cut(s)	522, 567, 649, 978, 2019, 2028, 2064, 2585
DpnI	GATC	6 cut(s)	212, 471, 498, 942, 1604, 1736
DpnII	GATC	6 cut(s)	210, 469, 496, 940, 1602, 1734
DraI	TTTAAA	3 cut(s)	327, 594, 1747
DriI	GACNNNNNGTC	1 cut(s)	1438
EaeI	YGGCCR	3 cut(s)	346, 1023, 2649
Eam1104I	CTCTTC	3 cut(s)	711, 2470, 2531
Eam1105I	GACNNNNNGTC	1 cut(s)	1438
EarI	CTCTTC	3 cut(s)	711, 2470, 2531
Ecl136II	GAGCTC	1 cut(s)	2584
Eco130I	CCWWGG	4 cut(s)	37, 134, 692, 2637
Eco147I	AGGCCT	1 cut(s)	896
Eco24I	GRGCYC	2 cut(s)	710, 2586
Eco32I	GATATC	2 cut(s)	1372, 2318
Eco47I	GGWCC	1 cut(s)	2417
Eco53kI	GAGCTC	1 cut(s)	2584
Eco57I	CTGAAG	2 cut(s)	929, 1677
Eco72I	CACGTG	1 cut(s)	2342
Eco88I	CYCGRG	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	2584
EcoRII	CCWGG	8 cut(s)	159, 709, 861, 930, 1174, 1546, 1879, 2532
EcoRV	GATATC	2 cut(s)	1372, 2318
EcoT14I	CCWWGG	4 cut(s)	37, 134, 692, 2637
EcoT22I	ATGCAT	4 cut(s)	954, 973, 1260, 1465
EcoT38I	GRGCYC	2 cut(s)	710, 2586
ErhI	CCWWGG	4 cut(s)	37, 134, 692, 2637
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	8 cut(s)	232, 632, 956, 1355, 1767, 2489, 2719, 2763
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FaqI	GGGAC	3 cut(s)	130, 1495, 2008
FatI	CATG	8 cut(s)	228, 628, 952, 1351, 1763, 2485, 2715, 2759
FauI	CCCGC	1 cut(s)	1624
FbaI	TGATCA	2 cut(s)	496, 1734
FblI	GTMKAC	2 cut(s)	1874, 2687
Fnu4HI	GCNGC	7 cut(s)	107, 813, 1003, 1650, 1653, 1776, 1800
FokI	GGATG	8 cut(s)	54, 350, 428, 635, 803, 1301, 1847, 2408
FriOI	GRGCYC	2 cut(s)	710, 2586
Fsp4HI	GCNGC	7 cut(s)	107, 813, 1003, 1650, 1653, 1776, 1800
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	7 cut(s)	107, 813, 1003, 1650, 1653, 1776, 1800
GsuI	CTGGAG	2 cut(s)	845, 1176
HaeIII	GGCC	7 cut(s)	348, 708, 896, 1025, 1903, 2097, 2651
HapII	CCGG	5 cut(s)	193, 442, 816, 855, 1512
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	8 cut(s)	232, 632, 956, 1355, 1767, 2489, 2719, 2763
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HincII	GTYRAC	4 cut(s)	1306, 1330, 1875, 2794
HindII	GTYRAC	4 cut(s)	1306, 1330, 1875, 2794
HindIII	AAGCTT	1 cut(s)	2371
HpaII	CCGG	5 cut(s)	193, 442, 816, 855, 1512
HphI	GGTGA	7 cut(s)	260, 353, 625, 725, 2424, 2654, 2684
Hpy166II	GTNNAC	9 cut(s)	46, 826, 1306, 1330, 1875, 2339, 2417, 2688, 2794
Hpy8I	GTNNAC	9 cut(s)	46, 826, 1306, 1330, 1875, 2339, 2417, 2688, 2794
Hpy99I	CGWCG	2 cut(s)	1677, 1876
HpyAV	CCTTC	9 cut(s)	377, 506, 728, 872, 976, 1279, 1405, 1911, 2087
HpyCH4III	ACNGT	3 cut(s)	1611, 1872, 2328
