AT1G02070

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010936
Physical Location & Seq
Reverse (-)
370195 .. 371090
896 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02070.1

Sequence Viewer

Length: 396 bp
ATGGAGAGAGTGTGTTGCATGTGCGGTGATGTCGGTTTCTCCGACAAGCTCTTCAGCTGCGGTCACTGCCGCTGCCGCTTCCAACACTCTTATTGTAGCAACTACTACGGCCAGTTTGCGGAGCCTACCGAGATTTGCGACTGGTGCCGCAGCGACGACCGGAAGCTGAGCAACGTTGCTAGACATGGCGGTTCTTCTTCAAAGAAGCCTTCTTCTTCGGTTAAATATGAAAATGACTTCTCAAACAGATCGGAATATTCGCCCGGCCACCGGATCAAGCATAACAATAACCGTCACGATCAAGTAGCCAAGGGCGTTGCTGGAGATGGAGGCGGAGTTACGTCGCCTAAGACGGCCACACGAAGGTACAAGCTTCTCAAAGATGTCATGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.73

Weight (kDa)

8.95

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 6 - 49 2.3e-20 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010936)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02070 AT3G60520 AT3G60520
fragaria_vesca FvH4_7g10710 FvH4_7g10710
malus_domestica MD00G1166100.v1.1 MD07G1111800.v1.1
prunus_persica Prupe.2G135200_v2.0.a1
pyrus_communis pycom07g09680 pycom11g20210
rosa_chinensis RchiOBHm_Chr1g0348651
rosa_laevigata RLG00000028633
rosa_multiflora Rmu_sc0004109.1_g000002
rosa_roxburghii Rroxscaffold_4G00306860
rosa_rugosa Rorug01G0196000
rosa_samantha Rh1AG213800 Rh1BG180200 Rh1CG198500 Rh1DG210100
rosa_wichuraiana Rw1G018110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 144
AciI CCGC 8 cut(s) 24, 60, 70, 76, 119, 148, 189, 333
AclI AACGTT 1 cut(s) 174
AclWI GGATC 1 cut(s) 281
AcoI YGGCCR 3 cut(s) 109, 265, 354
AcuI CTGAAG 1 cut(s) 37
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 3 cut(s) 118, 270, 363
AgsI TTSAA 1 cut(s) 201
AluBI AGCT 4 cut(s) 49, 57, 166, 373
AluI AGCT 4 cut(s) 49, 57, 166, 373
AlwI GGATC 1 cut(s) 281
AoxI GGCC 3 cut(s) 109, 265, 354
ApeKI GCWGC 3 cut(s) 57, 72, 150
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 38
BanI GGYRCC 1 cut(s) 144
BbvI GCAGC 3 cut(s) 44, 59, 162
BccI CCATC 1 cut(s) 320
BceAI ACGGC 2 cut(s) 124, 369
BcnI CCSGG 1 cut(s) 264
BfaI CTAG 1 cut(s) 180
BisI GCNGC 6 cut(s) 58, 70, 73, 76, 148, 151
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 6 cut(s) 59, 71, 74, 77, 149, 152
Bme1390I CCNGG 1 cut(s) 264
BmiI GGNNCC 2 cut(s) 123, 146
BmrFI CCNGG 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 342
Bpu1102I GCTNAGC 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 309
BsaWI WCCGGW 2 cut(s) 159, 270
BsaXI ACNNNNNCTCC 3 cut(s) 26, 321, 351
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 270, 363
Bse1I ACTGG 2 cut(s) 112, 146
BseDI CCNNGG 1 cut(s) 309
BseLI CCNNNNNNNGG 3 cut(s) 118, 270, 363
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 2 cut(s) 112, 146
BseXI GCAGC 3 cut(s) 44, 59, 162
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 3 cut(s) 111, 267, 356
BshNI GGYRCC 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 160
BsiSI CCGG 3 cut(s) 160, 264, 271
BslI CCNNNNNNNGG 3 cut(s) 118, 270, 363
BsnI GGCC 3 cut(s) 111, 267, 356
Bsp143I GATC 3 cut(s) 248, 273, 298
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 8 cut(s) 24, 60, 70, 76, 119, 148, 189, 333
BspANI GGCC 3 cut(s) 111, 267, 356
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 123, 146
BspPI GGATC 1 cut(s) 281
BspQI GCTCTTC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 144