HpyCH4IV	ACGT	5 cut(s)	119, 141, 1030, 1885, 2341
HpyF10VI	GCNNNNNNNGC	8 cut(s)	308, 902, 983, 1018, 1031, 1232, 1658, 1667
HpyF3I	CTNAG	8 cut(s)	522, 567, 649, 978, 2019, 2028, 2064, 2585
HpySE526I	ACGT	5 cut(s)	119, 141, 1030, 1885, 2341
Hsp92II	CATG	8 cut(s)	232, 632, 956, 1355, 1767, 2489, 2719, 2763
HspAI	GCGC	1 cut(s)	435
Kpn2I	TCCGGA	1 cut(s)	192
Ksp22I	TGATCA	2 cut(s)	496, 1734
Kzo9I	GATC	6 cut(s)	210, 469, 496, 940, 1602, 1734
LguI	GCTCTTC	1 cut(s)	2470
LmnI	GCTCC	4 cut(s)	24, 999, 1009, 1783
Lsp1109I	GCAGC	7 cut(s)	118, 824, 989, 1636, 1639, 1786, 1787
MaeII	ACGT	5 cut(s)	119, 141, 1030, 1885, 2341
MaeIII	GTNAC	2 cut(s)	1570, 1642
MalI	GATC	6 cut(s)	212, 471, 498, 942, 1604, 1736
MboI	GATC	6 cut(s)	210, 469, 496, 940, 1602, 1734
MfeI	CAATTG	1 cut(s)	410
MflI	RGATCY	2 cut(s)	940, 1602
MhlI	GDGCHC	5 cut(s)	710, 1938, 2341, 2482, 2586
MlsI	TGGCCA	3 cut(s)	348, 1025, 2651
MluNI	TGGCCA	3 cut(s)	348, 1025, 2651
MlyI	GAGTC	6 cut(s)	852, 1069, 1099, 1544, 1870, 2030
MmeI	TCCRAC	3 cut(s)	1186, 2236, 2750
Mox20I	TGGCCA	3 cut(s)	348, 1025, 2651
Mph1103I	ATGCAT	4 cut(s)	954, 973, 1260, 1465
MroI	TCCGGA	1 cut(s)	192
MscI	TGGCCA	3 cut(s)	348, 1025, 2651
MseI	TTAA	8 cut(s)	326, 593, 699, 1130, 1581, 1746, 2304, 2754
MslI	CAYNNNNRTG	2 cut(s)	1253, 2664
Msp20I	TGGCCA	3 cut(s)	348, 1025, 2651
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	5 cut(s)	193, 442, 816, 855, 1512
MspR9I	CCNGG	8 cut(s)	161, 711, 863, 932, 1176, 1548, 1881, 2534
MunI	CAATTG	1 cut(s)	410
Mva1269I	GAATGC	6 cut(s)	766, 831, 1258, 1526, 1590, 2185
MvaI	CCWGG	8 cut(s)	161, 711, 863, 932, 1176, 1548, 1881, 2534
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	8 cut(s)	308, 902, 983, 1018, 1031, 1232, 1658, 1667
NdeII	GATC	6 cut(s)	210, 469, 496, 940, 1602, 1734
NlaIII	CATG	8 cut(s)	232, 632, 956, 1355, 1767, 2489, 2719, 2763
NlaIV	GGNNCC	4 cut(s)	26, 427, 708, 1063
NmuCI	GTSAC	1 cut(s)	1642
NsiI	ATGCAT	4 cut(s)	954, 973, 1260, 1465
NspI	RCATGY	2 cut(s)	232, 2719
PceI	AGGCCT	1 cut(s)	896
PciI	ACATGT	2 cut(s)	228, 2715
PciSI	GCTCTTC	1 cut(s)	2470
PctI	GAATGC	6 cut(s)	766, 831, 1258, 1526, 1590, 2185
PfeI	GAWTC	8 cut(s)	395, 458, 581, 959, 1214, 1976, 1982, 2605
PflMI	CCANNNNNTGG	1 cut(s)	2255
PfoI	TCCNGGA	1 cut(s)	1879
PinAI	ACCGGT	1 cut(s)	441
PkrI	GCNGC	7 cut(s)	108, 814, 1004, 1651, 1654, 1777, 1801
PleI	GAGTC	6 cut(s)	852, 1069, 1099, 1543, 1870, 2029
PmaCI	CACGTG	1 cut(s)	2342
PmlI	CACGTG	1 cut(s)	2342
PpsI	GAGTC	6 cut(s)	852, 1069, 1099, 1543, 1870, 2029
Ppu21I	YACGTR	1 cut(s)	2342
PscI	ACATGT	2 cut(s)	228, 2715
PsiI	TTATAA	3 cut(s)	263, 1718, 2627
Psp124BI	GAGCTC	1 cut(s)	2586
Psp6I	CCWGG	8 cut(s)	159, 709, 861, 930, 1174, 1546, 1879, 2532
PspCI	CACGTG	1 cut(s)	2342
PspGI	CCWGG	8 cut(s)	159, 709, 861, 930, 1174, 1546, 1879, 2532
PspN4I	GGNNCC	4 cut(s)	26, 427, 708, 1063
PspOMI	GGGCCC	1 cut(s)	706
PspPI	GGNCC	3 cut(s)	706, 707, 2417
PsrI	GAACNNNNNNTAC	2 cut(s)	1690, 1722
PstI	CTGCAG	1 cut(s)	1687
PstNI	CAGNNNCTG	3 cut(s)	461, 1781, 2326
PsuI	RGATCY	2 cut(s)	940, 1602
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	2 cut(s)	1253, 2664
SacI	GAGCTC	1 cut(s)	2586
SalI	GTCGAC	1 cut(s)	1873
SapI	GCTCTTC	1 cut(s)	2470
SaqAI	TTAA	8 cut(s)	326, 593, 699, 1130, 1581, 1746, 2304, 2754
SatI	GCNGC	7 cut(s)	107, 813, 1003, 1650, 1653, 1776, 1800
Sau3AI	GATC	6 cut(s)	210, 469, 496, 940, 1602, 1734
Sau96I	GGNCC	3 cut(s)	706, 707, 2417
SchI	GAGTC	6 cut(s)	852, 1069, 1099, 1544, 1870, 2030
ScrFI	CCNGG	8 cut(s)	161, 711, 863, 932, 1176, 1548, 1881, 2534
SduI	GDGCHC	5 cut(s)	710, 1938, 2341, 2482, 2586
SfcI	CTRYAG	5 cut(s)	1683, 1707, 1845, 2590, 2798
SinI	GGWCC	1 cut(s)	2417
SmiMI	CAYNNNNRTG	2 cut(s)	1253, 2664
SmlI	CTYRAG	5 cut(s)	377, 906, 1823, 1931, 2001
SmoI	CTYRAG	5 cut(s)	377, 906, 1823, 1931, 2001
SpeI	ACTAGT	2 cut(s)	803, 1490
SseBI	AGGCCT	1 cut(s)	896
SsiI	CCGC	3 cut(s)	1380, 1631, 2483
SstI	GAGCTC	1 cut(s)	2586
StuI	AGGCCT	1 cut(s)	896
StyD4I	CCNGG	8 cut(s)	159, 709, 861, 930, 1174, 1546, 1879, 2532
StyI	CCWWGG	4 cut(s)	37, 134, 692, 2637
TaaI	ACNGT	3 cut(s)	1611, 1872, 2328
TaiI	ACGT	5 cut(s)	122, 144, 1033, 1888, 2344
TaqI	TCGA	3 cut(s)	213, 547, 1874
TfiI	GAWTC	8 cut(s)	395, 458, 581, 959, 1214, 1976, 1982, 2605
Tru1I	TTAA	8 cut(s)	326, 593, 699, 1130, 1581, 1746, 2304, 2754
Tru9I	TTAA	8 cut(s)	326, 593, 699, 1130, 1581, 1746, 2304, 2754
TscAI	CASTG	4 cut(s)	1570, 1614, 2068, 2419
TseFI	GTSAC	1 cut(s)	1642
TseI	GCWGC	7 cut(s)	106, 812, 1002, 1649, 1652, 1775, 1799
Tsp45I	GTSAC	1 cut(s)	1642
TspGWI	ACGGA	2 cut(s)	1315, 2439
TspRI	CASTG	4 cut(s)	1570, 1614, 2068, 2419
Van91I	CCANNNNNTGG	1 cut(s)	2255
VneI	GTGCAC	1 cut(s)	2337
VpaK11BI	GGWCC	1 cut(s)	2417
XapI	RAATTY	6 cut(s)	155, 485, 589, 673, 1080, 1967
XbaI	TCTAGA	3 cut(s)	508, 1108, 1810
XceI	RCATGY	2 cut(s)	232, 2719
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2644, 2666
XmaJI	CCTAGG	1 cut(s)	692
XmiI	GTMKAC	2 cut(s)	1874, 2687
Zsp2I	ATGCAT	4 cut(s)	954, 973, 1260, 1465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.