BsrI ACTGG 2 cut(s) 112, 146
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 3 cut(s) 248, 273, 298
BssT1I CCWWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 167, 348
BstKTI GATC 3 cut(s) 251, 276, 301
BstMBI GATC 3 cut(s) 248, 273, 298
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 3 cut(s) 66, 75, 144
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 262
BstV1I GCAGC 3 cut(s) 44, 59, 162
BsuRI GGCC 3 cut(s) 111, 267, 356
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
Csp6I GTAC 1 cut(s) 367
CviAII CATG 3 cut(s) 19, 185, 388
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 2 cut(s) 167, 348
DpnI GATC 3 cut(s) 250, 275, 300
DpnII GATC 3 cut(s) 248, 273, 298
EaeI YGGCCR 3 cut(s) 109, 265, 354
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 3 cut(s) 22, 188, 391
FaiI YATR 5 cut(s) 20, 186, 228, 282, 389
FatI CATG 3 cut(s) 18, 184, 387
Fnu4HI GCNGC 6 cut(s) 58, 70, 73, 76, 148, 151
Fsp4HI GCNGC 6 cut(s) 58, 70, 73, 76, 148, 151
FspBI CTAG 1 cut(s) 180
GluI GCNGC 6 cut(s) 58, 70, 73, 76, 148, 151
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 3 cut(s) 111, 267, 356
HapII CCGG 3 cut(s) 160, 264, 271
Hin1II CATG 3 cut(s) 22, 188, 391
HindIII AAGCTT 1 cut(s) 371
HpaII CCGG 3 cut(s) 160, 264, 271
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 43, 253
Hpy188III TCNNGA 1 cut(s) 296
Hpy99I CGWCG 2 cut(s) 158, 346
HpyAV CCTTC 2 cut(s) 219, 357
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 2 cut(s) 174, 341
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 75, 144
HpyF3I CTNAG 2 cut(s) 167, 348
HpySE526I ACGT 2 cut(s) 174, 341
Hsp92II CATG 3 cut(s) 22, 188, 391
Kzo9I GATC 3 cut(s) 248, 273, 298
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 6 cut(s) 125, 127, 173, 277, 284, 306
Lsp1109I GCAGC 3 cut(s) 44, 59, 162
MaeI CTAG 1 cut(s) 180
MaeII ACGT 2 cut(s) 174, 341
MaeIII GTNAC 3 cut(s) 62, 293, 337
MalI GATC 3 cut(s) 250, 275, 300
MboI GATC 3 cut(s) 248, 273, 298
MboII GAAGA 5 cut(s) 43, 186, 189, 204, 207
MmeI TCCRAC 2 cut(s) 66, 106
MnlI CCTC 1 cut(s) 323
MseI TTAA 1 cut(s) 222
MspA1I CMGCKG 2 cut(s) 57, 72
MspI CCGG 3 cut(s) 160, 264, 271
MspR9I CCNGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 66, 75, 144
NciI CCSGG 1 cut(s) 264
NdeII GATC 3 cut(s) 248, 273, 298
NlaIII CATG 3 cut(s) 22, 188, 391
NlaIV GGNNCC 2 cut(s) 123, 146
NmuCI GTSAC 2 cut(s) 62, 293
NspI RCATGY 1 cut(s) 22
PciSI GCTCTTC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PkrI GCNGC 6 cut(s) 59, 71, 74, 77, 149, 152
Psp1406I AACGTT 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 123, 146
PvuII CAGCTG 1 cut(s) 57
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 6 cut(s) 58, 70, 73, 76, 148, 151
Sau3AI GATC 3 cut(s) 248, 273, 298
ScrFI CCNGG 1 cut(s) 264
SetI ASST 7 cut(s) 51, 59, 168, 177, 344, 368, 375
SsiI CCGC 8 cut(s) 24, 60, 70, 76, 119, 148, 189, 333
SspI AATATT 1 cut(s) 257
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 2 cut(s) 177, 344
TauI GCSGC 3 cut(s) 72, 78, 150
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 2 cut(s) 62, 293
TseI GCWGC 3 cut(s) 57, 72, 150
Tsp45I GTSAC 2 cut(s) 62, 293
TspDTI ATGAA 1 cut(s) 243
TspRI CASTG 1 cut(s) 71
XceI RCATGY 1 cut(s) 22
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.